mRNA_L-elsbetiae_contig16849.4598.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16849.4598.1
Unique NamemRNA_L-elsbetiae_contig16849.4598.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16849.4598.1 vs. uniprot
Match: D8LMK8_ECTSI (Heat shock protein 33 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.170e-16
Identity = 66/89 (74.16%), Postives = 71/89 (79.78%), Query Frame = -1 
Query:    1 SSTSRVRRYCAATPGEVPGADKDEDAKXXXXXXXXXXXXXXXXXXXXXESKAIADNTTPVGNNADHMVSAVAGNGQVVARAVTARNLLQ 267
            S TSRVRR CAATPGE     +D+ ++       XXXXXXXXXXXXXX  KAIADNT PVGN+ADHMVSAVAGNGQVVARAVTARNLLQ
Sbjct:   63 SCTSRVRRCCAATPGE---GSEDDSSQDPVEGSGXXXXXXXXXXXXXXGGKAIADNTAPVGNDADHMVSAVAGNGQVVARAVTARNLLQ 148
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BLAST of mRNA_L-elsbetiae_contig16849.4598.1 vs. uniprot
Match: A0A6H5KBS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.080e-15
Identity = 57/95 (60.00%), Postives = 61/95 (64.21%), Query Frame = -1 
Query:    1 RSSSCSSTSRVRRYCAA-TPGEVPGADKDEDAKXXXXXXXXXXXXXXXXXXXXXESKAIADNTTPVGNNADHMVSAVAGNGQVVARAVTARNLLQ 282
            RS SC  TSRVRRYCAA TPGE  GA+ D+ ++                     E K IAD T PV NNADHMVSAVAGNGQVVARAVTARNLLQ
Sbjct:  347 RSRSC--TSRVRRYCAAATPGE--GAE-DDSSQDPVEGSGGGKDAGAGDEGGEEEGKTIADITAPVANNADHMVSAVAGNGQVVARAVTARNLLQ 436
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16849.4598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMK8_ECTSI2.170e-1674.16Heat shock protein 33 n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5KBS9_9PHAE2.080e-1560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16849contigL-elsbetiae_contig16849:998..1648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size652
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.955185-CDS-L-elsbetiae_contig16849:997..13391622815699.955185-CDS-L-elsbetiae_contig16849:997..1339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16849 998..1339 +
1691683046.0788267-CDS-L-elsbetiae_contig16849:997..13391691683046.0788267-CDS-L-elsbetiae_contig16849:997..1339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16849 998..1339 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.965649-UTR-L-elsbetiae_contig16849:1339..16481622815699.965649-UTR-L-elsbetiae_contig16849:1339..1648Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16849 1340..1648 +
1691683046.0889106-UTR-L-elsbetiae_contig16849:1339..16481691683046.0889106-UTR-L-elsbetiae_contig16849:1339..1648Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16849 1340..1648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16849.4598.1prot_L-elsbetiae_contig16849.4598.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16849 998..1339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16849.4598.1

>prot_L-elsbetiae_contig16849.4598.1 ID=prot_L-elsbetiae_contig16849.4598.1|Name=mRNA_L-elsbetiae_contig16849.4598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
LEQVTRRHRTSHHLSVSSHRGNHVIRVVPHGGGVVGDRLTLAAAAAAAAA
FSTLPSRGIFGILCVFVLICPGNFPGGRGAVSTNSTCAAAAAGSMGRGCV
PHEARCGLGVERS*
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mRNA from alignment at L-elsbetiae_contig16849:998..1648+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16849.4598.1 ID=mRNA_L-elsbetiae_contig16849.4598.1|Name=mRNA_L-elsbetiae_contig16849.4598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=651bp|location=Sequence derived from alignment at L-elsbetiae_contig16849:998..1648+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGAGCAGGTTACGCGCCGTCACCGCACGAGCCACCACCTGTCCGTTTC
CAGCCACCGCGGAAACCATGTGATCCGCGTTGTTCCCCACGGGGGTGGTG
TTGTCGGCGATCGCCTTACTCTCGCCGCCGCCGCCGCCGCCGCTGCTGCC
TTCTCCACCCTCCCCTCCCGCGGGATCTTTGGGATCCTTTGCGTCTTCGT
CCTTATCTGCCCCGGGAACTTCCCCGGGGGTCGCGGCGCAGTATCGACGA
ACTCTACTTGTGCTGCTGCAGCTGCTGGATCGATGGGGCGAGGGTGCGTA
CCGCACGAGGCGCGATGCGGGCTTGGGGTTGAACGTAGTTGATCCACATG
CATGGTTTCGTGTTTTTGTATCTAAGGGCAGACATGCGTCTTATCGGGCC
GTGGCGATTGAGTGCACACATCCGTCAACGATAAGACTGTCCGAGGTAAG
GCTTCGGGGCTCCTGCGGGAAAGCAGCAGGCTCTCACAGGTAGTATACCG
TAGGTGACATAAGATAAGACACCCCCTGGACCGATATTGAAAGCTTGGTT
ACTCAGCAACGAATACGATTCTAACCACAAACGCCACATTTTCGGAAAGC
TCTCGACGAGATCTTTCCAACGCCGCCCTTTTCGGGACTGACGCTCTGCT
T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16849:998..1648+

>mRNA_L-elsbetiae_contig16849.4598.1 ID=mRNA_L-elsbetiae_contig16849.4598.1|Name=mRNA_L-elsbetiae_contig16849.4598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig16849:998..1648+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGAGCAGGTTACGCGCCGTCACCGCACGAGCCACCACCTGTCCGTTTC
CAGCCACCGCGGAAACCATGTGATCCGCGTTGTTCCCCACGGGGGTGGTG
TTGTCGGCGATCGCCTTACTCTCGCCGCCGCCGCCGCCGCCGCTGCTGCC
TTCTCCACCCTCCCCTCCCGCGGGATCTTTGGGATCCTTTGCGTCTTCGT
CCTTATCTGCCCCGGGAACTTCCCCGGGGGTCGCGGCGCAGTATCGACGA
ACTCTACTTGTGCTGCTGCAGCTGCTGGATCGATGGGGCGAGGGTGCGTA
CCGCACGAGGCGCGATGCGGGCTTGGGGTTGAACGTAGTTGACTGGAGCA
GGTTACGCGCCGTCACCGCACGAGCCACCACCTGTCCGTTTCCAGCCACC
GCGGAAACCATGTGATCCGCGTTGTTCCCCACGGGGGTGGTGTTGTCGGC
GATCGCCTTACTCTCGCCGCCGCCGCCGCCGCCGCTGCTGCCTTCTCCAC
CCTCCCCTCCCGCGGGATCTTTGGGATCCTTTGCGTCTTCGTCCTTATCT
GCCCCGGGAACTTCCCCGGGGGTCGCGGCGCAGTATCGACGAACTCTACT
TGTGCTGCTGCAGCTGCTGGATCGATGGGGCGAGGGTGCGTACCGCACGA
GGCGCGATGCGGGCTTGGGGTTGAACGTAGTTGA
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