mRNA_L-elsbetiae_contig16771.4562.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16771.4562.1
Unique NamemRNA_L-elsbetiae_contig16771.4562.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Match: A0A6H5KD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD62_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.280e-44
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    2 GQIQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNPKDSNTFASASLDR 229
            G IQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGH+HYVMMVKFN KDSNTFASASLDR
Sbjct:  123 GTIQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHAHYVMMVKFNLKDSNTFASASLDR 198
[Close]
BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Match: A0A7S3ZMX6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMX6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.510e-38
Identity = 55/75 (73.33%), Postives = 68/75 (90.67%), Query Frame = 2 
Query:    5 QIQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNPKDSNTFASASLDR 229
            +++  EAH DYIR++E+HPTLPY+LS+SDDMS+KLW+WE+ WDCT  FEGH+HYVMM KFNPKD+NTFASASLDR
Sbjct:   23 KVKDMEAHADYIRFVEIHPTLPYILSSSDDMSIKLWNWEQNWDCTSSFEGHAHYVMMCKFNPKDTNTFASASLDR 97
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BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Match: A0A392PJT1_9FABA (Coatomer subunit beta'-2-like (Fragment) n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A392PJT1_9FABA)

HSP 1 Score: 132 bits (332), Expect = 1.680e-38
Identity = 57/75 (76.00%), Postives = 67/75 (89.33%), Query Frame = 2 
Query:    5 QIQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNPKDSNTFASASLDR 229
            +++ +EAHTDYIR + VHPTLPYVLS+SDDM +KLWDWE+ W CTQ+FEGHSHYVM V FNPKD+NTFASASLDR
Sbjct:   31 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 105
[Close]
BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Match: A0A7S1D8T3_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8T3_CYCTE)

HSP 1 Score: 132 bits (333), Expect = 2.920e-38
Identity = 56/75 (74.67%), Postives = 70/75 (93.33%), Query Frame = 2 
Query:    5 QIQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNPKDSNTFASASLDR 229
            +++ +EAH DYIR LE+HP+LPYVLS+SDDM++KLWDW+R +DCTQ+FEGH+HYVM VKFNPKD+NTFASASLDR
Sbjct:   52 KVKEFEAHADYIRSLEIHPSLPYVLSSSDDMTIKLWDWDRGFDCTQLFEGHAHYVMQVKFNPKDTNTFASASLDR 126
[Close]
BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.490e-37
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 2 
Query:    5 QIQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNPKDSNTFASASLDR 229
            ++ AWEAHTDYIR++EVHP LPYVLS SDDMS+KLWDWER WDC QVFEGH HYVMM+K NP+D+NTFASASLDR
Sbjct:   91 KVNAWEAHTDYIRFVEVHPNLPYVLSCSDDMSIKLWDWERGWDCCQVFEGHVHYVMMIKVNPRDTNTFASASLDR 165
[Close]
BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Match: A0A7S2XXQ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ5_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.030e-37
Identity = 58/75 (77.33%), Postives = 71/75 (94.67%), Query Frame = 2 
Query:    5 QIQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNPKDSNTFASASLDR 229
            ++ AWEAHTDYIR+LEVHP+LP +LS+SDDM+++LWDWE+ WDC QVFEGH+HYVMMV+FNPKD+NTFASASLDR
Sbjct:   91 KVHAWEAHTDYIRFLEVHPSLPNILSSSDDMTIRLWDWEKNWDCIQVFEGHAHYVMMVRFNPKDTNTFASASLDR 165
[Close]
BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Match: UPI000B8CB730 (coatomer subunit beta'-2 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CB730)

HSP 1 Score: 132 bits (333), Expect = 4.660e-37
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 2 
Query:    5 QIQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNPKDSNTFASASLDR 229
            +I+ +EAHTDYIR + VHPTLPYVLS+SDDM +KLWDWE+ W CTQ+FEGHSHYVM V FNPKD+NTFASASLDR
Sbjct:   43 KIKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 117
[Close]
BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Match: A0A2N9GN71_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GN71_FAGSY)

HSP 1 Score: 130 bits (327), Expect = 2.210e-36
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 2 
Query:   11 QAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNPKDSNTFASASLDR 229
            Q  EAHTDYIR + VHPTLPYVLS+SDDM +KLWDWE+ W CTQ+FEGHSHYVM V FNPKD+NTFASASLDR
Sbjct:   59 QKVEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 131
[Close]
BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.410e-36
Identity = 58/76 (76.32%), Postives = 70/76 (92.11%), Query Frame = 2 
Query:    5 QIQAWE-AHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNPKDSNTFASASLDR 229
            +++AWE AH DYIRY+EVHPTLPYVL++SDD+++KLWDWE+ WDCT VFEGH HYVMM+K NPKD+NTFASASLDR
Sbjct:   91 KVKAWERAHDDYIRYIEVHPTLPYVLTSSDDLTIKLWDWEKNWDCTNVFEGHGHYVMMIKINPKDTNTFASASLDR 166
[Close]
BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Match: A0A1V9YT62_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YT62_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.570e-36
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = 2 
Query:    5 QIQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNPKDSNTFASASLDR 229
            ++ A++AHTDYIRYLEVHP LP VLS +DDM+VK+WDW++ W CTQVFEGH HYVMM KFNPKD+NTFA+ASLDR
Sbjct:   91 KVTAFDAHTDYIRYLEVHPVLPIVLSCADDMTVKMWDWDKNWLCTQVFEGHGHYVMMAKFNPKDTNTFATASLDR 165
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16771.4562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD62_9PHAE1.280e-4496.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3ZMX6_9STRA1.510e-3873.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A392PJT1_9FABA1.680e-3876.00Coatomer subunit beta'-2-like (Fragment) n=2 Tax=P... [more]
A0A7S1D8T3_CYCTE2.920e-3874.67Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A835YRX4_9STRA1.490e-3780.00Coatomer WD associated region-domain-containing pr... [more]
A0A7S2XXQ5_9STRA2.030e-3777.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI000B8CB7304.660e-3777.33coatomer subunit beta'-2 n=1 Tax=Carica papaya Tax... [more]
A0A2N9GN71_FAGSY2.210e-3679.45Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A7S1Y0J4_9STRA2.410e-3676.32Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A1V9YT62_9STRA2.570e-3674.67Uncharacterized protein (Fragment) n=1 Tax=Achlya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16771contigL-elsbetiae_contig16771:803..1898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.9005878-CDS-L-elsbetiae_contig16771:803..8951622815696.9005878-CDS-L-elsbetiae_contig16771:803..895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16771 804..895 -
1691683044.214757-CDS-L-elsbetiae_contig16771:803..8951691683044.214757-CDS-L-elsbetiae_contig16771:803..895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16771 804..895 -
1622815696.912607-CDS-L-elsbetiae_contig16771:1756..18981622815696.912607-CDS-L-elsbetiae_contig16771:1756..1898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16771 1757..1898 -
1691683044.2239716-CDS-L-elsbetiae_contig16771:1756..18981691683044.2239716-CDS-L-elsbetiae_contig16771:1756..1898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16771 1757..1898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16771.4562.1prot_L-elsbetiae_contig16771.4562.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16771 804..1898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16771.4562.1

>prot_L-elsbetiae_contig16771.4562.1 ID=prot_L-elsbetiae_contig16771.4562.1|Name=mRNA_L-elsbetiae_contig16771.4562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
WSDPSVGGPHRLHPLPGGAPDAAVRAVRLGRHERQALGLGEAVGLHPGVR
GPLSLRHDGQVQPQGLQHLRQRLPRQVR
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mRNA from alignment at L-elsbetiae_contig16771:803..1898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16771.4562.1 ID=mRNA_L-elsbetiae_contig16771.4562.1|Name=mRNA_L-elsbetiae_contig16771.4562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1096bp|location=Sequence derived from alignment at L-elsbetiae_contig16771:803..1898- (Laminarionema elsbetiae ELsaHSoW15)
TGGTCAGATCCAAGCGTGGGAGGCCCACACCGACTACATCCGCTACCTGG
AGGTGCACCCGACGCTGCCGTACGTGCTGTCCGCCTCGGACGACATGAGC
GTCAAGCTCTGGGACTGGGAGAGGCAGTGGGACTGCACCCAGGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTTTTGTG
GAAAAAATAACCGGTGGTCGATTTGCAGGCGTGGTGTGACGTCATAGAAC
CGGTGATCGAGCGCCGGTGTGTGACGTCATACATAGAAGCGGCGATCGAG
TGCAGGCGTGATGTGCGTCATACATGGAACCTGCGATTGATCGCAGGCGT
GGTGTGACGTCATAGAACCGGCGGTAGATCAATCGCAGGTAGGTGTGGTG
TGCGAGTTTGGTTGTTCGGTAAGTCTTCCCTACCGTACTCCCTTCATGGG
TTCGTGCTCGTGTTGTTCTTGAACGCGGTTTGGCTTCTTTGGACCTCAAA
AGGAGTTGAGCTGTGGGGCGGGCAGGTCTGTCATATACACTTCGAAGTGT
AAAGGTAAATGCATGCACTGCACCTTCTGTAGACATAGGATTCATAACAC
GCAGATACCAAGAGGCATACTTCTATATATCTAAAGTATATTCTTCGAAG
TATTTTTTATCTTCTTCGTCGCTTTTATTTCCAGTGCTCGATGGGCTGGT
TCCCTGTCACGAGGACATCTTGCCAGAGTACTGAACCGTGGTCACACAGA
AGGGTTCCTTTCCCTGAGGCCCCCACTCCCCCCCGCCTGCGGTGCTTGCC
TGAGATTTTTGTCTCGAGAAAGGTTCATCCGTCATCCCTTTCCCTCGTCC
ACGGAGAGGCATGAACGGCCCCAGTACACATGTACATGGTTCTACAAGAT
GCGAACACACACAACGCGAAGTGGGCCGTTTGCTTGCGCCAACACGTACT
TGCGGACTTAACACGTGTGTGTTTTGTGCCGCGCGCGACTAAATATGTTC
TAGGTGTTCGAGGGCCACTCTCACTACGTCATGATGGTCAAGTTCAACCC
CAAGGACTCCAACACCTTCGCCAGCGCCTCCCTCGACAGGTACGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16771:803..1898-

>mRNA_L-elsbetiae_contig16771.4562.1 ID=mRNA_L-elsbetiae_contig16771.4562.1|Name=mRNA_L-elsbetiae_contig16771.4562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig16771:803..1898- (Laminarionema elsbetiae ELsaHSoW15)
TGGTCAGATCCAAGCGTGGGAGGCCCACACCGACTACATCCGCTACCTGG
AGGTGCACCCGACGCTGCCGTACGTGCTGTCCGCCTCGGACGACATGAGC
GTCAAGCTCTGGGACTGGGAGAGGCAGTGGGACTGCACCCAGTGGTCAGA
TCCAAGCGTGGGAGGCCCACACCGACTACATCCGCTACCTGGAGGTGCAC
CCGACGCTGCCGTACGTGCTGTCCGCCTCGGACGACATGAGCGTCAAGCT
CTGGGACTGGGAGAGGCAGTGGGACTGCACCCAGGTGTTCGAGGGCCACT
CTCACTACGTCATGATGGTCAAGTTCAACCCCAAGGACTCCAACACCTTC
GCCAGCGCCTCCCTCGACAGGTACGTGTGTTCGAGGGCCACTCTCACTAC
GTCATGATGGTCAAGTTCAACCCCAAGGACTCCAACACCTTCGCCAGCGC
CTCCCTCGACAGGTACGT
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