mRNA_L-elsbetiae_contig1681.4575.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Match: D8LPX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX9_ECTSI) HSP 1 Score: 340 bits (872), Expect = 6.490e-106 Identity = 173/342 (50.58%), Postives = 228/342 (66.67%), Query Frame = 2 Query: 326 RGQEEQEDDLLITQETLKRLQVVVVLQDEGIVYCPIPKVASSEWKRAFRWMVGIEEWEGTRTNLHKLVTNGLERLTDRGLEETRFAFESDRYFKFVVVRDPAERLVSGFLNKCVKEGYEAGGMAAKGSQNCPYLTIMPELFLGAEKATLATHARFKALMEADPEDTFFHFASGLNRQIKDHGGDSCKIGNVHYRPQSCFCDLMNLLPAYHVMPFANLSAEAEALAGRLPAALP--------DSGV------HVEIEGAEGVAASGRGTGVTEERREEIHQFLIERFTEYHKVDPKGATDAVDKKTQFLSERVLELIHTMFAQDYKLFAEYL*SGRPVLTTCT 1309 RG + ++ +++T E L +++ VV+L+ EGI+YCPI KVAS+EWKR+ RWMVGIE+W G TNLH NGLERL + GLE +A ESDRYF+FVVVRDPAERLVS FLNKCV +GY G + +G+ NC YL++MP LF A +ATL TH + L+E +PEDTF+HFASG+ ++K G D+CK+ N H++PQ CFCDL +LPA+HV+PF N+SAEA A A R+P LP D G + +G G+A GRGTGV+ RR+EI FL ERF D K T A D+K FLS RVL ++H MF +DY++ +Y G + T + Sbjct: 41 RGGDAGKEKIVVTHENLPKMKNVVILRGEGIIYCPIAKVASAEWKRSLRWMVGIEDWMGNHTNLHSAGKNGLERLQEWGLEGITWALESDRYFRFVVVRDPAERLVSAFLNKCVTDGYMRGRLNRQGAPNCAYLSLMPTLFPNATEATLDTHQTLRDLVEREPEDTFYHFASGILAEMKREG-DACKVSNHHFQPQMCFCDLREILPAFHVIPFHNMSAEAAAFAARIPEPLPISPHKEATDGGTAGISKSSIGKDGPGGMAQGGRGTGVSGSRRQEIADFLTERFETARDKDVK-VTGAADRKNMFLSNRVLRVVHQMFKEDYEVLGQYFPPGEEEINTAS 380
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Match: D7G2B9_ECTSI (Similar to dermatan 4-sulfotransferase-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B9_ECTSI) HSP 1 Score: 188 bits (478), Expect = 1.050e-50 Identity = 103/288 (35.76%), Postives = 149/288 (51.74%), Query Frame = 2 Query: 410 EGIVYCPIPKVASSEWKRAFRWMVGIEEWEGTRTNLHKLVTNGLERLTDRGLEETRFAFESDRYFKFVVVRDPAERLVSGFLNKCVKEGYEAGGMAAKGSQNCPYLTIMPELFLGAEKATLATHARFKALMEADPEDTFFHFASGLNRQIKDHGGDSCKIGNVHYRPQSCFCDLMNLLPAYHVMPFANLSAEAEALAGRLPAALPDSGVHVEIEGAEGVAASGRGTGVTEERREEIHQFLIERFTEYHKVDPKGATDAVDKKTQFLSERVLELIHTMFAQDYKLFAEY 1273 +G++YCPI KVA +EW++ RWM+GI +W+ +H NG+ L R + D + KFVVVRDPA+RL+S FLNKC+ GG QNCPY MP+ F G K AT +F+A M +P F F G+ R ++ G CK+ N H+RPQ CFC + +YHV+PFAN+S EA L + PD R E + +F+++RF+ +GAT K+ ++ S+ L++I ++ +DY LF EY Sbjct: 10 DGMIYCPIAKVACAEWRKTLRWMLGIPDWD--TGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCL------GGEW----QNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLTG---CKV-NSHWRPQHCFCSIARFRESYHVVPFANMSTEAVNLVDHMRRPSPD-------------------------RAELLREFIVQRFSSNQDAKAQGATS---KRERYFSQEALDVIKMVYGKDYSLFGEY 253
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Match: A0A6H5JC58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC58_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.080e-38 Identity = 89/221 (40.27%), Postives = 120/221 (54.30%), Query Frame = 2 Query: 410 EGIVYCPIPKVASSEWKRAFRWMVGIEEWEGTRTNLHKLVTNGLERLTDRGLEETRFAFESDRYFKFVVVRDPAERLVSGFLNKCVKEGYEAGGMAAKGSQNCPYLTIMPELFLGAEKATLATHARFKALMEADPEDTFFHFASGLNRQIKDHGGDSCKIGNVHYRPQSCFCDLMNLLPAYHVMPFANLSAE---------AEALAGRLPAALPDSGVHVE 1045 +G++YCPI KVA +EW++ RWM+GI +W+ +H NG+ L R + D + KFVVVRDPA+RL+S FLNKC+ GG QNCPY MP+ F G K AT +F+A + +P F F G+ + ++ G CK+ N H+RPQ CFC + +YHV+PFAN+SA AEA G AA GVH E Sbjct: 175 DGMIYCPIAKVACAEWRKTLRWMLGIPDWD--TGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCL------GGEW----QNCPYTEFMPQRFPGVSKRDAATDTKFRAAINDEPRKVFRDFMLGVQKDVRLRG---CKV-NSHWRPQHCFCSIARFRESYHVVPFANMSANGGGEPGGSHAEAFPGPCGAA---EGVHSE 376
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Match: A0A6H5JKQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ4_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.310e-28 Identity = 94/315 (29.84%), Postives = 144/315 (45.71%), Query Frame = 2 Query: 356 LITQETLKRLQVVVVLQDEGIVYCPIPKVASSEWKRAFRWMVGIEEWEGTRTNLHKLVTNGLERLTDRGLEETRFAFESDRYFKFVVVRDPAERLVSGFLNKCVKEGYEAGGMAAKGSQNCPYLTIMPELFLGAEKATLATHAR---------FKALMEADPEDTFFHFASGLNRQIKDHGGDSCKIGNVHYRPQSCFCDLMNLLPAYHVMPFANLSAEAEALAGRLPAALPDSGVHVEIEGAEGVAASGRGTGVTEERREEIHQFLIERFTEYHKVDPKGATDAVDKKTQFLSERVLELIHTMFAQDYKLFAEY 1273 L+ E + + L+ E IVYCPI KVA +EW + FRW+ G E+W R H GL+ L + +E S + KF VVR+PA+RL+S FL KC + E NCPYL + P+LF E+ R ++A + F + + R++K D C N H+ PQ C C L P + ++ +AN++ A A A +P + ++S RG EI +FL++R H+ K T A + + + L+ +H +A+DYKLF++Y Sbjct: 95 LVELELPRHFDGALALKSERIVYCPIQKVACTEWIKVFRWIDGHEDWAEPRHQKH-----GLDVLEEMDVERGNQILNSPDWLKFAVVREPAQRLLSCFLQKCNRYNME------NEYSNCPYLELWPDLF-DRERFPDGVPTRPGVDTLAIVWEAFTSRGRDSMFAPYVEVITRRVKQ---DPCGQ-NKHWSPQYCHCSLDVTAPVFRIVGWANMTEAASA------AIVPFA------------SSSARGL--------EIKEFLVDRMDTNHERHGKK-TSAGSRSQEAYTAEALQAVHEAYAKDYKLFSQY 366
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Match: R7QL39_CHOCR (Carbohydrate sulfotransferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL39_CHOCR) HSP 1 Score: 73.9 bits (180), Expect = 1.310e-10 Identity = 59/207 (28.50%), Postives = 91/207 (43.96%), Query Frame = 2 Query: 392 VVVLQDEGIVYCPIPKVASSEWKRAFRWMVGIEEWEGTRTNLHKLVTNGLERLTDRGLEETRFAFESDRYFKFVVVRDPAERLVSGFLNKCVKEGYEAGGMAAKGSQNCPYLTIMPELFLGAEKATLATHARFKALMEADPEDTFFHFASGL-NRQIKDHGGDSCKIGNVHYRPQSCFCDLMNLLPAYHVMPFANLSAEAEALAGRL 1009 ++V + +V+CP+PK ASS WK R + ++ + H+ T+GL L D E YF+FV VR+P RL+S +++K E Y+ FL A K T AR +E DP TF HF + + ++D N H+ PQ+ +C + +LP V NL + + + RL Sbjct: 58 IIVSEVARLVFCPVPKAASSNWKYLIRRWERVPDFANL-SRAHRPATSGLRYLADYAPAEAEAILRDPTYFRFVFVREPYARLLSCYMDKFRNTDPE-------------YVRAEYRTFLAALKGW--TFAR-DVDVERDPRLTFAHFVQAVADMPVQDM--------NAHWMPQTAYCAI-GVLPYDFVGRMENLKQDVDYVFRRL 238
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Match: A0A5J4YVB4_PORPP (Carbohydrate sulfotransferase 14 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVB4_PORPP) HSP 1 Score: 72.8 bits (177), Expect = 1.280e-9 Identity = 56/200 (28.00%), Postives = 94/200 (47.00%), Query Frame = 2 Query: 392 VVVLQDEGIVYCPIPKVASSEWKRAFRWMVGIEEWEGTRTNLHKLVTNGLERLTDRGLEETRFAFESDRYFKFVVVRDPAERLVSGFLNKCVKEGYEAGGMAAKGSQNCPYLTIMPELFLGAEKATLATHARFKALMEADPEDTFFHFASGLNRQIKDHGGDSCKIGNVHYRPQSCFCDLMNLLPAYHVMPFANLSAEAE 991 ++V + ++YCP+PKVA+S +K R G E++ T H +GL L+ +EE + + KFV VR+P +R++S +LNK V K ++ Y T + +L+ T +K+ + + +F F + ++ Q S N H+ QS C L ++ P V F N+SA+AE Sbjct: 254 IIVSEKSRLIYCPVPKVANSNFKMLIRKFEGFEDYADLLT-AHSRARSGLRFLSSYSVEEVEALMKDPTFLKFVFVRNPLDRVLSCYLNKIVN----------KDPKSEEYATYLGQLY----GWRFLTQRDYKS----ERKPSFQEFVNAISLQ-------SPWQMNEHWALQSFLCSL-DVFPYDFVGRFENMSADAE 426
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Match: A0A5J4YK96_PORPP (Carbohydrate sulfotransferase 14 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YK96_PORPP) HSP 1 Score: 69.3 bits (168), Expect = 8.970e-9 Identity = 52/201 (25.87%), Postives = 89/201 (44.28%), Query Frame = 2 Query: 392 VVVLQDEGIVYCPIPKVASSEWKRAFRWMVGIEEWEGTRTNLHKLVTNGLERLTDRGLEETRFAFESDRYFKFVVVRDPAERLVSGFLNKCVKEGYEAGGMAAKGSQNCPYLTIMPELFLGAEKATLATHARFKALMEADPEDTFFHFASGLNRQIKDHGGDSCKIGNVHYRPQSCFCDLMNLLPAYHVMPFANLSAEAEA 994 ++V + V+CP+PKVA+S WK R + G ++ H++ NGL L+D ++ +FKF VRDP RLVS +L+K K + + Y M +++ + R + + + +P +F F L +Q N+H+ PQS C ++ P + F NL ++A + Sbjct: 135 IIVSELNRFVFCPVPKVANSNWKYVIRQLEGFSDYANLTLG-HRVDLNGLRYLSDYSPDDAERILFGSEFFKFAFVRDPYTRLVSAYLDK----------FQNKDASSEEYRLFMAQIYSWK-------YVRDRDIAK-EPRPSFRAFVDELLKQKPTRM-------NLHWMPQSYICGFGDV-PYDFIGRFENLVSDASS 308
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Match: A0A7S2ZYV0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZYV0_9RHOD) HSP 1 Score: 67.8 bits (164), Expect = 1.880e-8 Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 2 Query: 392 VVVLQDEGIVYCPIPKVASSEWKRAFRWMVGIEEWEGTRTNLHKLVTNGLERLTDRGLEETRFAFESDRYFKFVVVRDPAERLVSGFLNKCVKEGYEA 685 ++V + ++CP+PKVA+S WK R + G +++ H T+GL L+D EE + Y KFV VRDP RL+S +++K V + YE+ Sbjct: 85 IIVSEKHKFIFCPVPKVANSNWKYLIRKIEGAKDYMDLAL-AHDQHTSGLRYLSDYSPEEVEYLLYKSGYHKFVFVRDPYTRLLSAYMDKLVNK-YES 180
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Match: A0A7S2ZL45_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZL45_9RHOD) HSP 1 Score: 66.2 bits (160), Expect = 1.010e-7 Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = 2 Query: 356 LITQETLKRLQVVVVLQDEGIVYCPIPKVASSEWKRAFRWMVGIEEWEGTRTNLHKLVTNGLERLTDRGLEETRFAFESDRYFKFVVVRDPAERLVSGFLNK 661 LI ETLK + YCP+PK+A S WK FR + G ++++ H +GL+ L D EE + + KFV VRDPA RL+S +L+K Sbjct: 206 LIVSETLKAM------------YCPLPKIACSNWKSLFRKLEGFKDYKNLAL-AHDKANSGLKYLKDYTEEEALKMVQDPEWLKFVFVRDPASRLLSAYLDK 294
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Match: A0A7S3ED89_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ED89_9RHOD) HSP 1 Score: 66.2 bits (160), Expect = 1.610e-7 Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = 2 Query: 356 LITQETLKRLQVVVVLQDEGIVYCPIPKVASSEWKRAFRWMVGIEEWEGTRTNLHKLVTNGLERLTDRGLEETRFAFESDRYFKFVVVRDPAERLVSGFLNK 661 LI ETLK + YCP+PK+A S WK FR + G ++++ H +GL+ L D EE + + KFV VRDPA RL+S +L+K Sbjct: 206 LIVSETLKAM------------YCPLPKIACSNWKSLFRKLEGFKDYKNLAL-AHDKANSGLKYLKDYTEEEALKMVQDPEWLKFVFVRDPASRLLSAYLDK 294 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1681.4575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1681.4575.1 >prot_L-elsbetiae_contig1681.4575.1 ID=prot_L-elsbetiae_contig1681.4575.1|Name=mRNA_L-elsbetiae_contig1681.4575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=405bp MMATESTAGGSVWSGRKLRSSSLLLLILAIVSSCRAAAGDEEAANAAAAAback to top mRNA from alignment at L-elsbetiae_contig1681:642..24420+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1681.4575.1 ID=mRNA_L-elsbetiae_contig1681.4575.1|Name=mRNA_L-elsbetiae_contig1681.4575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=23779bp|location=Sequence derived from alignment at L-elsbetiae_contig1681:642..24420+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1681:642..24420+ >mRNA_L-elsbetiae_contig1681.4575.1 ID=mRNA_L-elsbetiae_contig1681.4575.1|Name=mRNA_L-elsbetiae_contig1681.4575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2430bp|location=Sequence derived from alignment at L-elsbetiae_contig1681:642..24420+ (Laminarionema elsbetiae ELsaHSoW15)back to top |