mRNA_L-elsbetiae_contig1683.4589.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1683.4589.1
Unique NamemRNA_L-elsbetiae_contig1683.4589.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1683.4589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1683contigL-elsbetiae_contig1683:12567..13455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.9402404-CDS-L-elsbetiae_contig1683:12568..126861622815698.9402404-CDS-L-elsbetiae_contig1683:12568..12686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 12569..12686 -
1691683045.4658227-CDS-L-elsbetiae_contig1683:12568..126861691683045.4658227-CDS-L-elsbetiae_contig1683:12568..12686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 12569..12686 -
1622815698.9520426-CDS-L-elsbetiae_contig1683:13303..134551622815698.9520426-CDS-L-elsbetiae_contig1683:13303..13455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 13304..13455 -
1691683045.4757385-CDS-L-elsbetiae_contig1683:13303..134551691683045.4757385-CDS-L-elsbetiae_contig1683:13303..13455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1683 13304..13455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1683.4589.1prot_L-elsbetiae_contig1683.4589.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1683 12569..13455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1683.4589.1

>prot_L-elsbetiae_contig1683.4589.1 ID=prot_L-elsbetiae_contig1683.4589.1|Name=mRNA_L-elsbetiae_contig1683.4589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
QHRHQHRHSRSNAVRQRREIQWPLAMLSITPNSTSMCFYYLYVPSLPASI
ILPYVNTERAPCHQHAAVITASSANGTDAARSESQRRSVK
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mRNA from alignment at L-elsbetiae_contig1683:12567..13455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1683.4589.1 ID=mRNA_L-elsbetiae_contig1683.4589.1|Name=mRNA_L-elsbetiae_contig1683.4589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=889bp|location=Sequence derived from alignment at L-elsbetiae_contig1683:12567..13455- (Laminarionema elsbetiae ELsaHSoW15)
CAGCATAGGCACCAGCATAGGCACAGCAGAAGCAATGCTGTTCGGCAGCG
GAGGGAAATCCAGTGGCCCCTGGCAATGCTTTCGATTACGCCAAATTCCA
CTTCTATGTGTTTCTACTATCTGTACGTCCCAAGCCTTCCTGCTTCAATC
ATGTGAGTTCCTCCCCGCTGCAGCACCCAAGAGTCAATTCCCGATTGTTT
CTGAACGGTTGTGCTGAATGGTTGTGCCATTAGGACTGCCGACCTCTGTA
AAAAGTTGTCATTTGGCCGCTGTGTTTTCAGAACTGCACAGATAAGAGAA
GCTCAAATTCTGTCTCTTGAGCCTAGATAATATGTGTGCGTCTTGTGTTC
AGTCTAGATATGACAGATACAATCATGAACGCTCAGACAGAGAATGCCGA
CATGGTGCACCGATCTGTAGCGGTGGGCATCGCTAGCAGTGCCATTTGCT
GCTTGCCTGCCTTCCTATGATAGTCGTGTTGCTTCAACGACTTCCCGAAT
GGCGTTTCAAGCAGTACATTCCTACACGCCGCCTGTCTACTGCTGTATGT
ACATAATTTAGTATCGAGACCTAGACTACATAGACTAGAGTCTAAGAGAC
AAAATCGGCAAAGTGTACAGGTAGTCACACTCGGCGTTCGTCCTTGCGGT
ACAGTAGTACGCTCTTGTCGGGCACAGAGAATGCCATTTCCGTGTTTTCC
GCTTCACAGACAAAAGTGGTTGAGTGAGCAGCCCCCGCCCCCATCCACCC
CCCCGCGCGGCCGATAAAGCCTTCCGTACGTCAACACGGAGCGCGCACCA
TGTCACCAGCACGCAGCGGTCATCACTGCGAGCAGCGCCAACGGCACCGA
CGCCGCCCGCAGCGAAAGCCAGCGGCGCAGCGTCAAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1683:12567..13455-

>mRNA_L-elsbetiae_contig1683.4589.1 ID=mRNA_L-elsbetiae_contig1683.4589.1|Name=mRNA_L-elsbetiae_contig1683.4589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig1683:12567..13455- (Laminarionema elsbetiae ELsaHSoW15)
CAGCATAGGCACCAGCATAGGCACAGCAGAAGCAATGCTGTTCGGCAGCG
GAGGGAAATCCAGTGGCCCCTGGCAATGCTTTCGATTACGCCAAATTCCA
CTTCTATGTGTTTCTACTATCTGTACGTCCCAAGCCTTCCTGCTTCAATC
ATCAGCATAGGCACCAGCATAGGCACAGCAGAAGCAATGCTGTTCGGCAG
CGGAGGGAAATCCAGTGGCCCCTGGCAATGCTTTCGATTACGCCAAATTC
CACTTCTATGTGTTTCTACTATCTGTACGTCCCAAGCCTTCCTGCTTCAA
TCATCCTTCCGTACGTCAACACGGAGCGCGCACCATGTCACCAGCACGCA
GCGGTCATCACTGCGAGCAGCGCCAACGGCACCGACGCCGCCCGCAGCGA
AAGCCAGCGGCGCAGCGTCAAGCCTTCCGTACGTCAACACGGAGCGCGCA
CCATGTCACCAGCACGCAGCGGTCATCACTGCGAGCAGCGCCAACGGCAC
CGACGCCGCCCGCAGCGAAAGCCAGCGGCGCAGCGTCAAG
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