mRNA_L-elsbetiae_contig16819.4580.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16819.4580.1
Unique NamemRNA_L-elsbetiae_contig16819.4580.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16819.4580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16819contigL-elsbetiae_contig16819:461..991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size533
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.2285452-UTR-L-elsbetiae_contig16819:460..6641622815698.2285452-UTR-L-elsbetiae_contig16819:460..664Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16819 461..664 +
1691683044.9993343-UTR-L-elsbetiae_contig16819:460..6641691683044.9993343-UTR-L-elsbetiae_contig16819:460..664Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16819 461..664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.2398388-CDS-L-elsbetiae_contig16819:664..9911622815698.2398388-CDS-L-elsbetiae_contig16819:664..991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16819 665..991 +
1691683045.0079267-CDS-L-elsbetiae_contig16819:664..9911691683045.0079267-CDS-L-elsbetiae_contig16819:664..991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16819 665..991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16819.4580.1prot_L-elsbetiae_contig16819.4580.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16819 665..991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16819.4580.1

>prot_L-elsbetiae_contig16819.4580.1 ID=prot_L-elsbetiae_contig16819.4580.1|Name=mRNA_L-elsbetiae_contig16819.4580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MLSVRVLFFVNLRDSVLRFVSFRLVWFGSVSFRFPFFLCVVHVCKFVLYV
QHGGGLICCVPLGPPGDEQRQRSRDKFTCVVPVHVPPAVCSSEDERFFGI
DRSPFCPKI
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mRNA from alignment at L-elsbetiae_contig16819:461..991+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16819.4580.1 ID=mRNA_L-elsbetiae_contig16819.4580.1|Name=mRNA_L-elsbetiae_contig16819.4580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=531bp|location=Sequence derived from alignment at L-elsbetiae_contig16819:461..991+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCTGGTGCGCGACTACGATATTCACAGCAGTCCATAGAGTGACGTCGT
CATAGAGTAACACCGTGTTTGTGTTTTTGTTTTGTCGGACGGCGCCGAGG
GGCGGAGGCCGGCACGTGTCGTGTGTCCTTGGTGTGTCATACCGGGGATT
TCGTGAATCGCGCACAAGTAAAATTGTACGATACATTCATTAAATTTCCG
GGAAATGTTGTCGGTGCGTGTTTTATTCTTTGTCAATCTCCGTGATTCGG
TTCTGCGTTTCGTTTCGTTCCGTTTGGTTTGGTTTGGTTCCGTTTCGTTT
CGTTTCCCGTTTTTTTTGTGTGTGGTGCATGTATGTAAATTTGTTTTGTA
TGTACAACATGGTGGAGGGTTGATTTGTTGTGTCCCGCTCGGTCCTCCAG
GAGACGAACAGCGGCAGCGCAGCAGGGACAAGTTTACATGTGTTGTTCCT
GTCCACGTTCCGCCTGCTGTCTGTTCGAGTGAAGATGAGCGTTTTTTCGG
GATCGATCGATCACCCTTTTGCCCCAAGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16819:461..991+

>mRNA_L-elsbetiae_contig16819.4580.1 ID=mRNA_L-elsbetiae_contig16819.4580.1|Name=mRNA_L-elsbetiae_contig16819.4580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig16819:461..991+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGTCGGTGCGTGTTTTATTCTTTGTCAATCTCCGTGATTCGGTTCT
GCGTTTCGTTTCGTTCCGTTTGGTTTGGTTTGGTTCCGTTTCGTTTCGTT
TCCCGTTTTTTTTGTGTGTGGTGCATGTATGTAAATTTGTTTTGTATGTA
CAACATGGTGGAGGGTTGATTTGTTGTGTCCCGCTCGGTCCTCCAGGAGA
CGAACAGCGGCAGCGCAGCAGGGACAAGTTTACATGTGTTGTTCCTGTCC
ACGTTCCGCCTGCTGTCTGTTCGAGTGAAGATGAGCGTTTTTTCGGGATC
GATCGATCACCCTTTTGCCCCAAGATCATGTTGTCGGTGCGTGTTTTATT
CTTTGTCAATCTCCGTGATTCGGTTCTGCGTTTCGTTTCGTTCCGTTTGG
TTTGGTTTGGTTCCGTTTCGTTTCGTTTCCCGTTTTTTTTGTGTGTGGTG
CATGTATGTAAATTTGTTTTGTATGTACAACATGGTGGAGGGTTGATTTG
TTGTGTCCCGCTCGGTCCTCCAGGAGACGAACAGCGGCAGCGCAGCAGGG
ACAAGTTTACATGTGTTGTTCCTGTCCACGTTCCGCCTGCTGTCTGTTCG
AGTGAAGATGAGCGTTTTTTCGGGATCGATCGATCACCCTTTTGCCCCAA
GATC
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