mRNA_L-elsbetiae_contig168.4569.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig168.4569.1
Unique NamemRNA_L-elsbetiae_contig168.4569.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig168.4569.1 vs. uniprot
Match: A0A6H5JYU8_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU8_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 7.720e-34
Identity = 60/87 (68.97%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:   87 EKLGRCLATLGEGECLMAPTQLELAVCHRAKDHKRWGRGLPVGRSMLHLLDQHDWEYEVLCDQFRTNWLKFQPRSGVSIVRIFSIQV 347
            EKL R  A LG G CL+   +LELA+C R +DHKRW  G+PVG S LH+LDQHDWEYE LCDQFRT WLKFQP  GVSI RIFSIQ+
Sbjct:  269 EKLRRSSARLGPGHCLVISIELELAICRRVEDHKRWDPGMPVGSSTLHMLDQHDWEYEALCDQFRTKWLKFQPPRGVSIERIFSIQI 355
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BLAST of mRNA_L-elsbetiae_contig168.4569.1 vs. uniprot
Match: D8LKU5_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU5_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 5.250e-16
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 3 
Query:  129 CLMAPTQLELAVCHRAK-DHKRWGRG-LPVGRSM--LHLLDQHDWEYEVLCDQFRTNWLKFQPRSGVSIVRIFSIQV 347
            C+M   +LEL++C R + D K WG+  + VG S   L +LD  DWEYE LCD F+T WLK QP +GVSIVRIFSIQV
Sbjct:  426 CMMTSARLELSICLRHEGDLKDWGQSEISVGSSSSTLRILDDDDWEYEALCDLFKTRWLKPQPTNGVSIVRIFSIQV 502
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig168.4569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYU8_9PHAE7.720e-3468.97PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU5_ECTSI5.250e-1657.14TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig168contigL-elsbetiae_contig168:12876..13767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D8LKU5
KEGG koko:K06972
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons2
Model size423
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig168.4569.1prot_L-elsbetiae_contig168.4569.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig168 12949..13633 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.4319005-UTR-L-elsbetiae_contig168:12875..129481622815697.4319005-UTR-L-elsbetiae_contig168:12875..12948Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig168 12876..12948 -
1691683044.5024652-UTR-L-elsbetiae_contig168:12875..129481691683044.5024652-UTR-L-elsbetiae_contig168:12875..12948Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig168 12876..12948 -
1622815697.4662402-UTR-L-elsbetiae_contig168:13633..137671622815697.4662402-UTR-L-elsbetiae_contig168:13633..13767Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig168 13634..13767 -
1691683044.527923-UTR-L-elsbetiae_contig168:13633..137671691683044.527923-UTR-L-elsbetiae_contig168:13633..13767Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig168 13634..13767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.442002-CDS-L-elsbetiae_contig168:12948..131101622815697.442002-CDS-L-elsbetiae_contig168:12948..13110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig168 12949..13110 -
1691683044.512325-CDS-L-elsbetiae_contig168:12948..131101691683044.512325-CDS-L-elsbetiae_contig168:12948..13110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig168 12949..13110 -
1622815697.4518027-CDS-L-elsbetiae_contig168:13579..136331622815697.4518027-CDS-L-elsbetiae_contig168:13579..13633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig168 13580..13633 -
1691683044.5200348-CDS-L-elsbetiae_contig168:13579..136331691683044.5200348-CDS-L-elsbetiae_contig168:13579..13633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig168 13580..13633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig168.4569.1

>prot_L-elsbetiae_contig168.4569.1 ID=prot_L-elsbetiae_contig168.4569.1|Name=mRNA_L-elsbetiae_contig168.4569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MAPTQLELAVCHRAKDHKRWGRGLPVGRSMLHLLDQHDWEYEVLCDQFRT
NWLKFQPRSGVSIVRIFSIQV*
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mRNA from alignment at L-elsbetiae_contig168:12876..13767-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig168.4569.1 ID=mRNA_L-elsbetiae_contig168.4569.1|Name=mRNA_L-elsbetiae_contig168.4569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=892bp|location=Sequence derived from alignment at L-elsbetiae_contig168:12876..13767- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGACGACGATGGTACCCTGTCACTCACGCTGCATTTACTAGGTCTG
CACCTCCTACAGTCCGGGGACCTGACGGAGGCGGAGGAGAAACTGGGGCG
CTGTTTGGCAACGTTGGGGGAAGGGGAGTGTTTGATGGCGCCCACTCAGC
TGGAGCTAGCGGTATGTCATCGAGCAAAGGATCACAAGGTTAGTGTGTCG
CCTTTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTGAT
TATATTCCATGTTTTCTGGTTCCGGTCTGTGCTTTGCAATTTTTTCGTCG
AATGTGTCACCCAGGAGGTGACAGGATCTATCTGCCGCCTTTGCAGTGTT
TGTGGTGAGACTGCAAAATTCGCTCGAGGTTGCAAAAGACTCGGAGAGTG
GTCGCGTACAATTGTAGCAGCGTACCCCCTATCTTTGTTGGCTATTCGCG
TGCGTGTGTGGACCAAAATGAAGGTTGCGTCGCGGCTGCCCATTTCTGAC
TCGATACTTCACAAGTGGGCAAGCAGTGGGTTCCGCCATAACAATGCTCG
CCTTCGATTTGTGTACTGTTTGATGCCGGTGTTTCTCTCTCGTGTTGTTT
TGACTTCTTGCCTCTTGGTCGCCATGTGGGCCCCCTTTCGGCAACGCTGG
CAAACAGCGCTGGGGTCGAGGTTTACCTGTGGGAAGAAGCATGTTGCACC
TGCTTGATCAACATGACTGGGAGTACGAGGTACTGTGCGATCAGTTCAGA
ACCAACTGGCTCAAGTTCCAGCCGCGAAGTGGAGTGTCGATCGTTCGTAT
TTTCAGCATTCAGGTATGACAGACTGGTCCTACAGCACGCTGGGGTGTGA
AGATTCCCGTAGGTTAGCCATCATATCGAAGCTCAACGTCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig168:12876..13767-

>mRNA_L-elsbetiae_contig168.4569.1 ID=mRNA_L-elsbetiae_contig168.4569.1|Name=mRNA_L-elsbetiae_contig168.4569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig168:12876..13767- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCCCACTCAGCTGGAGCTAGCGGTATGTCATCGAGCAAAGGATCA
CAAGATGGCGCCCACTCAGCTGGAGCTAGCGGTATGTCATCGAGCAAAGG
ATCACAAGCGCTGGGGTCGAGGTTTACCTGTGGGAAGAAGCATGTTGCAC
CTGCTTGATCAACATGACTGGGAGTACGAGGTACTGTGCGATCAGTTCAG
AACCAACTGGCTCAAGTTCCAGCCGCGAAGTGGAGTGTCGATCGTTCGTA
TTTTCAGCATTCAGGTATGACGCTGGGGTCGAGGTTTACCTGTGGGAAGA
AGCATGTTGCACCTGCTTGATCAACATGACTGGGAGTACGAGGTACTGTG
CGATCAGTTCAGAACCAACTGGCTCAAGTTCCAGCCGCGAAGTGGAGTGT
CGATCGTTCGTATTTTCAGCATTCAGGTATGA
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