mRNA_L-elsbetiae_contig1685.4603.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1685.4603.1
Unique NamemRNA_L-elsbetiae_contig1685.4603.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1685.4603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1685contigL-elsbetiae_contig1685:22971..24052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size316
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.0042036-CDS-L-elsbetiae_contig1685:22970..230251622815700.0042036-CDS-L-elsbetiae_contig1685:22970..23025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1685 22971..23025 +
1691683046.0986478-CDS-L-elsbetiae_contig1685:22970..230251691683046.0986478-CDS-L-elsbetiae_contig1685:22970..23025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1685 22971..23025 +
1622815700.0153852-CDS-L-elsbetiae_contig1685:23793..240501622815700.0153852-CDS-L-elsbetiae_contig1685:23793..24050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1685 23794..24050 +
1691683046.1088452-CDS-L-elsbetiae_contig1685:23793..240501691683046.1088452-CDS-L-elsbetiae_contig1685:23793..24050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1685 23794..24050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1685.4603.1prot_L-elsbetiae_contig1685.4603.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1685 22971..24050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1685.4603.1

>prot_L-elsbetiae_contig1685.4603.1 ID=prot_L-elsbetiae_contig1685.4603.1|Name=mRNA_L-elsbetiae_contig1685.4603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
KRSALQAVVHIGGGRAGEIAGWLSSKLDMETVERQTRAGREGKAQRKNSN
KRRKAGHEQGDGGHPSDGHSRQGQQRGGMDSAGDKAVAQGGGAKERGGGG
GAVP
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mRNA from alignment at L-elsbetiae_contig1685:22971..24052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1685.4603.1 ID=mRNA_L-elsbetiae_contig1685.4603.1|Name=mRNA_L-elsbetiae_contig1685.4603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1082bp|location=Sequence derived from alignment at L-elsbetiae_contig1685:22971..24052+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAGGAGTGCGCTGCAGGCTGTCGTACACATCGGAGGTGGACGTGCAGG
CGAAAGTGAGTTTTGAATCGTATCAATATGAAACATTCCAGATTCAAGAC
GAATTTGGTCTGGAAATAACTTCGTCTTTGGACAAAAGCTTGCTTTGGAG
GCATGTTCCGTGAGGTTGCGCCCGCACTTGCCAGACTCCCTGCTCAGTTA
GCTCGACCCCAAGGCGACTGTTATTTTGCGGGTTGTTTTTTTTCTTGCAC
AACAACCATGAAATGCTGAGGACTTAGGTGCTATACTTGCTGAAGATAAG
GTACATAAATCGATGCAACCTACCCCCTAGACTAGATCTACATGGTGTAT
CTAGGTAGATAGACTATCTTTTGTTTAGTCTAGTGGTCTCATGCATTTTG
TGCGTTGAGAATCGTCAACTTCGCGCGCAAGAGTTTTCCCATGGCTATCT
CTGGAAACAGATGGGGCCAATCAAAGTTCATTCGAAGCCAACATCCAACA
TACACTTACGCACAAGGACGTCTACATGCGCCGATGCGGAACATCACCAT
TTAGGATGCCGCGCTCAGCCTTCATCTTCGTGCGACTCGCCGAACATCTC
GTGCTCACGCTTTCCGAAAAAGCTGGCGTGCTATTGTACATAGATACTGC
CCGGATTTGCACGGATACATGGTACATGGTCTATGGTCCATCGACTGGGT
TTCCTGATGATTGTGAGTATGAGTACACCTGCGGCCCCGCCGCTTACCGA
TGCTCTCTCGCTCTCCCCCGTGTTCGGAACAACGCTTGTTACCTACCACC
GCATGTATGGAAACGAAACCCAGTCGCTGGCTGGCTGTCGAGCAAGCTAG
ACATGGAGACGGTAGAGAGACAAACGAGGGCGGGGAGAGAGGGGAAAGCG
CAGCGAAAAAACAGCAACAAGCGCCGTAAGGCTGGACATGAGCAAGGAGA
TGGTGGACACCCAAGCGACGGTCATAGCAGGCAGGGGCAGCAGCGAGGTG
GGATGGACAGCGCCGGAGACAAGGCAGTAGCGCAGGGGGGGGGGGCAAAA
GAACGAGGAGGAGGAGGAGGAGCAGTGCCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1685:22971..24052+

>mRNA_L-elsbetiae_contig1685.4603.1 ID=mRNA_L-elsbetiae_contig1685.4603.1|Name=mRNA_L-elsbetiae_contig1685.4603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1685:22971..24052+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAGGAGTGCGCTGCAGGCTGTCGTACACATCGGAGGTGGACGTGCAGG
CGAAAAAGAGGAGTGCGCTGCAGGCTGTCGTACACATCGGAGGTGGACGT
GCAGGCGAAATCGCTGGCTGGCTGTCGAGCAAGCTAGACATGGAGACGGT
AGAGAGACAAACGAGGGCGGGGAGAGAGGGGAAAGCGCAGCGAAAAAACA
GCAACAAGCGCCGTAAGGCTGGACATGAGCAAGGAGATGGTGGACACCCA
AGCGACGGTCATAGCAGGCAGGGGCAGCAGCGAGGTGGGATGGACAGCGC
CGGAGACAAGGCAGTAGCGCAGGGGGGGGGGGCAAAAGAACGAGGAGGAG
GAGGAGGAGCAGTGCCATCGCTGGCTGGCTGTCGAGCAAGCTAGACATGG
AGACGGTAGAGAGACAAACGAGGGCGGGGAGAGAGGGGAAAGCGCAGCGA
AAAAACAGCAACAAGCGCCGTAAGGCTGGACATGAGCAAGGAGATGGTGG
ACACCCAAGCGACGGTCATAGCAGGCAGGGGCAGCAGCGAGGTGGGATGG
ACAGCGCCGGAGACAAGGCAGTAGCGCAGGGGGGGGGGGCAAAAGAACGA
GGAGGAGGAGGAGGAGCAGTGCCA
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