mRNA_L-elsbetiae_contig16829.4586.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16829.4586.1
Unique NamemRNA_L-elsbetiae_contig16829.4586.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Match: D7FT14_ECTSI (Putative AAA family ATP ase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT14_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.040e-32
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    4 NRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFSGADLHSLITEAAMERVRGLGSVIRTIDVVDMPAMEIRHFTEARLNMRPSVGAD 309
             RFVKRLYVPLPD +GRRQL+N  L T   +SLTAED+E + E TEGFSGADLH+L TEAAM  VR LGS I ++ V D+P ME RHFTEAR +MRPSVGA+
Sbjct:  395 RRFVKRLYVPLPDKSGRRQLMNILLKTSV-SSLTAEDVETVVEGTEGFSGADLHALCTEAAMGPVRDLGSNICSVKVSDVPPMETRHFTEARQSMRPSVGAE 495
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BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Match: A0A6H5JMF7_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF7_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 4.110e-32
Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    4 NRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFSGADLHSLITEAAMERVRGLGSVIRTIDVVDMPAMEIRHFTEARLNMRPSVGAD 309
             RFVKRLYVPLPD  GRRQL+N  L T   +SLTAED+E + E TEGFSGADLH+L TEAAM  VR LGS I ++ V D+P ME RHFTEAR +MRPSVGA+
Sbjct:  665 RRFVKRLYVPLPDKTGRRQLMNILLKTSV-SSLTAEDVETVVEGTEGFSGADLHALCTEAAMGPVRDLGSNICSVKVSDVPPMETRHFTEARQSMRPSVGAE 765
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BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Match: A0A835YR71_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR71_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.450e-18
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    4 NRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFSGADLHSLITEAAMERVRGLGSVIRTIDVVDMPAMEIRHFTEARLNMRPSV 300
             RFVKR+++PLPD+AGR QL+   L     +S+   DI  + + T+GFSGAD+H+L  EAAM  +R L + IR I + D+P +  +HF  A  +MRPSV
Sbjct:  175 RRFVKRVHIPLPDSAGREQLLRRLLQKNA-HSIADADIANIVDKTKGFSGADIHTLCGEAAMGPLRELHADIRRIRINDVPPITAKHFAAALASMRPSV 272
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BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Match: B7G2N8_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2N8_PHATC)

HSP 1 Score: 84.7 bits (208), Expect = 1.680e-17
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    4 NRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFSGADLHSLITEAAMERVRGLGSVIRTIDVVDMPAMEIRHFTEARLNMRPSV 300
             RFVKRLY+PLP+ + R  LI   L     + LT  DI++LA+ T G+SGADL +L  +AAM  +R LG+    +DV D+P +  +HF +AR +M+PSV
Sbjct:  189 RRFVKRLYIPLPEESDRECLIRVLLGK-NSHGLTDADIKKLAKETAGYSGADLKALSADAAMGPIRQLGTKALEVDVNDVPPISYKHFRQARRSMKPSV 286
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BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Match: A0A7S0XLJ9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XLJ9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.040e-17
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    4 NRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFSGADLHSLITEAAMERVRGLGSVIRTIDVVDMPAMEIRHFTEARLNMRPSV 300
             RF+KRLY+PLP  A R+ L+   L T   + LT  DI+ LA  TEGFSGADL +L T+AAM  +R LG+    I V D+P +  +HF  +   MRPSV
Sbjct:  282 RRFIKRLYIPLPVEADRKVLLGVLLKTNK-HVLTESDIDTLARDTEGFSGADLKALSTDAAMGPIRQLGAKAMDIGVDDVPPISYKHFKRSLKGMRPSV 379
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BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Match: A0A4D9D5N7_9STRA (AAA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5N7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.510e-17
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:    4 NRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFSGADLHSLITEAAMERVR----GLGSVIRTIDVVDMPAMEIRHFTEARLNMRPSV 300
             RFVKRLY+PLP+   RR LI   L T  ++ LT ++IE++   + GFSG+D+H L TEAAM  +R    GL   I  + V D+P +  RHF EA   +RPSV
Sbjct:  582 RRFVKRLYIPLPEAEARRALIVLLLRT-NNHQLTPQEIEQVVTRSRGFSGSDVHQLCTEAAMGPIRDMTAGLAGDITALAVADVPPIHFRHFLEALSTLRPSV 683
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BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Match: A0A1D2NJ11_ORCCI (Fidgetin-like protein 1 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NJ11_ORCCI)

HSP 1 Score: 80.1 bits (196), Expect = 2.190e-16
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    4 NRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFSGADLHSLITEAAMERVRGLGSVIRTIDVVDMPAMEIRHFTEARLNMRPSVG 303
             R VKR+Y+PLPD  GR+QL+   L     + LT  D + +A+ T+G+SGAD++SL  EAA   +R +G +++T+D  ++  M+++ F  A   +R SVG
Sbjct:   77 RRLVKRIYIPLPDLEGRKQLVKNLLREYS-SKLTENDFDSIAKMTDGYSGADMNSLCKEAAYGPIRDVGHMLQTLDAKNVRPMQMKDFVVAHRQVRSSVG 175
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BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Match: A0A5E4QG07_9NEOP (AAA domain-containing protein n=1 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4QG07_9NEOP)

HSP 1 Score: 82.4 bits (202), Expect = 3.460e-16
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    4 NRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFSGADLHSLITEAAMERVRGLG-SVIRTIDVVDMPAMEIRHFTEARLNMRPSVGAD 309
             R VKRLY+PLPDT  R+Q+I   L T  DN ++ +D+EE+A  TEGFSGAD+ SL +EAAM  +R +  S I  ID   + A+ +  F  A   +RPSV  D
Sbjct:  435 RRLVKRLYIPLPDTLARKQIILNLLKT-EDNVMSCDDVEEVARLTEGFSGADMKSLCSEAAMGPIRSVPMSQIINIDRNKVRAVNVDDFRSALQRVRPSVSQD 536
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BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Match: UPI0006451CFF (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451CFF)

HSP 1 Score: 81.6 bits (200), Expect = 6.650e-16
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    4 NRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFSGADLHSLITEAAMERVRGLGSVIRTIDVVDMPAMEIRHFTEARLNMRPSV 300
             R VKRLY+PLP+   R QLI   L +   N +T +DI+ +AE TEG+SG+DL +L TEAAME +R +   I T  + D+P + ++ F EA   M+PSV
Sbjct:  611 RRLVKRLYIPLPEYIARYQLIQ-HLVSKEHNEMTEDDIQRVAEKTEGYSGSDLKALCTEAAMESIRSITD-IETTSLDDIPPITVKDFLEAVNKMKPSV 707
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BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Match: A0A1E7F3N5_9STRA (AAA-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3N5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.900e-16
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:    4 NRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFSGADLHSLITEAAMERVRGLGSVIRTIDVVDMPAMEIRHFTEARLNMRPSVGAD 309
             RF KRLY+PLP+   R+ L+   L +  ++ L   DI+ LA  T+GFSGADL SL T+AAM  +R LGS    I V D+P + ++HF ++    RPSV  +
Sbjct:  178 RRFTKRLYIPLPEEDDRKALLIKLLKS-NNHKLVDTDIDLLARETKGFSGADLKSLCTDAAMGPIRSLGSKALEISVNDVPPISLKHFKKSLKGTRPSVAPE 278
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16829.4586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT14_ECTSI1.040e-3267.65Putative AAA family ATP ase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JMF7_9PHAE4.110e-3267.65AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YR71_9STRA5.450e-1846.46P-loop containing nucleoside triphosphate hydrolas... [more]
B7G2N8_PHATC1.680e-1746.46Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S0XLJ9_9STRA4.040e-1748.48Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A4D9D5N7_9STRA5.510e-1746.60AAA domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A1D2NJ11_ORCCI2.190e-1640.00Fidgetin-like protein 1 n=1 Tax=Orchesella cincta ... [more]
A0A5E4QG07_9NEOP3.460e-1647.57AAA domain-containing protein n=1 Tax=Leptidea sin... [more]
UPI0006451CFF6.650e-1646.46hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A1E7F3N5_9STRA7.900e-1644.12AAA-domain-containing protein (Fragment) n=1 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16829contigL-elsbetiae_contig16829:54..919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue7.3e-28
Seed eggNOG ortholog2880.D7FT14
Preferred nameFIGNL1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000070,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000287,GO:0000819,GO:0001503,GO:0001649,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006163,GO:0006282,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007140,GO:0007276,GO:0008150,GO:0008152,GO:0008283,GO:0008568,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009611,GO:0009628,GO:0009966,GO:0009968,GO:0009987,GO:0010212,GO:0010569,GO:0010646,GO:0010648,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030154,GO:0031110,GO:0031114,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0033687,GO:0034641,GO:0042623,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046034,GO:0046483,GO:0046872,GO:0048232,GO:0048285,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051013,GO:0051052,GO:0051128,GO:0051171,GO:0051276,GO:0051321,GO:0051493,GO:0051704,GO:0051716,GO:0051726,GO:0055086,GO:0060255,GO:0060548,GO:0065007,GO:0070013,GO:0070507,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080135,GO:0098813,GO:0104004,GO:0140013,GO:0140014,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1901879,GO:1902531,GO:1902532,GO:1902903,GO:1903046,GO:1903047,GO:2000779,GO:2001020,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.Belongs to the AAA ATPase family
EggNOG OGsCOG0464@1,KOG0740@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.8879268-CDS-L-elsbetiae_contig16829:53..1951622815698.8879268-CDS-L-elsbetiae_contig16829:53..195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16829 54..195 +
1691683045.4452872-CDS-L-elsbetiae_contig16829:53..1951691683045.4452872-CDS-L-elsbetiae_contig16829:53..195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16829 54..195 +
1622815698.899729-CDS-L-elsbetiae_contig16829:752..9191622815698.899729-CDS-L-elsbetiae_contig16829:752..919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16829 753..919 +
1691683045.4572241-CDS-L-elsbetiae_contig16829:752..9191691683045.4572241-CDS-L-elsbetiae_contig16829:752..919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16829 753..919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16829.4586.1prot_L-elsbetiae_contig16829.4586.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16829 54..919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16829.4586.1

>prot_L-elsbetiae_contig16829.4586.1 ID=prot_L-elsbetiae_contig16829.4586.1|Name=mRNA_L-elsbetiae_contig16829.4586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MNRFVKRLYVPLPDTAGRRQLINTSLDTIPDNSLTAEDIEELAESTEGFS
GADLHSLITEAAMERVRGLGSVIRTIDVVDMPAMEIRHFTEARLNMRPSV
GAD
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mRNA from alignment at L-elsbetiae_contig16829:54..919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16829.4586.1 ID=mRNA_L-elsbetiae_contig16829.4586.1|Name=mRNA_L-elsbetiae_contig16829.4586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=866bp|location=Sequence derived from alignment at L-elsbetiae_contig16829:54..919+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACAGGTTCGTGAAACGCCTGTACGTGCCCCTGCCCGACACGGCCGG
GCGGCGCCAACTTATCAACACTAGTCTCGACACCATCCCCGACAACAGCC
TCACCGCCGAAGATATCGAGGAACTGGCGGAAAGCACCGAAGGCGAGTTT
TATTTGCTGCATCTCGGATCGGTCGTTGGTCGTTGGTTTTCTTTCTCCGG
TCCTCCGCCCCTTTGTATTTCGGCTCGACCGCTCGCCGCTGTTTGCACGG
TATTACTGTATAACACGTGTAGGGCCGGAACTGGGTGATACCCGTCTGGC
CGATTCCAGTTTTTCCGGCTTGGCGTGTAAACAGGGCATACACACGCCCG
ACGAGCGCATTGGGTTAGGATTGTTCAGCCGGGGGGGTGCTTCCGAGGCG
CTGCCTCTTGGCCTGACCGCAGCAATAGCCATCTCGTCCAGATGAAATAT
CTAGCGTATATACGTAGGGCGCCTAGGCAGTCTCTACCAGTGTGGCCCCA
AAACCCTCCGTAAATACTCCTTCTATTCGGCGGGCGCCCGAAAGTAGACG
AACTTTGCCCGCTTTGCCCGCTTTGTCGGCGTTGGATGTAGACATGGTCT
AGCGGCAATGCGTGATACCGGTACGCGCTGCAACACCGTGTTTCAAACGG
GGTCGGCTTTTTTGGTAATCGTTGTTTTGTTGGCAATAATACGTTTCAGG
CTTTTCGGGAGCAGACCTCCACTCCCTCATCACGGAGGCCGCTATGGAGC
GAGTTCGAGGTCTGGGCAGCGTTATCCGCACCATCGACGTGGTAGACATG
CCTGCCATGGAAATCCGCCACTTCACCGAGGCTCGGCTGAACATGAGACC
CAGCGTTGGGGCGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16829:54..919+

>mRNA_L-elsbetiae_contig16829.4586.1 ID=mRNA_L-elsbetiae_contig16829.4586.1|Name=mRNA_L-elsbetiae_contig16829.4586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig16829:54..919+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACAGGTTCGTGAAACGCCTGTACGTGCCCCTGCCCGACACGGCCGG
GCGGCGCCAACTTATCAACACTAGTCTCGACACCATCCCCGACAACAGCC
TCACCGCCGAAGATATCGAGGAACTGGCGGAAAGCACCGAAGATGAACAG
GTTCGTGAAACGCCTGTACGTGCCCCTGCCCGACACGGCCGGGCGGCGCC
AACTTATCAACACTAGTCTCGACACCATCCCCGACAACAGCCTCACCGCC
GAAGATATCGAGGAACTGGCGGAAAGCACCGAAGGCTTTTCGGGAGCAGA
CCTCCACTCCCTCATCACGGAGGCCGCTATGGAGCGAGTTCGAGGTCTGG
GCAGCGTTATCCGCACCATCGACGTGGTAGACATGCCTGCCATGGAAATC
CGCCACTTCACCGAGGCTCGGCTGAACATGAGACCCAGCGTTGGGGCGGA
CGCTTTTCGGGAGCAGACCTCCACTCCCTCATCACGGAGGCCGCTATGGA
GCGAGTTCGAGGTCTGGGCAGCGTTATCCGCACCATCGACGTGGTAGACA
TGCCTGCCATGGAAATCCGCCACTTCACCGAGGCTCGGCTGAACATGAGA
CCCAGCGTTGGGGCGGAC
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