mRNA_L-elsbetiae_contig1685.4602.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1685.4602.1
Unique NamemRNA_L-elsbetiae_contig1685.4602.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Match: D7G7V6_ECTSI (Acyl carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V6_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 8.110e-70
Identity = 123/143 (86.01%), Postives = 129/143 (90.21%), Query Frame = 1 
Query:    1 MQRVAAAALGRAVCLGARRVGSAT-RARSLQLHNSWQ-APSAA-RQFHFSRPVAAAAGESFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 420
            MQRVA AALGRA CL ARR GSA  R RSLQLHNSWQ AP+AA R FHFSRPVA AAG++FLDKGD TARI+AVVKAFEKVDPTKVS+ ALFKDDL+LDSLDAVEVVMAIEDEFTIEIPDSEADKI GIADAVAYIISHPAAK
Sbjct:    1 MQRVAVAALGRAACLTARRAGSAAARGRSLQLHNSWQQAPAAAVRHFHFSRPVAGAAGDTFLDKGDATARIIAVVKAFEKVDPTKVSENALFKDDLALDSLDAVEVVMAIEDEFTIEIPDSEADKIAGIADAVAYIISHPAAK 143
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BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Match: A0A7S0UFZ0_9STRA (Acyl carrier protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UFZ0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.600e-31
Identity = 62/93 (66.67%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:  142 RPVAAAAGESFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 420
            +P+   A  +FLD G+V  RI  V+K F+KVD  KV+DTA F DDL LDSLDAVEVVMAIEDEF IEIPD+EADKI+ +ADAV YI SHP AK
Sbjct:   26 QPLRTFAASTFLDSGEVAGRITGVIKNFDKVDGNKVTDTAKFTDDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYISSHPMAK 118
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BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Match: A0A1E7ETX9_9STRA (Acyl carrier protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETX9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.420e-30
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:  160 AGESFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 420
            A  +FLD G+V+ RI  VVK F+KVD  K+++TA F +DL LDSLDAVEVVMAIEDEF IEIPD+EADKI+ +ADAV YI+SHP AK
Sbjct:   35 AASTFLDAGEVSTRIQGVVKNFDKVDQNKITETAKFTEDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYIVSHPMAK 121
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BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Match: A0A7S1FKS7_9STRA (Acyl carrier protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FKS7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.280e-30
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:  169 SFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 420
            SFLD  +V++R++ VVKAF+KVDP+KV+ T+ F DDL LDSLDAVEVVMAIEDEF IEIPD+EAD+I+ + DAVAYI +HP AK
Sbjct:   52 SFLDPSEVSSRVVEVVKAFDKVDPSKVAATSKFADDLGLDSLDAVEVVMAIEDEFAIEIPDAEADRILSVEDAVAYISAHPMAK 135
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BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Match: A0A7S2SKU6_9STRA (Acyl carrier protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SKU6_9STRA)

HSP 1 Score: 113 bits (283), Expect = 8.610e-30
Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:  157 AAGESFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 420
            AAG +FLD  +VT RI++VVK F+KVDP  V   + F+DDL LDSLD+VEVVMAIEDEF IEIPD+EADKI  IADAV YI  HP AK
Sbjct:   36 AAGSTFLDPSEVTDRIVSVVKNFDKVDPANVQPESKFEDDLGLDSLDSVEVVMAIEDEFAIEIPDAEADKIASIADAVEYIAGHPMAK 123
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BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Match: A0A7S2RP75_9STRA (Acyl carrier protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP75_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.370e-29
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:  118 AARQFHFSRPVAAAAGESFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 420
            AARQ  F   + A   ESFLDK +VT RI+ VV  FEKVD +KV+  A FKDDL LDSLDAVEVV+ IE+EF +EIPD+EADKI+ +ADAV YI +HP AK
Sbjct:   40 AARQLPFVA-IRAFGAESFLDKKEVTERIMMVVSNFEKVDTSKVNPEAKFKDDLDLDSLDAVEVVLGIEEEFALEIPDAEADKILSVADAVEYIANHPQAK 139
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BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Match: A0A059LDR7_9CHLO (Acyl carrier protein n=2 Tax=unclassified Helicosporidium TaxID=2626013 RepID=A0A059LDR7_9CHLO)

HSP 1 Score: 113 bits (282), Expect = 1.450e-29
Identity = 55/87 (63.22%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:  160 AGESFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 420
            A  S+LDK DVT+R+LA+VK FEKVDP KV+++A F+ DL LDSLD VE+VMA+E+EF IEIPD+EADKI+ +++AV+Y+ S+P AK
Sbjct:   43 ADSSYLDKSDVTSRVLAIVKNFEKVDPAKVTESAAFQKDLGLDSLDTVELVMALEEEFAIEIPDAEADKILSVSEAVSYVASNPLAK 129
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BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Match: A0A448YUF5_9STRA (Acyl carrier protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUF5_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.310e-29
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:  160 AGESFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 420
            A  +FLD  +V+ R+  V+K F+KVD  KV+DT+ F DDL LDSLDAVEVVMAIEDEF IEIPD+EADKI+ +ADAV YI SHP AK
Sbjct:   35 AASTFLDPAEVSGRVTDVIKNFDKVDANKVTDTSKFTDDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYISSHPMAK 121
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BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Match: A0A7S2EA28_TRICV (Acyl carrier protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EA28_TRICV)

HSP 1 Score: 112 bits (280), Expect = 2.450e-29
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:  139 SRPVAAAAGESFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 420
            ++PV   A  +FL   +VT RI++VVK F+KVDP KV+ T+ F +DL LDSLD+VEVVMAIEDEF IEIPD+EADKIV I DAV YI  HP AK
Sbjct:   30 AQPVRTFAASTFLSPNEVTERIVSVVKNFDKVDPGKVAPTSKFAEDLGLDSLDSVEVVMAIEDEFAIEIPDAEADKIVSIGDAVEYIAGHPMAK 123
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BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Match: A0A835YPD9_9STRA (Acyl carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD9_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.650e-29
Identity = 63/102 (61.76%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:  118 AARQFHF----SRPVAAAAGESFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHP 411
            A R FH+    S   A  A   FLDK +V  R++ VVK+FEK+DPTKVS TA FKDDL LDSLD+VEVVMAIEDEF I IPD EAD I+ + DAV +I SHP
Sbjct:   46 AVRSFHYTCRASDDAATPAKPVFLDKEEVLERVMTVVKSFEKIDPTKVSPTAKFKDDLGLDSLDSVEVVMAIEDEFAIVIPDDEADAILSVEDAVVFISSHP 147
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1685.4602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7V6_ECTSI8.110e-7086.01Acyl carrier protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S0UFZ0_9STRA1.600e-3166.67Acyl carrier protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7ETX9_9STRA1.420e-3067.82Acyl carrier protein n=1 Tax=Fragilariopsis cylind... [more]
A0A7S1FKS7_9STRA4.280e-3069.05Acyl carrier protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2SKU6_9STRA8.610e-3068.18Acyl carrier protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2RP75_9STRA1.370e-2963.37Acyl carrier protein n=1 Tax=Rhizochromulina marin... [more]
A0A059LDR7_9CHLO1.450e-2963.22Acyl carrier protein n=2 Tax=unclassified Helicosp... [more]
A0A448YUF5_9STRA2.310e-2966.67Acyl carrier protein n=2 Tax=Pseudo-nitzschia TaxI... [more]
A0A7S2EA28_TRICV2.450e-2963.83Acyl carrier protein n=1 Tax=Trieres chinensis Tax... [more]
A0A835YPD9_9STRA2.650e-2961.76Acyl carrier protein n=1 Tax=Tribonema minus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1685contigL-elsbetiae_contig1685:20932..22814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue2.8e-54
Seed eggNOG ortholog2880.D7G7V6
KEGG koko:K03955
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.acyl binding
EggNOG OGsCOG0236@1,KOG1748@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Ec32 ortholog descriptionAcyl carrier protein
Ec32 orthologEc-06_000160.1
Exons3
Model size423
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1685.4602.1prot_L-elsbetiae_contig1685.4602.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1685 20932..22814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.3765533-CDS-L-elsbetiae_contig1685:20931..211231622815700.3765533-CDS-L-elsbetiae_contig1685:20931..21123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1685 20932..21123 -
1691683046.350226-CDS-L-elsbetiae_contig1685:20931..211231691683046.350226-CDS-L-elsbetiae_contig1685:20931..21123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1685 20932..21123 -
1622815700.3880877-CDS-L-elsbetiae_contig1685:21683..217461622815700.3880877-CDS-L-elsbetiae_contig1685:21683..21746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1685 21684..21746 -
1691683046.360269-CDS-L-elsbetiae_contig1685:21683..217461691683046.360269-CDS-L-elsbetiae_contig1685:21683..21746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1685 21684..21746 -
1622815700.398025-CDS-L-elsbetiae_contig1685:22646..228141622815700.398025-CDS-L-elsbetiae_contig1685:22646..22814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1685 22647..22814 -
1691683046.3708417-CDS-L-elsbetiae_contig1685:22646..228141691683046.3708417-CDS-L-elsbetiae_contig1685:22646..22814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1685 22647..22814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1685.4602.1

>prot_L-elsbetiae_contig1685.4602.1 ID=prot_L-elsbetiae_contig1685.4602.1|Name=mRNA_L-elsbetiae_contig1685.4602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MQRVAAAALGRAVCLGARRVGSATRARSLQLHNSWQAPSAARQFHFSRPV
AAAAGESFLDKGDVTARILAVVKAFEKVDPTKVSDTALFKDDLSLDSLDA
VEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK*
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mRNA from alignment at L-elsbetiae_contig1685:20932..22814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1685.4602.1 ID=mRNA_L-elsbetiae_contig1685.4602.1|Name=mRNA_L-elsbetiae_contig1685.4602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1883bp|location=Sequence derived from alignment at L-elsbetiae_contig1685:20932..22814- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCGCGTGGCAGCAGCAGCTCTGGGGCGGGCAGTTTGCCTGGGTGC
ACGACGGGTGGGATCGGCTACGCGGGCACGGTCTTTGCAGCTTCACAACT
CATGGCAGGCGCCGTCTGCTGCGAGGCAGTTCCACTTCTCCAGGCCTGTC
GCAGCCGCCGCAGGAGAGGTAACACAACAGTTAGTGGAAGACAGCAACGA
AAGTGATGTGATCGAGAGTGCACTAGTTGTCGCAAAGATTGGTTTGCGGT
AGCAAGTTATGATGGCGAAGGTTTGAGATTGCCAGCAATGGAATAGGTAG
ACCCCTGACTCCGAGGCCTCCTGAAACAAACCGCGCTGTTTTTTTTTGCG
GCCTACAAAAAGCATGGACTCTATCTATTGTATTGTACTGCTGCTGTACG
TGTTGCGGGGCATATGTATCGCATGCAAGATGGTTAAGGTTTGGCTTGGC
GACGTTGTTGGCTGTTAGCGTTGCTGGACGGGTGTCCCATTGGTCAGCAG
GGAAGGTGGCTATGTGGTGCAACGATTTTACCCCACTCTCGCTCTTCGAT
GTGTGCGTGCGCTTTGTTCGTGGCGCTCTCTGCTGGTGTTGTATTGTGTA
GAGAAGAGAGGGCTAACATTCTCGGCCGGGGCAGGCTACGCTTTTGTACA
ACGTTTCATTAAGTCGTGGCAGGGTCGAGTTTTGGATTGTGCCTCGAGCG
GCTGCGTGCCTATCTAAATACACCAAGAACGAACAATCCACCAAGGCTGG
CTAGTGTACCTGCGGTAACTGTGTACGTACATGGTCTGGTACAGAGTAGA
GGAAGGAAAGATCATCTGAACCGCTTCTCCCTTGACATTGTGATATTTAG
CCTGGTACTGAATACGCTTTGAGCGACCCCAAGCGTGTAGGAATCTCCCC
AACGCAGAGATTAGAGGTGCAGACTTGTTTACCCAAAGGGATAACTGGGA
TTAGTCAATACGAGCGCGCGCTGAAATCTTGAAGTTTTGGCGTTCCTTGT
TCCTTCCATGACAACTGACCTTTGCCTTCGCGTGCTGCTGCCGTGTGCTT
TCGGACGTGGCGTTACAGTCGTTTTTGGACAAGGGGGACGTTACAGCACG
AATCCTGGCCGTCGTGAAGGCCTTTGAAAAGGTATGTGCAACAGCAGTAA
GGAAAAGGAACAGGGGGGTATAGTGCACGGAAGCAGTGCTGTCCAAAGAT
GTGAGGTTGAATTCGAGACACTGGAGACGAGAGGAAACCCGCCGCCGCCT
GAATGACATGATAGTTTATGTCGACGAGGAGCAATCCTCGTGTTGAAATT
CTTACCCTGCGATATAATGAATGTTATTGCTGGGTTGGAGATCTTTTTAA
AGAGATCTCGTGGTTTGTTCCAGATACACAAAAATATGCTCCAAAGATAC
ACAACAATATACGCAGAAGATGTAAAAAACCGAACGGGTGCTTCCTCTCG
TGATGTACACCCGTACTTAAAATTGGCAACTCGGATAGAAACCATAGATA
GGGCGGTACTGTTATTATGTATGTCGCCCTTGGCGTGTGGGCATCAGAAT
ATCCTTAAATCCATGGTAATTCCAGATGTACCCAACCTCACGTCTCACAA
TTTGTGTTTATGCTGCGTTGGTGTGGTTTGCGCCATCTGGACTGGACTGG
ACTGGACTGGACTGGACTGGACCGGGCTAAACGCGGAACAGGTGGACCCG
ACGAAGGTTTCTGATACGGCGTTGTTCAAGGACGACTTGTCGCTGGACTC
CCTGGACGCCGTAGAAGTGGTCATGGCCATCGAGGATGAGTTCACCATCG
AAATCCCAGACTCAGAGGCAGACAAGATCGTCGGCATCGCCGACGCCGTC
GCCTACATCATCTCGCACCCCGCCGCCAAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1685:20932..22814-

>mRNA_L-elsbetiae_contig1685.4602.1 ID=mRNA_L-elsbetiae_contig1685.4602.1|Name=mRNA_L-elsbetiae_contig1685.4602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig1685:20932..22814- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCGCGTGGCAGCAGCAGCTCTGGGGCGGGCAGTTTGCCTGGGTGC
ACGACGGGTGGGATCGGCTACGCGGGCACGGTCTTTGCAGCTTCACAACT
CATGGCAGGCGCCGTCTGCTGCGAGGCAGTTCCACTTCTCCAGGCCTGTC
GCAGCCGCCGCAGGAGAGATGCAGCGCGTGGCAGCAGCAGCTCTGGGGCG
GGCAGTTTGCCTGGGTGCACGACGGGTGGGATCGGCTACGCGGGCACGGT
CTTTGCAGCTTCACAACTCATGGCAGGCGCCGTCTGCTGCGAGGCAGTTC
CACTTCTCCAGGCCTGTCGCAGCCGCCGCAGGAGAGTCGTTTTTGGACAA
GGGGGACGTTACAGCACGAATCCTGGCCGTCGTGAAGGCCTTTGAAAAGT
CGTTTTTGGACAAGGGGGACGTTACAGCACGAATCCTGGCCGTCGTGAAG
GCCTTTGAAAAGGTGGACCCGACGAAGGTTTCTGATACGGCGTTGTTCAA
GGACGACTTGTCGCTGGACTCCCTGGACGCCGTAGAAGTGGTCATGGCCA
TCGAGGATGAGTTCACCATCGAAATCCCAGACTCAGAGGCAGACAAGATC
GTCGGCATCGCCGACGCCGTCGCCTACATCATCTCGCACCCCGCCGCCAA
GTAAGTGGACCCGACGAAGGTTTCTGATACGGCGTTGTTCAAGGACGACT
TGTCGCTGGACTCCCTGGACGCCGTAGAAGTGGTCATGGCCATCGAGGAT
GAGTTCACCATCGAAATCCCAGACTCAGAGGCAGACAAGATCGTCGGCAT
CGCCGACGCCGTCGCCTACATCATCTCGCACCCCGCCGCCAAGTAA
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