prot_L-elsbetiae_contig16789.4566.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16789.4566.1
Unique Nameprot_L-elsbetiae_contig16789.4566.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length596
Homology
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BLAST of mRNA_L-elsbetiae_contig16789.4566.1 vs. uniprot
Match: D8LPP9_ECTSI (CCCH-type Zn finger-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPP9_ECTSI)

HSP 1 Score: 372 bits (956), Expect = 2.580e-118
Identity = 302/626 (48.24%), Postives = 352/626 (56.23%), Query Frame = 0 
Query:    1 MFGTGGGF------APSAGVGQSDSTPQLGREAAPTPEAA-ANPVGWRTNPATPAPLPNAGSGGAAASAA-DCFYFSQGTCSKGYNCLFRHNEAARXXXXXXXXXXXXXXXXXXXXXXXXPVGGARGQGMGGGRGGRFGTXXXMGGGRGIFGGGRGLPRAQQGWETVDRSQQACVFFAQGKCTKGEACPFSHSNPAEEGHNQAPVSTPTSQPQGVTGGQVQPVSAGPPLARMPAARDSGVPQMEVEAAAVAVGTNGVRLSSTGFSTKARG-----PASASVAG-GRNGPGLSPNQVGAFGGGTT--GPAAVAGSASKMSFVTGRNGQQQARVPAASLDQHQETPGHAGIIALPDGGFVTRKRAAELQLRRDERSEPEPRQVRQRDGREHGRAQERGPALRLGNGGVTPSGRVSIMDRLGPAKKQSPERAPTRARVEASARPRPEAPGQQGRKREEPRQHSTTPVEHPVL-----------RVQSSARLTRRAESGRGDGISALQVTRPTAAKQQHKSPALDFKIPSLEEIKSRKAKAEGAAPEAA-KRREGGPGRKERKPVT-TLSAKQSVPDVLTPHSS--ARAVAAELQTPVEELAPAPTNAPTVPSDPPQLDAEDMAEFSEWL 595
            MFGTGGGF       P+ G GQ ++TP +G    P  + + A P G + +    AP PN G   AAA AA DC+YF QGTC+KG NCLFRH+EAAR                        PV   RGQGMGGGRGGRFG  XXM  GRG     RG PR Q GWETVDRS+Q CVFF QGKCTKG+ACPFSH+ P+E G +QA  +    Q   V  G+ QP +     A +PAAR+  VPQ +  A+            S G  TKA G      AS  V+G GR        +VGAFG G +   PA    SA K  +VT RNGQ +A    +S DQ QE P   GII LPDGG VTRKRAAELQLR+DER + E R VRQRDGRE GRAQER P    G+ GV P GRV I+DRLGP   Q+ + APT   + A AR R EAP  Q RKREEPR H  TPVE P L           RV +SA  TRR   GRG G  +       A   Q KS ALDFKIP+L+EIKSRKAKAE AAP    KR +        KP++ T +A  +V +  T  +S  +  V  +   P+           TV SDPPQLDAEDM EFSEWL
Sbjct:    1 MFGTGGGFXXXXXXVPTPGFGQRETTPAVGAAETPGGQVSTAQPFGQQASGTNAAPSPNPGKIAAAAPAAGDCYYFLQGTCTKGNNCLFRHSEAARASGIVCRFWQNGFCKDDVNCPFLHPV---RGQGMGGGRGGRFGGGXXMAAGRGGXXXXRGGPRLQ-GWETVDRSKQTCVFFVQGKCTKGDACPFSHAIPSEGGVSQAAEANHLPQRAAVPEGRPQPPAMDSSPAPVPAARNDSVPQTKTSASEA----------SRGEETKANGIPGQSSASVRVSGAGREEARSFSRRVGAFGDGASKADPALAVASAGKA-YVTARNGQARA---TSSSDQRQEAP---GIIVLPDGGLVTRKRAAELQLRKDERGDAEARNVRQRDGREQGRAQERRPTS--GSRGVLPVGRVPILDRLGPVT-QASDTAPTTEWIVAPARIRREAPTLQARKREEPRPH-VTPVERPGLQPSSSSSLPRSRVMASALPTRRTGGGRGAGGDSTSAIARPAVVAQRKSSALDFKIPTLDEIKSRKAKAEVAAPRVTTKRDQAFSASNGEKPMSATPAAPDAVEEAPTSPNSVVSTTVGVQPSLPLXXX----XXXXTVQSDPPQLDAEDMDEFSEWL 597
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16789.4566.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPP9_ECTSI2.580e-11848.24CCCH-type Zn finger-containing protein n=2 Tax=Ect... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 60..85
e-value: 0.012
score: 24.8
coord: 160..186
e-value: 1.5E-4
score: 31.1
coord: 89..114
e-value: 0.001
score: 28.3
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 88..115
score: 12.155
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 160..187
score: 15.732
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 59..86
score: 12.286
IPR041686Zinc-finger CCCH domainPFAMPF15663zf-CCCH_3coord: 62..112
e-value: 7.1E-12
score: 45.5
NoneNo IPR availablePFAMPF18345zf_CCCH_4coord: 166..184
e-value: 2.4E-7
score: 30.6
NoneNo IPR availableGENE3D4.10.1000.10coord: 157..212
e-value: 5.4E-6
score: 28.3
coord: 57..120
e-value: 6.0E-11
score: 44.2
NoneNo IPR availablePANTHERPTHR15725ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAININGcoord: 63..205
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 92..113
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 160..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16789contigL-elsbetiae_contig16789:624..3084 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16789.4566.1mRNA_L-elsbetiae_contig16789.4566.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16789 408..3133 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16789.4566.1 ID=prot_L-elsbetiae_contig16789.4566.1|Name=mRNA_L-elsbetiae_contig16789.4566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=596bp
MFGTGGGFAPSAGVGQSDSTPQLGREAAPTPEAAANPVGWRTNPATPAPL
PNAGSGGAAASAADCFYFSQGTCSKGYNCLFRHNEAARASGTVCRFWQNG
FCKDDANCSFQHPVGGARGQGMGGGRGGRFGTGRGMGGGRGIFGGGRGLP
RAQQGWETVDRSQQACVFFAQGKCTKGEACPFSHSNPAEEGHNQAPVSTP
TSQPQGVTGGQVQPVSAGPPLARMPAARDSGVPQMEVEAAAVAVGTNGVR
LSSTGFSTKARGPASASVAGGRNGPGLSPNQVGAFGGGTTGPAAVAGSAS
KMSFVTGRNGQQQARVPAASLDQHQETPGHAGIIALPDGGFVTRKRAAEL
QLRRDERSEPEPRQVRQRDGREHGRAQERGPALRLGNGGVTPSGRVSIMD
RLGPAKKQSPERAPTRARVEASARPRPEAPGQQGRKREEPRQHSTTPVEH
PVLRVQSSARLTRRAESGRGDGISALQVTRPTAAKQQHKSPALDFKIPSL
EEIKSRKAKAEGAAPEAAKRREGGPGRKERKPVTTLSAKQSVPDVLTPHS
SARAVAAELQTPVEELAPAPTNAPTVPSDPPQLDAEDMAEFSEWL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR041686Znf-CCCH_3
IPR036855Znf_CCCH_sf