mRNA_L-elsbetiae_contig168.4570.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig168.4570.1
Unique NamemRNA_L-elsbetiae_contig168.4570.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig168.4570.1 vs. uniprot
Match: A0A6H5JYU8_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU8_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.140e-19
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = -3 
Query:  152 LRQAGNHVKAERVLKQCLSILKARGC-RGRDGILAATLCSLGGCLLEAGQEQEDARKVREAEGILRRGLFEAESDGDDSAKPALCMNSLGAFAR 430
            L+Q GN V+AERVLK+C+SIL  R   +GRDGILAATL  LG CLL+AG EQ++  K++EAEGILRR L  AE DG+DSA      N+L   +R
Sbjct:   26 LQQQGNLVEAERVLKECVSILDGRRYEKGRDGILAATLGMLGECLLDAGIEQKEGDKMKEAEGILRRALVAAELDGEDSA----IANALSELSR 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig168.4570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYU8_9PHAE1.140e-1958.51PARP catalytic domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig168contigL-elsbetiae_contig168:13950..14438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.3506057-CDS-L-elsbetiae_contig168:13949..144381622815697.3506057-CDS-L-elsbetiae_contig168:13949..14438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig168 13950..14438 +
1691683044.4605029-CDS-L-elsbetiae_contig168:13949..144381691683044.4605029-CDS-L-elsbetiae_contig168:13949..14438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig168 13950..14438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig168.4570.1prot_L-elsbetiae_contig168.4570.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig168 13950..14438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig168.4570.1

>prot_L-elsbetiae_contig168.4570.1 ID=prot_L-elsbetiae_contig168.4570.1|Name=mRNA_L-elsbetiae_contig168.4570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
DRIASPRHNPSSSCVLITILSCEPRLASRISRQRLSSSSASPSFLICARP
ISRRHRESSYRALASRSHLHPTRLRTTRVLVFPRPPLLCARLPVLALLPK
GTRPASTGWLPICRHVLDNLWPSGLTNTVSTRVRPSRGFLLVEDVVRALA
SPSLPTWPSAQQ*
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mRNA from alignment at L-elsbetiae_contig168:13950..14438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig168.4570.1 ID=mRNA_L-elsbetiae_contig168.4570.1|Name=mRNA_L-elsbetiae_contig168.4570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=489bp|location=Sequence derived from alignment at L-elsbetiae_contig168:13950..14438+ (Laminarionema elsbetiae ELsaHSoW15)
GATCGCATTGCCTCTCCAAGGCATAATCCCAGTTCGAGCTGCGTGCTTAT
CACCATATTATCATGTGAGCCCAGGTTGGCCTCCCGAATTTCCAGACAGC
GCCTAAGCAGCTCTTCCGCCTCCCCTAGCTTCCTTATCTGTGCAAGGCCC
ATCTCGCGAAGGCACCGAGAGAGTTCATACAGAGCGCTGGCTTCGCGGAG
TCATCTCCATCCGACTCGGCTTCGAACAACCCGCGTCTTAGTATTCCCTC
GGCCTCCCTTACTTTGCGCGCGTCTTCCTGTTCTTGCCCTGCTTCCAAAA
GGCACCCGCCCAGCGAGCACAGGGTGGCTGCCAATATGCCGTCACGTCCT
CGACAACCTCTGGCCTTCAGGATTGACAAACACTGTTTCAACACGCGTTC
GGCCTTCACGTGGTTTCCTGCTTGTCGAAGATGTTGTCCGCGCTCTTGCA
TCGCCTTCACTTCCGACATGGCCATCAGCACAGCAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig168:13950..14438+

>mRNA_L-elsbetiae_contig168.4570.1 ID=mRNA_L-elsbetiae_contig168.4570.1|Name=mRNA_L-elsbetiae_contig168.4570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig168:13950..14438+ (Laminarionema elsbetiae ELsaHSoW15)
GATCGCATTGCCTCTCCAAGGCATAATCCCAGTTCGAGCTGCGTGCTTAT
CACCATATTATCATGTGAGCCCAGGTTGGCCTCCCGAATTTCCAGACAGC
GCCTAAGCAGCTCTTCCGCCTCCCCTAGCTTCCTTATCTGTGCAAGGCCC
ATCTCGCGAAGGCACCGAGAGAGTTCATACAGAGCGCTGGCTTCGCGGAG
TCATCTCCATCCGACTCGGCTTCGAACAACCCGCGTCTTAGTATTCCCTC
GGCCTCCCTTACTTTGCGCGCGTCTTCCTGTTCTTGCCCTGCTTCCAAAA
GGCACCCGCCCAGCGAGCACAGGGTGGCTGCCAATATGCCGTCACGTCCT
CGACAACCTCTGGCCTTCAGGATTGACAAACACTGTTTCAACACGCGTTC
GGCCTTCACGTGGTTTCCTGCTTGTCGAAGATGTTGTCCGCGCTCTTGCA
TCGCCTTCACTTCCGACATGGCCATCAGCACAGCAGTAAGATCGCATTGC
CTCTCCAAGGCATAATCCCAGTTCGAGCTGCGTGCTTATCACCATATTAT
CATGTGAGCCCAGGTTGGCCTCCCGAATTTCCAGACAGCGCCTAAGCAGC
TCTTCCGCCTCCCCTAGCTTCCTTATCTGTGCAAGGCCCATCTCGCGAAG
GCACCGAGAGAGTTCATACAGAGCGCTGGCTTCGCGGAGTCATCTCCATC
CGACTCGGCTTCGAACAACCCGCGTCTTAGTATTCCCTCGGCCTCCCTTA
CTTTGCGCGCGTCTTCCTGTTCTTGCCCTGCTTCCAAAAGGCACCCGCCC
AGCGAGCACAGGGTGGCTGCCAATATGCCGTCACGTCCTCGACAACCTCT
GGCCTTCAGGATTGACAAACACTGTTTCAACACGCGTTCGGCCTTCACGT
GGTTTCCTGCTTGTCGAAGATGTTGTCCGCGCTCTTGCATCGCCTTCACT
TCCGACATGGCCATCAGCACAGCAGTAA
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