mRNA_L-elsbetiae_contig1683.4590.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1683.4590.1
Unique NamemRNA_L-elsbetiae_contig1683.4590.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Match: A0A8J5XYI5_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYI5_DIALT)

HSP 1 Score: 113 bits (282), Expect = 7.590e-24
Identity = 118/385 (30.65%), Postives = 166/385 (43.12%), Query Frame = 3 
Query:  219 AATFSLCGGYLVCASDSGRLAVWELAQHMDTDKQSFSTSDTT-PDMSWRADRSCINCLAFAG----DLLLCGGDESLFGCSWAAILSALEQGTPPQPSSWSSDVGDSEECVLRVRCPQ--GAAGTGARNPEINGVRFDKTTKRVLCAAGDGNAYEWDLQSLGAAAAGSDKDNTSLVRTYEGGKGYLHAVVSTPGSSVVATGSDDGYVGVWDSRVKNAAAGANIALLRPAHAQAGDGKEASPGARDSKPDNAACVTSLEMGDGGDTIVCGGRRTGGAVIAGGILEPTVGRGWVNQWNLADLKATEVASLP---AEVQCMHLTEQRQTLLVAGAESTLT--SLGRSQLERKARTPVTPRSVYALAANGTGPHEGLTCVAGVGPAVEV 1337
            AA FS  G +LVCA+ SGR+ VW +A  +     + S S       S+ A  + +  L FA      LL+ GGD  + G +W A + A  +G  P P+              R+  P+  GA G+     E NG+  D+  + +  AAGDGNAY WDL +              LVR + G +GYLH V S P +  + TGS+DG   +WD RV  +AA      LRP     G G   S           A V + E     D +VCG    G AV+                W+L     T  A++P   A  Q         ++L  GAE ++   +L  S ++R   T  +   V +  A+G G   GL  V G GP V++
Sbjct:    5 AALFSPDGAHLVCAASSGRVHVWAVAPALGRAATADSASPHDGAHASFAAHGNAVYSLHFASVQGHQLLVTGGDTDIAGWAWPAAVEAAARGETPAPA-------------FRLEHPRAMGALGSVGALSECNGLAVDERERALYTAAGDGNAYAWDLGTC------------KLVRNFAGHEGYLHCVASRPHARQIVTGSEDGTARLWDVRVAESAA-----TLRP---PGGAGGWCS----------CAQVDATE-----DWLVCG---WGAAVLT--------------TWSLTAQTCT--AAMPTGAAPQQLRFAAHSPSSVLSVGAEPSVYEWTLAGSLVQRVTCTSTSLFGVDSTTAHGDG---GLIAVCGNGPRVQL 319
[Close]
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Match: A0A7S3V0P1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V0P1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.320e-14
Identity = 65/236 (27.54%), Postives = 108/236 (45.76%), Query Frame = 3 
Query:  207 VTVTAATFSLCGGYLVCASDSGRLAVWELAQHM----------DTDKQSFSTSDTTP--------DMSWRADRSCINCLAFAGDLLLCGGDESLFGCSWAAILSALEQGTPPQPSSWSSDVGDSE--ECVLRVRCPQGAAGTGARNP--EINGVRFDKTT--KRVLCAAGDGNAYEWDLQSLGAAAAGSDKDNTSLVRTYEGGKGYLHAVVSTPGSSVVATGSDDGYVGVWDSRVK 842
            VTV  + F+  G YL C+ + G++ +W +  ++          +T  ++  T  T          D   +A ++ I  +A   + L+ G DE + G  W      + QG+    +    D G +   +C+  ++ PQ     G+ +P  E NG+  D+ T  K V  AAGDGNAY WDL++              ++ T+ G   YLH +     + ++ATGS+DG   +WD R K
Sbjct:    6 VTVFGSGFTPDGRYLACSDNFGQVGIWNMEYYLFQNSNWVHDNETKTEALETISTNSNLGAGVEKDFLLKAHKTPIYSIAVTENFLITGADEEIKG--WKTPW--MNQGSTSSNAKSDVDGGGNAVGKCLFELKTPQLEGLRGSLSPWAETNGIAVDEVTNTKYVFSAAGDGNAYCWDLETQ------------KVLTTFSGHSDYLHCISLICQNGLIATGSEDGTCKLWDRRAK 225
[Close]
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Match: UPI000D1CC3CC (THO complex subunit 6-like n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CC3CC)

HSP 1 Score: 70.1 bits (170), Expect = 3.090e-9
Identity = 51/146 (34.93%), Postives = 68/146 (46.58%), Query Frame = 3 
Query:  405 LLLCGGDESLFGCSWAAILSALEQGTPPQPSSWSSDVGDSEECVLRVRCPQGAAGTGARNP--EINGVRFDKTTKRVLCAAGDGNAYEWDLQSLGAAAAGSDKDNTSLVRTYEGGKGYLHAVVSTPGSSVVATGSDDGYVGVWDSR 836
            L  CG D  +    W  +L  L        S  SSD+   E  VL ++ PQ     G+  P  E NG+  D  T  + CAAGDG AY WDL++             S+V  ++G  GYLH + S P    + TGS+DG   +WD R
Sbjct:  104 LASCGDDGRIAIWRWNDVLERLG-------SDSSSDM--QERPVLEMKIPQQRGQHGSLLPVAEANGLAADAGT--LFCAAGDGCAYGWDLET----------GQGSMV--FQGHAGYLHCIASRPSQKQLITGSEDGTCRIWDCR 226
[Close]
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Match: A0A3P3YK09_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YK09_PLABS)

HSP 1 Score: 68.6 bits (166), Expect = 8.450e-9
Identity = 59/214 (27.57%), Postives = 85/214 (39.72%), Query Frame = 3 
Query:  210 TVTAATFSLCGGYLVCASDSGRLAVWE---LAQHMDTDKQSFSTSDTTPDMSWRADRSCINCLAFAGDLLLCGGDESLFGCSWAAILSALEQGTPPQPSSWSSDVGDSEECVLRVRCPQGAAGTGARNP--EINGVRFDKTTKRVLCAAGDGNAYEWDLQSLGAAAAGSDKDNTSLVRTYEGGKGYLHAVVSTPGSSVVATGSDDGYVGVWDSR 836
            TV    FS  G  L        L VWE   +A  +D  ++     DTT  M   A    I  + FA + L+ GGD S+                      W  D+   EE +L +  PQG    G      E NG+ +   T+ +  A+G   A++WDL +              +V  + G   YLH +      S + TGS+DG+V +WD R
Sbjct:   30 TVFTCAFSNDGSLLAAGDSRSALNVWETSSVAGEVDKCQRFAMPLDTTCRMRTNARAGPIYSVVFAENRLVSGGDLSI--------------------KVW--DIDCVEEPLLELVNPQGTTAAGGLTAVSETNGLAYCSETRALFSASGQAAAFQWDLST------------GQVVMRFAGHDDYLHCISMGVTPSTILTGSEDGFVRLWDIR 209
[Close]
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Match: A0A7S2N521_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N521_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 5.990e-8
Identity = 40/110 (36.36%), Postives = 51/110 (46.36%), Query Frame = 3 
Query:  360 RADRSCINCLAFA----GDLLLCGGDESLFGCSWAAILSALEQGTPPQPSSWSSDVGDSEECVLRVRCPQGAAGTGARNP--EINGVRFDKTTKRVLCAAGDGNAYEWDL 671
            RA R  +  LAFA    G +LL G DE + G  W A+L A   G  P P             +LR+   + + G GA     E + +  D    R+  AAGDGNAY WDL
Sbjct:    1 RAHRCAVYALAFAETKSGLVLLSGADEEICGWRWDAVLGAANGGAVPAP-------------MLRLENARASLGRGALGQLSETSALSVDAAAGRLYSAAGDGNAYAWDL 97
[Close]
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Match: A0A7S2WDE8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WDE8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.280e-7
Identity = 36/107 (33.64%), Postives = 53/107 (49.53%), Query Frame = 3 
Query:  528 ECVLRVRCPQGAAGTGARNP--EINGVRFDKTTKRVLCAAGDGNAYEWDLQSLGAAAAGSDKDNTSLVRTYEGGKGYLHAVVSTPGSSVVATGSDDGYVGVWDSRVK 842
            + +  +R PQ     G+ +P  E NG+      + +  AAGDGNAY WD+ +              L   + G K YLH++VS   + ++ATGS+DG    WD R K
Sbjct:    5 DAIGELRIPQLEGSRGSLSPLAETNGLTSLNKGQTLAAAAGDGNAYCWDVATQ------------VLTHCFSGHKDYLHSIVSLERNGLIATGSEDGTCKFWDVREK 99
[Close]
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Match: A0A7S2RUV4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RUV4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.490e-7
Identity = 36/107 (33.64%), Postives = 53/107 (49.53%), Query Frame = 3 
Query:  528 ECVLRVRCPQGAAGTGARNP--EINGVRFDKTTKRVLCAAGDGNAYEWDLQSLGAAAAGSDKDNTSLVRTYEGGKGYLHAVVSTPGSSVVATGSDDGYVGVWDSRVK 842
            + +  +R PQ     G+ +P  E NG+      + +  AAGDGNAY WD+ +              L   + G K YLH++VS   + ++ATGS+DG    WD R K
Sbjct:   94 KAIGELRIPQLEGSRGSLSPLAETNGLTSLNKGQTLAAAAGDGNAYCWDVATQ------------VLTHCFSGHKDYLHSIVSLERNGLIATGSEDGTCKFWDVREK 188
[Close]
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Match: A0A8J4ANR3_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ANR3_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 4.020e-6
Identity = 77/258 (29.84%), Postives = 109/258 (42.25%), Query Frame = 3 
Query:  627 VLCAAGDGNAYEWDLQSLGAAAAGSDKDNTSLVRTYEGGKGYLHAVVSTPGSSVVATGSDDGYVGVWDSRVK----NAAAGANIALLRPAH----AQAGDGKEASPGARDSKPDNAACVTSLEMGDGGDTIVCGGRRTGGAVIAGGILEPTVGRGWVNQWNLADLKATEVASLPAEVQCMHLTEQRQTLLVAGAESTLTSLGRSQLERKARTPVTPRSVYALAANGTGPHEGLTCVAGVGPAVEVYTMPGVSSKTLCF 1376
            V     DG  Y  DL S GA ++ S   + + V   +     LH       SS +ATGS+DG V +WDSR+      A  G  + +L  A     A  G G E     R+        VT L     G  ++CG    GG+  AGG      G G ++ WNL+   A      P       +  Q   LLV G+E+ L+    + LE     P+  RSV+AL  +   P  G   V GVG ++E+ +  G  +  + F
Sbjct:  229 VFAGCSDGGVYCLDLSS-GAVSSPSGAGHVAAVLAMD-----LHEP-----SSCLATGSEDGTVRLWDSRLGLRGGTAGGGRCVRVLDSAAGREVAGGGGGTEVLQCLRNPP------VTCLRFEPSGSWLLCG---QGGSGAAGG------GIGSLSLWNLS--MAQRARQAPTNFVPQAMAVQPAELLVVGSEAALSRYSLA-LEGPTLQPLATRSVFALDVH---PLTGAVAVGGVGASLELLSKYGKRTGGVAF 454
[Close]
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Match: A0A671WFV7_SPAAU (THO complex 6 n=9 Tax=Sparidae TaxID=8169 RepID=A0A671WFV7_SPAAU)

HSP 1 Score: 58.9 bits (141), Expect = 1.220e-5
Identity = 79/394 (20.05%), Postives = 143/394 (36.29%), Query Frame = 3 
Query:  207 VTVTAATFSLCGGYLVCASDSGRLAVWELAQHMDTDKQSFSTSDTTPDMSWRADRSCINCLAFAGDLLLCGGDESLFGCSWAAILSALEQGTPPQPSSWSSDVGDSEECVLRVRCPQGAAGTGARNPEINGVRFDKTTKRVLCAAGDGNAYEWDLQSLGAAAAGSDKDNTSLVRTYEGGKGYLHAVVSTPGSSVVATGSDDGYVGVWDSRVKNAAAGANI----ALLRPAHAQAGDGKEASPGARDSKPDNAACVTSLEMGDGGDTIVCGGRRTGGAVIAGGILEPTVGRGWVNQWNLADLKATEVASLPAEVQCMHLTEQRQTLLVAGAESTLTSLGRSQLERKARTPVTPRSVYALAANGTGPHEGLTCVAGVGPAVEVYTMPGVSSKTLCF 1376
            ++V + +FS CG YL   ++ G +A++ L+  +  D    +     P +++ A    +  L  +   LL  G+  +   SW  ++  +      Q        G   + ++               PEIN +  +     ++   GD N +  DL+            +       +G   Y+H V      + + +GS+DG V +WDSR+  +     +    +  RP +     GK  S            CVT+       D ++CGG  +                  ++ W+L  L  T +  L     C       Q +++A  +    S      E KA+ P TP+S+  L  N       +    G    +EV+T     + +L F
Sbjct:   49 MSVFSQSFSPCGRYLAAGNNYGEIALFSLSAALSPDA---TVQSQKPVLTFTAHEGPVFTLISSDCHLLSAGNGEISAWSWTELIKKVTVSLNTQQP------GKQHDLII---------------PEINAMIINPRDNSLVVGGGDNNVHILDLE------------HGVFKSVLQGHSDYIHCVSVREREADILSGSEDGAVRIWDSRMDQSVHCIEVYKYESCARPQY-----GKWIS------------CVTTDS-----DWMLCGGGPS------------------LSLWHLRSLSPTSIFPLTG---CQRQAAFHQDMILAVGDGPFVSHCLLGGEVKAQIPCTPQSLNTLQLNTNSTEHRVLTAGGSSDHIEVFTNLSYRAFSLSF 363
[Close]
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Match: A0A2R5GHA7_9STRA (THO complex subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHA7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.050e-5
Identity = 57/167 (34.13%), Postives = 74/167 (44.31%), Query Frame = 3 
Query:  354 SWRADRSCINCLAFAGD--LLLCGGDESL--FGCSWAAILSALEQGTPPQPSSWSSDVGDSEECVLRVRCPQGAAGTGARNP--EINGVRFDKTTKRVLCAAGDGNAYEWDLQSLGAAAAGSDKDNTSLVRTYEGGKGYLHAVVSTPGSSVVATGSDDGYVGVWDSR 836
            S+RA  S I  LA   D  L+  G DE +  +   WA   S+        PS            V   R PQ     GA +P  E NG+        ++ AAGDGNAY +D+        G+ K    LV    G +  LHAVV+   S +VATGS+DG   +WD R
Sbjct:   99 SFRAHESAIYTLAQHRDANLVFTGADEEIRVWRAPWAEEYSS--------PSH-----------VAEFRVPQIKGARGALSPVAETNGLAMLDKGATLVAAAGDGNAYLFDV--------GTQK----LVHKLPG-QDMLHAVVAMERSGLVATGSEDGLCRLWDPR 233
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1683.4590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A8J5XYI5_DIALT7.590e-2430.65Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S3V0P1_9STRA1.320e-1427.54Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
UPI000D1CC3CC3.090e-934.93THO complex subunit 6-like n=2 Tax=Selaginella moe... [more]
A0A3P3YK09_PLABS8.450e-927.57Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A7S2N521_9EUKA5.990e-836.36Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S2WDE8_9STRA2.280e-733.64Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2RUV4_9STRA7.490e-733.64Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8J4ANR3_9CHLO4.020e-629.84Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A671WFV7_SPAAU1.220e-520.05THO complex 6 n=9 Tax=Sparidae TaxID=8169 RepID=A0... [more]
A0A2R5GHA7_9STRA4.050e-534.13THO complex subunit 6 n=1 Tax=Hondaea fermentalgia... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1683contigL-elsbetiae_contig1683:13569..18497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue9.5e-21
Seed eggNOG ortholog164328.Phyra73772
Preferred nameTHOC6
KEGG koko:K03257,ko:K13175,ko:K18327
KEGG Pathwayko03013,map03013
KEGG ModuleM00405,M00406,M00428
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000346,GO:0000347,GO:0000445,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006464,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0007275,GO:0007399,GO:0007417,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009266,GO:0009408,GO:0009628,GO:0009787,GO:0009788,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010267,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016567,GO:0016604,GO:0016607,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030422,GO:0031047,GO:0031050,GO:0031123,GO:0031124,GO:0031461,GO:0031503,GO:0031974,GO:0031981,GO:0031990,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033554,GO:0034605,GO:0034613,GO:0034641,GO:0035194,GO:0036211,GO:0040029,GO:0042221,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044417,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044766,GO:0045184,GO:0046483,GO:0046784,GO:0046907,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051716,GO:0051836,GO:0060255,GO:0060548,GO:0065007,GO:0070013,GO:0070647,GO:0070727,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071407,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080008,GO:0090304,GO:1901360,GO:1901419,GO:1901420,GO:1901564,GO:1901698,GO:1901699,GO:1902494,GO:1902579,GO:1905957,GO:1905958,GO:1990234
EggNOG free text desc.WD40 repeats
EggNOG OGs3QBH1@4776,KOG0649@1,KOG0649@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03012,ko03019,ko03041,ko04147
Exons10
Model size1751
Cds size1284
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1683.4590.1prot_L-elsbetiae_contig1683.4590.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1683 14290..18128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.1879673-UTR-L-elsbetiae_contig1683:13568..136111622815699.1879673-UTR-L-elsbetiae_contig1683:13568..13611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1683 13569..13611 +
1691683045.6403692-UTR-L-elsbetiae_contig1683:13568..136111691683045.6403692-UTR-L-elsbetiae_contig1683:13568..13611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1683 13569..13611 +
1622815699.198246-UTR-L-elsbetiae_contig1683:14234..142891622815699.198246-UTR-L-elsbetiae_contig1683:14234..14289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1683 14235..14289 +
1691683045.6512568-UTR-L-elsbetiae_contig1683:14234..142891691683045.6512568-UTR-L-elsbetiae_contig1683:14234..14289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1683 14235..14289 +
1622815699.3313935-UTR-L-elsbetiae_contig1683:18128..184971622815699.3313935-UTR-L-elsbetiae_contig1683:18128..18497Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1683 18129..18497 +
1691683045.763706-UTR-L-elsbetiae_contig1683:18128..184971691683045.763706-UTR-L-elsbetiae_contig1683:18128..18497Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1683 18129..18497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.2124243-CDS-L-elsbetiae_contig1683:14289..143511622815699.2124243-CDS-L-elsbetiae_contig1683:14289..14351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 14290..14351 +
1691683045.6595635-CDS-L-elsbetiae_contig1683:14289..143511691683045.6595635-CDS-L-elsbetiae_contig1683:14289..14351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 14290..14351 +
1622815699.2275069-CDS-L-elsbetiae_contig1683:14653..148241622815699.2275069-CDS-L-elsbetiae_contig1683:14653..14824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 14654..14824 +
1691683045.6678262-CDS-L-elsbetiae_contig1683:14653..148241691683045.6678262-CDS-L-elsbetiae_contig1683:14653..14824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 14654..14824 +
1622815699.2416036-CDS-L-elsbetiae_contig1683:15255..153391622815699.2416036-CDS-L-elsbetiae_contig1683:15255..15339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 15256..15339 +
1691683045.6855762-CDS-L-elsbetiae_contig1683:15255..153391691683045.6855762-CDS-L-elsbetiae_contig1683:15255..15339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 15256..15339 +
1622815699.2535765-CDS-L-elsbetiae_contig1683:15700..158991622815699.2535765-CDS-L-elsbetiae_contig1683:15700..15899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 15701..15899 +
1691683045.6975124-CDS-L-elsbetiae_contig1683:15700..158991691683045.6975124-CDS-L-elsbetiae_contig1683:15700..15899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 15701..15899 +
1622815699.2635381-CDS-L-elsbetiae_contig1683:16240..163931622815699.2635381-CDS-L-elsbetiae_contig1683:16240..16393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 16241..16393 +
1691683045.7110922-CDS-L-elsbetiae_contig1683:16240..163931691683045.7110922-CDS-L-elsbetiae_contig1683:16240..16393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 16241..16393 +
1622815699.2734683-CDS-L-elsbetiae_contig1683:16624..168281622815699.2734683-CDS-L-elsbetiae_contig1683:16624..16828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 16625..16828 +
1691683045.7214062-CDS-L-elsbetiae_contig1683:16624..168281691683045.7214062-CDS-L-elsbetiae_contig1683:16624..16828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 16625..16828 +
1622815699.2832863-CDS-L-elsbetiae_contig1683:17092..172511622815699.2832863-CDS-L-elsbetiae_contig1683:17092..17251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 17093..17251 +
1691683045.7303617-CDS-L-elsbetiae_contig1683:17092..172511691683045.7303617-CDS-L-elsbetiae_contig1683:17092..17251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 17093..17251 +
1622815699.2997916-CDS-L-elsbetiae_contig1683:17390..175581622815699.2997916-CDS-L-elsbetiae_contig1683:17390..17558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 17391..17558 +
1691683045.7386963-CDS-L-elsbetiae_contig1683:17390..175581691683045.7386963-CDS-L-elsbetiae_contig1683:17390..17558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 17391..17558 +
1622815699.3130374-CDS-L-elsbetiae_contig1683:18044..181281622815699.3130374-CDS-L-elsbetiae_contig1683:18044..18128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 18045..18128 +
1691683045.7512643-CDS-L-elsbetiae_contig1683:18044..181281691683045.7512643-CDS-L-elsbetiae_contig1683:18044..18128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 18045..18128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1683.4590.1

>prot_L-elsbetiae_contig1683.4590.1 ID=prot_L-elsbetiae_contig1683.4590.1|Name=mRNA_L-elsbetiae_contig1683.4590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=428bp
MFSYTASFDGQGSRCPADFSRDAYARGLQQERLRAAVTVTAATFSLCGGY
LVCASDSGRLAVWELAQHMDTDKQSFSTSDTTPDMSWRADRSCINCLAFA
GDLLLCGGDESLFGCSWAAILSALEQGTPPQPSSWSSDVGDSEECVLRVR
CPQGAAGTGARNPEINGVRFDKTTKRVLCAAGDGNAYEWDLQSLGAAAAG
SDKDNTSLVRTYEGGKGYLHAVVSTPGSSVVATGSDDGYVGVWDSRVKNA
AAGANIALLRPAHAQAGDGKEASPGARDSKPDNAACVTSLEMGDGGDTIV
CGGRRTGGAVIAGGILEPTVGRGWVNQWNLADLKATEVASLPAEVQCMHL
TEQRQTLLVAGAESTLTSLGRSQLERKARTPVTPRSVYALAANGTGPHEG
LTCVAGVGPAVEVYTMPGVSSKTLCFA*
back to top

mRNA from alignment at L-elsbetiae_contig1683:13569..18497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1683.4590.1 ID=mRNA_L-elsbetiae_contig1683.4590.1|Name=mRNA_L-elsbetiae_contig1683.4590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4929bp|location=Sequence derived from alignment at L-elsbetiae_contig1683:13569..18497+ (Laminarionema elsbetiae ELsaHSoW15)
GCATCATCCTCTCGATCGACCCCTCCCTCCCCGAAGGCACGCGGTGAGTA
AAGCGATAATTTTTTTTGTTTCTTTGTTTGATGATCGAACTGCGGTGATC
GCTAGTAGAATTGTGTACATATGCTGACCCAATATTGCGCACTCGCTCGT
GACTGAAAAACATTCAAACGGTTCTACCGCACACACGATGACCGATGACC
CTCTCGCAAAAACAAACAAAACGGGGCATGCCTGGCATTTTTTCTCCTAG
CCTACGTGCCCTTGAAGAAGAGGGGGGTTTTGAATCGTTCACTTTAAACG
CCGAACCCTTCGGGTACCGTGCATTATGCTCGAAAATATCCTATTTACAG
GAAAACTTGGTGGCGGCCCTTATCTCCGCGTCCAGCACGGTAGAACTTGG
TGGTGCCCTATGTATGCATTACATGTATCACGACTCGGACCCTGTGGCAA
AGTGGTATTCATCAACGTGTTTGATGTTGACATTCAAACCCAAGCTTTCC
TCTCCCCAAAGGAGATGATGTGACTGCTATAAGCAGGTAATATATATATT
CTATCGTATAGCACTACATACTGCTGCTGTTTCCACCTGCGGGCCCACCA
GACGGTCTTCCGTGCATGGCACACACCATATCTGCGGTGTTCCGTATGTC
CCCTTTTCATCGTCAGAGAACAGCAACAGCCGGCGAATACGGTGGCGCGA
AGCTGAGCGAAGGAGGCCAGTATGTTCAGCTACACCGCCAGCTTTGATGG
CCAAGGTTCCCGCTGCCCAGCTGACTTCTCGAGGTGAGATGATGCTGATA
CTGGTTGTTCTACATATTATACGCCGAGACAGCACAAACTAAACTGAAGC
TGCTCAGTAGAAGCAGCACTAGTCACTCGCACGCGCTGCAGGGTCATATA
TTGGGGTGCTCACATTGGGTCGTCTAGCCCGTCGTAGTGGAGGAAGGGGG
CCAGTGGAGCAGACGACAAATAAGCCAATAGTGGGAGGAATACCACAAAA
GAGGCGACGCTTAATTACGCCGCAGAAACACCCGCCTCCCTCCCTCTATT
TCGCTTGCCCCCGTGCCGGACGCACATTCATGTAGGGACGCCTACGCCAG
GGGGCTCCAGCAGGAGCGATTGAGGGCCGCTGTGACGGTCACCGCAGCGA
CATTTTCTCTGTGCGGGGGCTACCTCGTCTGCGCGTCGGACTCGGGAAGG
CTCGCCGTGTGGGAGCTGGCGCAGCACATGGACACGGACAAGCAGTCGTT
TTCGACGTGAGTGAAGTATGTTTCTGTTTGTGGTGCTTTTGGATATCCGT
CCGGTATGCGTGTCCCCTCAGGGGGCTACGTGTGTGCAGTGTGCTGGGAG
ATACGGGTGGACCTCGCAAGAAACGATATAGGAACCGACGAGCCCGCAAC
TTACCTTCTGAAGATATGACGTCCCTGCCGTTCCTGGGTATGTACTTAAT
TCCCATACTCAGCACCAATCGCAAGACAGCGCGGTGGCCCCTCGAACAAA
GTCCACCCTATCTCTCTGTGTGTGTGTCTCTCTCTCCCTCTCTCTCTTGA
GCATTTTTCGCGGGAGTTCTCTTTGTGTAGAGCAGCGAATGAAGTGCATA
CCATGACGTGAAATGAGCACGCCCCAGGATTTATAACGAAGTTGTGCTTT
CTCTGTCGCTTTTTTTTTGCCGTCTCGTTGTTTCCAGATCCGACACCACT
CCCGACATGTCCTGGCGAGCAGACAGGTCATGCATCAACTGTCTTGCCTT
CGCGGGGGACCTGCTGCTGTGGTGAGCTGTGGTTGTCTTTAGGTGCTGGT
TTGGTGATAAAATATGTGGTGTTTTTTCTGGTCGTGGTTGACTTTCGGAT
ATTTCAAGCTCGCAGGCAGGCACTTCCGCCCCTTCAGAGGTTGACTCTCT
TTACGTAACTGCTGTTATTTGAAGTTGCCCATATGGAACTGGCAGTTTGT
ATCTCCACAACCAGCCACGAGCAAGATCACACGCACCATGTTCTTGCGAT
AAATTGCAGACGGTATTAGGGCTATGAGAGGAGGGGCAATGCGAGTCAAC
TCCTTTCCCATGTACATGGACGATTCACGACCCCCTGGCTTTAATCCTGC
CTGCTGACCGCATCCCCTCGGAAAAACCAAAGCGGAGGAGATGAGTCTCT
CTTTGGCTGTTCGTGGGCTGCGATTCTCTCGGCCTTGGAGCAAGGGACGC
CCCCCCAGCCTTCATCTTGGTCGTCCGACGTGGGGGACTCCGAAGAGTGC
GTGCTGCGCGTGCGATGTCCGCAGGGGGCGGCAGGGACGGGGGCGAGGAA
TCCCGAGATTAACGGCGTCAGGTTTGACAAGGTTTGTGCGGTTTGAGCAC
AAGTTGTACATACCTGTTGATGTTGGTCTTGCTGTTGGTTGTGAGTGCAC
CATTGTTGTTGTTGTGCTCCTGTTGTTGCTGTTAGGGCTGCTGCTGCTGC
TGCTGCTGCTGCTGATGTCACGAACTCGATACTCGGCGTGACGCTACACC
GCTCATCAGATCTTTAGAAAAGGCTCGACGGATGCACGCATATCGAGAAC
GACCGAATCCCCGTGTTGCTTTCAATTGTCGCGGGTGGTTGGTACATGCA
TAAAGTACCACATGTATGTACGTGATATCCTGGGATTCCTCCTTCCAAAC
CTTGGCGGCAAACTCGACACAGACGACCAAGAGAGTCCTCTGCGCGGCCG
GAGACGGGAACGCCTACGAGTGGGACCTACAATCCCTCGGAGCAGCCGCG
GCAGGAAGTGACAAGGACAATACCTCGCTGGTCCGCACATACGAAGGCGG
CAAGGGGTATCTTCACGCCGTGGTGGTAAGCAGAGTCTTTGCTGAGATGA
CGAATTTGATGCCCCACCCCCCGTGCCTGGATGATATGCCAGCCTGTCAC
GCAGAGAGGCACTCGTGCAGCGATATTGACGCCTGCCGATCCAATGTGAC
AAAGCAGCAAACGTCGCCACCAGATGCAGATGATTATTCCGCTATTTTAT
GCCTCCGCCAACTTTGATGCCTCCGTGCCATGTGAACGCACCCGTTTCTC
CCCCAGAGCACTCCCGGTTCGTCTGTGGTGGCCACCGGATCCGACGACGG
ATACGTGGGGGTGTGGGACAGTAGGGTAAAAAACGCTGCAGCGGGAGCGA
ACATTGCGCTCCTGAGACCAGCACATGCGCAGGCAGGGGATGGAAAGGAA
GCGTCCCCGGGTGCGCGGGACAGCAAGCCCGACAACGCCGCGTGTGTCAC
GAGCCTCGAGGTGGGTCGCCTGTTGTGGTCATTTTCCTCTTTGGTGTATT
CTGTGTTTTTTGTGTCTAATCTGTCTGCCCGGTTGTTGATCGCTTCAGCC
TCGGCGACTTCTTGAAACACATTCGCGGATCATTGCTGTTCGGTTCCTCG
CGCTCACTCACTGACACGTCGCACTCAGATTGGCCGAAGTCACACGCAAT
GGAGGCGGTCAACCCGTGTGTCGTTGTTTCATCCGACTGTCTTGACCCTG
CCTGCGTTCGTGCTCGCGCGGCAGATGGGCGATGGCGGCGACACGATCGT
GTGCGGGGGGCGGCGGACGGGGGGGGCTGTGATCGCAGGAGGAATTCTAG
AGCCCACGGTAGGGCGGGGTTGGGTGAACCAATGGAACCTGGCCGATCTC
AAGGCCACCGAGGTCGCTTCACTTCCCGCTGAGGTATGGGGGCGTACCAT
GCGTATGGGGGACTCGAACGGCCCACACTTTGTGTATTTCTGCAAGTAGG
ACTCCCCGCATAAACGGAGCAGCCATTGCAAGTACTTTTGGTTTCGGCTC
TTCACCTTTTTCCCTTCCACAGGTGCAGTGCATGCACTTGACGGAGCAGC
GCCAGACTCTCCTCGTGGCGGGAGCAGAGTCGACGCTCACCTCCCTCGGC
CGGAGCCAGCTCGAGAGGAAAGCTCGTACGCCGGTGACCCCCCGCTCGGT
CTACGCGCTGGCCGCCAACGGCACGGGTCCCCACGAGGGGGTGAGAACTT
GGATCTATCACGTCTCGGTTTTGATCTTTTTGTTTCCGCTCGGTGGAAGC
AGTTTTGTTTCATGGCCTGAGCGGAGAAGAATCGCTGATGGTAACATTTG
TTGGCCGGGCTGGGGTGCACGCTGCTGTGGCTCCATTTGTGTTTGTACAT
GTGTCAAAAATCGAATTTCTAGTTTGTGGATATTTGCTGGTGCCAAATAT
GTAGTACATAAATCCCCGGTGCTTTCCCACCTGCTGGTATGCCAAGTTTT
ACGGAGAACATGCATCGAAAAAATATAGTACACACCGGGAAGGTGTGGCA
ACTTACACCGAGAGGTTTGGAAGCACACCGCAAGGTGATAAACGCCAGAA
GAGGTGAGACAAAAGCACAAACCTGACAACACTGCTGTCGAGACTGGTTT
CACCTAGGCTACCCTGACTCCCTCCTCCCCCGCTACCGACTCGTTTTCGT
CTCGTCGTCCGATCGGTGCCATGTAGCTGACCTGTGTCGCGGGCGTGGGG
CCTGCGGTGGAAGTGTACACAATGCCGGGGGTGTCGTCGAAGACCCTGTG
CTTCGCGTGAGAGTGTTTCGTAAGAGAAAAGCGAGGCACACCCGAGCGAC
GGCGGTTGCAGTGCTGTGAAGCTATGTATCGCGAAGCTTGCATCGTGACC
TCTGTGTATTGTTGTTGTTGGACAATGTTTTCGTACAGTCTGCATAGTGC
AGCAGCCCCCTGCGCGCTGACAACCAGAAAACACGTATGGTTGAGACACA
CGCAGCATATGTGTGAAAGTAGGTTTGCGGGTTCGCGTGTGGGGGTTTCA
TCTGTCTTCCATGTTCATTAAGCCTTCCGTTGTAGTTTCAAGTCTATAGA
GACTCATTTACTTAGACTAGACTAGTGAGGTGTGTTGTGACTCAAGCGGA
AAATCGGCCCGTTTTCTCGCCGAAAACAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1683:13569..18497+

>mRNA_L-elsbetiae_contig1683.4590.1 ID=mRNA_L-elsbetiae_contig1683.4590.1|Name=mRNA_L-elsbetiae_contig1683.4590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2568bp|location=Sequence derived from alignment at L-elsbetiae_contig1683:13569..18497+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCAGCTACACCGCCAGCTTTGATGGCCAAGGTTCCCGCTGCCCAGC
TGACTTCTCGAGATGTTCAGCTACACCGCCAGCTTTGATGGCCAAGGTTC
CCGCTGCCCAGCTGACTTCTCGAGGGACGCCTACGCCAGGGGGCTCCAGC
AGGAGCGATTGAGGGCCGCTGTGACGGTCACCGCAGCGACATTTTCTCTG
TGCGGGGGCTACCTCGTCTGCGCGTCGGACTCGGGAAGGCTCGCCGTGTG
GGAGCTGGCGCAGCACATGGACACGGACAAGCAGTCGTTTTCGACGGACG
CCTACGCCAGGGGGCTCCAGCAGGAGCGATTGAGGGCCGCTGTGACGGTC
ACCGCAGCGACATTTTCTCTGTGCGGGGGCTACCTCGTCTGCGCGTCGGA
CTCGGGAAGGCTCGCCGTGTGGGAGCTGGCGCAGCACATGGACACGGACA
AGCAGTCGTTTTCGACATCCGACACCACTCCCGACATGTCCTGGCGAGCA
GACAGGTCATGCATCAACTGTCTTGCCTTCGCGGGGGACCTGCTGCTGTG
ATCCGACACCACTCCCGACATGTCCTGGCGAGCAGACAGGTCATGCATCA
ACTGTCTTGCCTTCGCGGGGGACCTGCTGCTGTGCGGAGGAGATGAGTCT
CTCTTTGGCTGTTCGTGGGCTGCGATTCTCTCGGCCTTGGAGCAAGGGAC
GCCCCCCCAGCCTTCATCTTGGTCGTCCGACGTGGGGGACTCCGAAGAGT
GCGTGCTGCGCGTGCGATGTCCGCAGGGGGCGGCAGGGACGGGGGCGAGG
AATCCCGAGATTAACGGCGTCAGGTTTGACAAGCGGAGGAGATGAGTCTC
TCTTTGGCTGTTCGTGGGCTGCGATTCTCTCGGCCTTGGAGCAAGGGACG
CCCCCCCAGCCTTCATCTTGGTCGTCCGACGTGGGGGACTCCGAAGAGTG
CGTGCTGCGCGTGCGATGTCCGCAGGGGGCGGCAGGGACGGGGGCGAGGA
ATCCCGAGATTAACGGCGTCAGGTTTGACAAGACGACCAAGAGAGTCCTC
TGCGCGGCCGGAGACGGGAACGCCTACGAGTGGGACCTACAATCCCTCGG
AGCAGCCGCGGCAGGAAGTGACAAGGACAATACCTCGCTGGTCCGCACAT
ACGAAGGCGGCAAGGGGTATCTTCACGCCGTGGTGACGACCAAGAGAGTC
CTCTGCGCGGCCGGAGACGGGAACGCCTACGAGTGGGACCTACAATCCCT
CGGAGCAGCCGCGGCAGGAAGTGACAAGGACAATACCTCGCTGGTCCGCA
CATACGAAGGCGGCAAGGGGTATCTTCACGCCGTGGTGAGCACTCCCGGT
TCGTCTGTGGTGGCCACCGGATCCGACGACGGATACGTGGGGGTGTGGGA
CAGTAGGGTAAAAAACGCTGCAGCGGGAGCGAACATTGCGCTCCTGAGAC
CAGCACATGCGCAGGCAGGGGATGGAAAGGAAGCGTCCCCGGGTGCGCGG
GACAGCAAGCCCGACAACGCCGCGTGTGTCACGAGCCTCGAGAGCACTCC
CGGTTCGTCTGTGGTGGCCACCGGATCCGACGACGGATACGTGGGGGTGT
GGGACAGTAGGGTAAAAAACGCTGCAGCGGGAGCGAACATTGCGCTCCTG
AGACCAGCACATGCGCAGGCAGGGGATGGAAAGGAAGCGTCCCCGGGTGC
GCGGGACAGCAAGCCCGACAACGCCGCGTGTGTCACGAGCCTCGAGATGG
GCGATGGCGGCGACACGATCGTGTGCGGGGGGCGGCGGACGGGGGGGGCT
GTGATCGCAGGAGGAATTCTAGAGCCCACGGTAGGGCGGGGTTGGGTGAA
CCAATGGAACCTGGCCGATCTCAAGGCCACCGAGGTCGCTTCACTTCCCG
CTGAGATGGGCGATGGCGGCGACACGATCGTGTGCGGGGGGCGGCGGACG
GGGGGGGCTGTGATCGCAGGAGGAATTCTAGAGCCCACGGTAGGGCGGGG
TTGGGTGAACCAATGGAACCTGGCCGATCTCAAGGCCACCGAGGTCGCTT
CACTTCCCGCTGAGGTGCAGTGCATGCACTTGACGGAGCAGCGCCAGACT
CTCCTCGTGGCGGGAGCAGAGTCGACGCTCACCTCCCTCGGCCGGAGCCA
GCTCGAGAGGAAAGCTCGTACGCCGGTGACCCCCCGCTCGGTCTACGCGC
TGGCCGCCAACGGCACGGGTCCCCACGAGGGGGTGCAGTGCATGCACTTG
ACGGAGCAGCGCCAGACTCTCCTCGTGGCGGGAGCAGAGTCGACGCTCAC
CTCCCTCGGCCGGAGCCAGCTCGAGAGGAAAGCTCGTACGCCGGTGACCC
CCCGCTCGGTCTACGCGCTGGCCGCCAACGGCACGGGTCCCCACGAGGGG
CTGACCTGTGTCGCGGGCGTGGGGCCTGCGGTGGAAGTGTACACAATGCC
GGGGGTGTCGTCGAAGACCCTGTGCTTCGCGTGACTGACCTGTGTCGCGG
GCGTGGGGCCTGCGGTGGAAGTGTACACAATGCCGGGGGTGTCGTCGAAG
ACCCTGTGCTTCGCGTGA
back to top