mRNA_L-elsbetiae_contig16810.4576.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16810.4576.1
Unique NamemRNA_L-elsbetiae_contig16810.4576.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16810.4576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16810contigL-elsbetiae_contig16810:1128..3617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size297
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16810.4576.1prot_L-elsbetiae_contig16810.4576.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16810 1187..3617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.964417-UTR-L-elsbetiae_contig16810:1127..11861622815697.964417-UTR-L-elsbetiae_contig16810:1127..1186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16810 1128..1186 +
1691683044.868355-UTR-L-elsbetiae_contig16810:1127..11861691683044.868355-UTR-L-elsbetiae_contig16810:1127..1186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16810 1128..1186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.9747071-CDS-L-elsbetiae_contig16810:1186..12961622815697.9747071-CDS-L-elsbetiae_contig16810:1186..1296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16810 1187..1296 +
1691683044.8810184-CDS-L-elsbetiae_contig16810:1186..12961691683044.8810184-CDS-L-elsbetiae_contig16810:1186..1296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16810 1187..1296 +
1622815697.9881134-CDS-L-elsbetiae_contig16810:3268..33271622815697.9881134-CDS-L-elsbetiae_contig16810:3268..3327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16810 3269..3327 +
1691683044.8903508-CDS-L-elsbetiae_contig16810:3268..33271691683044.8903508-CDS-L-elsbetiae_contig16810:3268..3327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16810 3269..3327 +
1622815697.999073-CDS-L-elsbetiae_contig16810:3549..36171622815697.999073-CDS-L-elsbetiae_contig16810:3549..3617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16810 3550..3617 +
1691683044.9006968-CDS-L-elsbetiae_contig16810:3549..36171691683044.9006968-CDS-L-elsbetiae_contig16810:3549..3617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16810 3550..3617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16810.4576.1

>prot_L-elsbetiae_contig16810.4576.1 ID=prot_L-elsbetiae_contig16810.4576.1|Name=mRNA_L-elsbetiae_contig16810.4576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
MRLGLGNPAGTAALLLLVLSPSPVVSLAREEREDTHRVVRKPFGRPQPAS
GDRREHAAGEGGARVEHERAEATTVAVPI
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mRNA from alignment at L-elsbetiae_contig16810:1128..3617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16810.4576.1 ID=mRNA_L-elsbetiae_contig16810.4576.1|Name=mRNA_L-elsbetiae_contig16810.4576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2490bp|location=Sequence derived from alignment at L-elsbetiae_contig16810:1128..3617+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAAAGAGTTTTCTGAAAGATACAAGGGCGAGGGTCGAGGTGTTCGACT
GCTACTGCCATGAGACTGGGGTTGGGAAACCCGGCGGGGACGGCTGCTCT
TCTCCTGCTGGTGCTGTCACCCAGCCCCGTGGTTAGTCTCGCGCGGGAGG
AGCGAGAGGATACCCACAGGTGAAAACGGGTTCATCATCTGCTCTTTGCA
CCTATAGCTGAATTAACTCCCTTTGTAGCACATATAATCGCACAAGTTTT
TCGGCGGCTTACGCCGTCACGCTAACTACCGCGAGAGCCAAGATGCATGA
GAGTGGTGTGTTGACACGCGTGAGATGCAAAAGGGTTCGATGTGGATTGA
CGTGACGCGAATGCATGGGTGCGTACCTTGAACGCCGTTGTCTAGAGAAT
TTAAGGCAAACACCGAGAGTTGCTGCTCAGAGAGGGGGGTAAACCGTAAA
AAACGCCAACCAACCCTCAAACGCCATAAGTCTACATTGTCTTATTAATA
TGTCTGTTCCATATCTATATCAAAATGAATCGGCCGACAGGAACAGAAAA
CACGCGTGCGCGTTGACCTAGAGAACATCTCACAAACAGCTCAAACAGGG
AAGAAAAAACGCCCACGAAAGAGAGAGGGTTTTGGCGGCCTACGCCGCCA
CATGAGGCCGCTAAAAGCGGAGTCCCAGCATGAATCTTTTGGCGACCCAA
AATGGCGAAAAACATGAAGCACTTGAGCACACACTAACACACGAAGAGTT
TCTTCTCGTCACTCCGGGGCAACGTACACAAAAAAAAACGGTGATGATGT
AATGCCGCCAAGCCGCACAAAACAACGAACCTGTCATGTATATATATGCC
ATGTAATTCGAACGGAGCTGCGAAAAAGCACCGCATTCCTAGGCATTTAC
CCGTCATCTGGAAGCCGAAAGCTTCCGCATATAAATGCGGATCTATATAA
CAGCCACCATGCGTGCGTGCGTGAAAAATGTTTATACTTGAAAGAAAACA
CCAACATAACAACTCCGGGCAACGTGCACAACGAATTAACCGCTCATCAT
GTATCTACCATGGGCACACATTGAACGGTTGAACGGAGCAAGCTGCTGAA
AAAGAACCGCACCCCTCCCAATTAACCGTAACTCCACCCGGGCAAATGGA
ACAGAGAACAGAGGAGAGAAGGCAACCTACACACACACGGAGACGTAAAG
AACGATGGGCTGGGAGTGAAGTAAACTGCTCAAAGAAAAGAAGGCGACAC
GACACACACAGAGACGTAGAGAGCATACGACGAGCTGGGAGTGAAGTAAA
CTGCCGACAAATGAAACTCGCATCATAACTCACGCAACAACCCGAGCTCG
CCTCTTAGAACTGATGATAGAGCCAGCGAGACGTATGTCACCCCAGCGAA
AGGGATAAAAAGAGAGATACGTACATAAAGACAAAGAGCGATATAGAGAG
CAATTGTCTCGAGGTGGAGGGCACCGTAGAGCAACCCTGATCGATCGAAA
CGACCTCCCTAGAACCGGGAAATGACCGCATGTTTATAAACGCACGCGTA
TACATGGACACGCGTCCGGCGCGTCCGGACCATCTGCAGCCACACGAGAA
GAGGCGGAATGCGTCGCCCAGCGACATGCGGCCGGAAAAGAGAAAATAGA
GAGACAGAAAGAGAGAGGTACAGAGGGCAATGGGCTCGAAGTAGAGAGCA
CCATGGAGCAACCCCGACCGATCGAAACGCTCTCCCGTTGAAAAAATAAC
GAAAAACCAACGCTCACGTGTACTGGCACGTCAGGCATCGAGAGCTTTCA
GACCCCAGAATCTCCAGTCTGAATTGAAGTGAAAAAGTGGCATGGCCTGA
CAAAGCGCGTGCGAGAGCACGGAGAATTTTCTTGGAATAGCGAACGGAGA
GACAAAAGATAATGCGTATAACTGTTATATAAGGTGCGGCAACGTCGACA
ACGAATGACATTCGTGACGGAGAGAGGCGCAGCTTAGCTGTCCCTTTTTC
TGCTATGCTTCCCCGCTTTGAGCAGACACACCGTCAGACCATGGTATGTA
GCTCACGAAGTGCTAAACTATCATTTCTGAACCGCACAACCACGGTAGAC
GGACGTCCTGACCCGCACAATCACCCCTTTCCGATGCCCAGGGTTGTTCG
CAAACCGTTTGGACGACCGCAACCGGCATCGGGTGATCGACGCGAACACG
GTGAGCACGTAGTAGTGAAGCATGTGCCACAACAGGGCAAATGGAGCTAC
TATTCAGCGGGTGAAGACACATTTGTCATCGGGAGAAACGAACGCTCCCC
CAGAACCATGTTGTTTGGATGAGGCCCCACTGCTGCTGCTGCACACTCGT
CAGAAATTTTCACGGCGTACCTTGATTCCCCCCCCCCCGCCCTGTATGGG
CGTGTGCTTGGTATTTCGGCAGCTGCCGGCGAGGGTGGCGCTAGAGTGGA
GCACGAGAGAGCAGAGGCAACAACAGTAGCAGTGCCGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16810:1128..3617+

>mRNA_L-elsbetiae_contig16810.4576.1 ID=mRNA_L-elsbetiae_contig16810.4576.1|Name=mRNA_L-elsbetiae_contig16810.4576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig16810:1128..3617+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGACTGGGGTTGGGAAACCCGGCGGGGACGGCTGCTCTTCTCCTGCT
GGTGCTGTCACCCAGCCCCGTGGTTAGTCTCGCGCGGGAGGAGCGAGAGG
ATACCCACAGATGAGACTGGGGTTGGGAAACCCGGCGGGGACGGCTGCTC
TTCTCCTGCTGGTGCTGTCACCCAGCCCCGTGGTTAGTCTCGCGCGGGAG
GAGCGAGAGGATACCCACAGGGTTGTTCGCAAACCGTTTGGACGACCGCA
ACCGGCATCGGGTGATCGACGCGAACACGGGTTGTTCGCAAACCGTTTGG
ACGACCGCAACCGGCATCGGGTGATCGACGCGAACACGCTGCCGGCGAGG
GTGGCGCTAGAGTGGAGCACGAGAGAGCAGAGGCAACAACAGTAGCAGTG
CCGATCCTGCCGGCGAGGGTGGCGCTAGAGTGGAGCACGAGAGAGCAGAG
GCAACAACAGTAGCAGTGCCGATC
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