mRNA_L-elsbetiae_contig16811.4578.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16811.4578.1
Unique NamemRNA_L-elsbetiae_contig16811.4578.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16811.4578.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 9.770e-25
Identity = 75/136 (55.15%), Postives = 93/136 (68.38%), Query Frame = 1 
Query:   22 GRFGYVTLADGAQKKVNILALIDEEA--ESGVLEWGATYARGGNDGS-----LNDEDSSSSSEEDASAPVMVTSQARSMSHTFWGAEQAKDHEEGETTLASTEMQESMCRLETENASLRALVDSMQMDLQMANARI 408
            G  G  T+ DG+Q        +D +   E G   +G +  RGG DG+     L+D+D S SS+E +SAPV+VTS ARSMS TFWGAEQ KDH+   +  ASTEMQE++ R+E ENASLRALVDSMQMDLQMANAR+
Sbjct:  967 GNDGASTILDGSQFATLAGDAVDVDTLLEQGAHGYGGSD-RGGEDGNGEDCGLDDDDGSFSSDE-SSAPVVVTSHARSMSSTFWGAEQEKDHQRRGSLQASTEMQENLNRVEAENASLRALVDSMQMDLQMANARL 1100
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BLAST of mRNA_L-elsbetiae_contig16811.4578.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.790e-17
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:  226 ARSMSHTFWGAEQAKDHEEGETTLASTEMQESMCRLETENASLRALVDSMQMDLQMANARI 408
            ARSMS TFWGAEQ KDH+   ++ ASTEMQES+ R+E ENASLRALVDSMQMDLQMANAR+
Sbjct:  905 ARSMSSTFWGAEQEKDHQRRGSSQASTEMQESLSRMEAENASLRALVDSMQMDLQMANARL 965
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16811.4578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0T6_9PHAE9.770e-2555.15Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR41_ECTSI2.790e-1777.05Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16811contigL-elsbetiae_contig16811:1787..3453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size639
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16811.4578.1prot_L-elsbetiae_contig16811.4578.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16811 1991..2574 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.0969987-UTR-L-elsbetiae_contig16811:1786..19901622815698.0969987-UTR-L-elsbetiae_contig16811:1786..1990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16811 1787..1990 -
1691683044.933446-UTR-L-elsbetiae_contig16811:1786..19901691683044.933446-UTR-L-elsbetiae_contig16811:1786..1990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16811 1787..1990 -
1622815698.1322572-UTR-L-elsbetiae_contig16811:2574..25771622815698.1322572-UTR-L-elsbetiae_contig16811:2574..2577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16811 2575..2577 -
1691683044.9645777-UTR-L-elsbetiae_contig16811:2574..25771691683044.9645777-UTR-L-elsbetiae_contig16811:2574..2577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16811 2575..2577 -
1622815698.1430724-UTR-L-elsbetiae_contig16811:3246..34531622815698.1430724-UTR-L-elsbetiae_contig16811:3246..3453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16811 3247..3453 -
1691683044.9722729-UTR-L-elsbetiae_contig16811:3246..34531691683044.9722729-UTR-L-elsbetiae_contig16811:3246..3453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16811 3247..3453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.1082652-CDS-L-elsbetiae_contig16811:1990..20751622815698.1082652-CDS-L-elsbetiae_contig16811:1990..2075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16811 1991..2075 -
1691683044.9448206-CDS-L-elsbetiae_contig16811:1990..20751691683044.9448206-CDS-L-elsbetiae_contig16811:1990..2075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16811 1991..2075 -
1622815698.118218-CDS-L-elsbetiae_contig16811:2434..25741622815698.118218-CDS-L-elsbetiae_contig16811:2434..2574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16811 2435..2574 -
1691683044.9547842-CDS-L-elsbetiae_contig16811:2434..25741691683044.9547842-CDS-L-elsbetiae_contig16811:2434..2574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16811 2435..2574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16811.4578.1

>prot_L-elsbetiae_contig16811.4578.1 ID=prot_L-elsbetiae_contig16811.4578.1|Name=mRNA_L-elsbetiae_contig16811.4578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
MVTSQARSMSHTFWGAEQAKDHEEGETTLASTEMQESMCRLETENASLRA
LVDSMQMDLQMANARILRRAAKAF*
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mRNA from alignment at L-elsbetiae_contig16811:1787..3453-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16811.4578.1 ID=mRNA_L-elsbetiae_contig16811.4578.1|Name=mRNA_L-elsbetiae_contig16811.4578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1667bp|location=Sequence derived from alignment at L-elsbetiae_contig16811:1787..3453- (Laminarionema elsbetiae ELsaHSoW15)
GCCAGCGGTACGCCGTACGGCGGTAGGTTCGGGTACGTGACGCTGGCCGA
CGGCGCTCAGAAGAAAGTCAACATCCTGGCCTTGATCGACGAGGAAGCCG
AGAGCGGCGTGCTCGAGTGGGGTGCCACCTATGCTCGGGGCGGTAACGAT
GGTTCTCTCAACGACGAAGACTCTTCGTCCTCCTCGGAAGAAGACGCCAG
TGCTCCTGTGAGTGCATTGTTAATGGCATAAAGCGTTGTTCGTCTGGAAC
GGGCATGATGAGTCTACGCTCAATTAGCCTTGTTCGACTCAAGAGTGGAT
GGATGTGGAAGGGCGCGTTTTTTGCCCTCCACGACGGACGTGACATTAAC
TCGTCTGCAGGCAGGCCTAGAGCGTAGATAGATAGATTAGAGTAATGCCA
ACTTATAGGGCAGCTGAGTATGTAGCAAAACCACGTTCGCAAAGGCCCCC
GGTATTGGTTGGTAGTATTTCTCATCTACTGGGTGCTGCTGCCTGCCTGC
CTGCCTGCCTGCCTTCACAAGCTTGTTTGTTTTTGGGGGTTGTTGCCACA
CGTGCTAGCTTGTTGCCGACGGTGTCGCATCACATCGACCTAATCAGCTT
TCCAGTCTCTCAATATAAAAAATCCCTAGTTGCCGTTCGTTTGTTTTATG
TGTTTGTTGCTCCTGCATATGTATGACGTCATACCGCAAATAAATAAATA
GGCCGCGTTTGCGTTCTCACATCTGGCAGAGGCTACTCCAGCGTTTCGCG
GAGCGGGCCATAATTCCTTGGCCGCCAGAGTGGGACAACGCCTTCTTCGC
TAATGTTTTGCCGTCCGTTTTCTGTGCTGGGCCTACCCCGTTGCGGTGCC
GCCCGTTTCTTTTTCAATACCTGCAGGTAATGGTCACCTCCCAAGCGCGT
TCGATGTCGCACACATTCTGGGGAGCCGAGCAGGCCAAGGATCACGAAGA
GGGCGAAACCACGCTGGCGTCCACGGAGATGCAAGAGAGCATGTGCCGCC
TTGAAACGGAAAACGCCAGGTGATCAGTAAAACTAAAAGCTCTATTGTAC
CAACAGATGCGAACTACGTGTGTATGTACAAACAACAACCTCGGTTTTTG
TTTCAACATACGCCGGGGAAGAGACACGCGAGAGGGTTGGGGTCCCGTGA
GTGAGCGTATGCAAATATTTGATCGAAATAGCAGCACAGAGTCACGCAAG
GCTCCGCCTCGTTTTGGTAGCTTATTTCCTCTTTCTGTGAAAAGCTGGTC
CACGCTTTTGCGGCATGCTTGTTGGTGATGGATGCCCCAACCGCTATTGT
TGGTCGATCTCGGTGTTGTGTACATACGTTGTGTGTAACTGCTGTCGTCC
ACGGCTGCGCTTGTGTGTACGCTGGCAGCCTTCGCGCTCTGGTGGACAGC
ATGCAGATGGACCTCCAAATGGCGAACGCCAGAATCTTGCGACGAGCTGC
AAAAGCCTTCTAAGGACCGCAGTCTTTCCCCAGCACGGGTAAGAGAAAAG
AGAAAGGCTGAGACAGTGGAGTGGTCGCCGCCGCAGGTACCTTGATCTCT
GTGGGGTTGCATCATCTATCGTTTAAATAGCTATGTCTTTGCTGTATCGT
GACTGGGAGCACCGACCCTCATATACCTCATACATTCAACGGGACGCACT
CGTTTCGCGGACCACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16811:1787..3453-

>mRNA_L-elsbetiae_contig16811.4578.1 ID=mRNA_L-elsbetiae_contig16811.4578.1|Name=mRNA_L-elsbetiae_contig16811.4578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig16811:1787..3453- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCACCTCCCAAGCGCGTTCGATGTCGCACACATTCTGGGGAGCCGA
GCAGGCCAAGGATCACGAAGAGGGCGAAACCACGCTGGCGTCCACGGAGA
TGCAAGAGAGCATGTGCCGCCTTGAAACGGAAAACGCCAGATGGTCACCT
CCCAAGCGCGTTCGATGTCGCACACATTCTGGGGAGCCGAGCAGGCCAAG
GATCACGAAGAGGGCGAAACCACGCTGGCGTCCACGGAGATGCAAGAGAG
CATGTGCCGCCTTGAAACGGAAAACGCCAGCCTTCGCGCTCTGGTGGACA
GCATGCAGATGGACCTCCAAATGGCGAACGCCAGAATCTTGCGACGAGCT
GCAAAAGCCTTCTAACCTTCGCGCTCTGGTGGACAGCATGCAGATGGACC
TCCAAATGGCGAACGCCAGAATCTTGCGACGAGCTGCAAAAGCCTTCTAA
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