mRNA_L-elsbetiae_contig1677.4561.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1677.4561.1
Unique NamemRNA_L-elsbetiae_contig1677.4561.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1677.4561.1 vs. uniprot
Match: D7G754_ECTSI (Protein kinase domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G754_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 5.390e-42
Identity = 82/147 (55.78%), Postives = 104/147 (70.75%), Query Frame = 1 
Query:   10 PSLTGKVLKGTWRLGELVGTGACADVYE-VTGVSDGVGTQAGKFVAKIAPLPADSPPQS----KKKHNEEKRNANMLFYERTLYQGYLRPLRDPGCVQIPDQGYGEDQDLRYLVMTRLGPDVLAAKTESEPWPVSRTAGYAQQMLQI 435
            PSLTG VLK  W+LG LVG+G CA+VYE +   ++  G   G FVAKIAPLP   PP      K+K  EE+++A+M++YE TLY+G+L      G V+IP  GYGEDQ+LRYLVM+RLGPDV AA  +SE W V+R AGYA+QML +
Sbjct:    3 PSLTGTVLKNKWKLGALVGSGGCAEVYEAIDARAESAGASDGPFVAKIAPLPVGLPPAMTKGRKRKKTEEEKHADMIYYEYTLYKGFL--AEHGGVVEIPPGGYGEDQNLRYLVMSRLGPDVEAALKKSEGWSVARKAGYARQMLAL 147
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BLAST of mRNA_L-elsbetiae_contig1677.4561.1 vs. uniprot
Match: D7FQK2_ECTSI (Protein kinase domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK2_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 2.410e-33
Identity = 72/146 (49.32%), Postives = 91/146 (62.33%), Query Frame = 1 
Query:   16 LTGKVLKGTWRLGELVGTGACADVYEVTGVSDGVGTQAGKFVAKIAPLPADSPPQSKK------KHNEEKRNANMLFYERTLYQGYLRPLRDPGCVQIPDQGYGEDQDLRYLVMTRLGPDVLAAKTESEPWPVSRTAGYAQQMLQI 435
            LTG VL   W+LG LVG+G CA+VYE         +  G FVAKIAP+P   P  +KK      +  EE+++A+M+ YE  LY   L   +  G V+IP  GYGEDQ+LRYLVMTRLG DV AA   S+ W V+R  GYA+QML +
Sbjct:    5 LTGTVLNKKWKLGALVGSGGCAEVYEAEATGSRGQSADGPFVAKIAPVPVALPLAAKKGRYAYKRKTEEEKHADMIHYEHVLYTASL--AKHVGVVEIPRNGYGEDQNLRYLVMTRLGLDVEAALKTSKGWSVARKTGYARQMLAL 148
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BLAST of mRNA_L-elsbetiae_contig1677.4561.1 vs. uniprot
Match: W7TN39_9STRA (Casein kinase n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN39_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.230e-15
Identity = 51/142 (35.92%), Postives = 80/142 (56.34%), Query Frame = 1 
Query:   22 GKVLKGTWRLGELVGTGACADVYEVTGVSDGVGTQAGKFVAKIAPLPADSPPQSKKKHNEE----KRNANMLFYERTLYQGYLRPLRDPGCVQIPDQ-GYGEDQDLRYLVMTRLGPDVLAA-KTESEPWPVSRTAGYAQQML 429
            G +L+G W+LG L+G GAC  V+ V  V+     Q  ++V K+APLP  +     +K N++    KRNA+ L+ E+ +Y+ YL  +  P    +P    YGED+  R+LVM RLG D+    +++   +  +  A Y +QML
Sbjct:   25 GLILRGRWKLGRLLGEGACGQVFAVEDVTGAQNEQ--EWVIKLAPLPPPAAAGVARKKNKKDESLKRNADTLYMEQLVYKNYLMGV--PHVPALPALLSYGEDKGFRFLVMQRLGQDLSQLFESQGRYFSPATLADYGKQML 162
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BLAST of mRNA_L-elsbetiae_contig1677.4561.1 vs. uniprot
Match: A0A7S3JYC0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYC0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.960e-9
Identity = 45/141 (31.91%), Postives = 64/141 (45.39%), Query Frame = 1 
Query:    7 LPSLTGKVLKGTWRLGELVGTGACADVYEVTGVSDGVGTQAGKFVAKIAPLPADSPPQSKKKHNEEKRNANMLFYERTLYQGYLRPLRDPGCVQIPDQGYGEDQDLRYLVMTRLGPDVLAAKTESEPWPVSRTAGYAQQML 429
            + SL G VL G WR+G L+G GACA VY  +   D        FV K + L          ++ E+KR A+ LF E  +Y             +     YGE++  RYLVM RLG  +    +E E + V++       M+
Sbjct:    1 MSSLEGSVLDGKWRVGHLLGVGACAQVYAASACDDEKSNDV--FVIKASKL---------SRNKEQKRLADTLFQEHLVYDQICNRYSRYFAHKYK---YGEEKGWRYLVMERLGHQI----SECEKYSVAQICSIGYDMV 123
[Close]
BLAST of mRNA_L-elsbetiae_contig1677.4561.1 vs. uniprot
Match: A0A448YXH9_9STRA (Protein kinase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXH9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.470e-8
Identity = 37/131 (28.24%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:   34 KGTWRLGELVGTGACADVYEVTGVSDGVGTQAGKFVAKIAPLPADSPPQSKKKHNEEKRNANMLFYERTLYQGYLRPLRDPGCVQIPDQG-------YGEDQDLRYLVMTRLG-------PDVLAAKTESE 384
            K  W++GE++G GACA V  +  + +G  T+   F  K+APLP     ++KK ++ ++ NA +L+YE+ +Y    R L+      +P+         YG++   R+  + R+        P +L +K+ S+
Sbjct:   14 KRKWKVGEILGHGACATVCSLGKIENGTCTET-NFAVKLAPLPVK---KTKKGNSPQEMNAKLLYYEQMIYTTQFRGLQGKLIPNVPNLSNSRDPPIYGDESGYRFFTLERMDTTISAVVPSLLMSKSSSK 140
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1677.4561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G754_ECTSI5.390e-4255.78Protein kinase domain containing protein n=2 Tax=E... [more]
D7FQK2_ECTSI2.410e-3349.32Protein kinase domain containing protein n=1 Tax=E... [more]
W7TN39_9STRA5.230e-1535.92Casein kinase n=3 Tax=Nannochloropsis gaditana Tax... [more]
A0A7S3JYC0_9STRA9.960e-931.91Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A448YXH9_9STRA1.470e-828.24Protein kinase domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1677contigL-elsbetiae_contig1677:15829..17046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue7.9e-36
Seed eggNOG ortholog2880.D7G754
KEGG koko:K02218
KEGG Pathwayko04011,ko04392,map04011,map04392
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-serine phosphorylation
EggNOG OGsKOG1164@1,KOG1165@2759
EC2.7.11.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Ec32 ortholog descriptionProtein kinase domain containing protein
Ec32 orthologEc-01_009000.1
Exons2
Model size435
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.8608227-CDS-L-elsbetiae_contig1677:15828..161131622815696.8608227-CDS-L-elsbetiae_contig1677:15828..16113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1677 15829..16113 +
1691683044.185541-CDS-L-elsbetiae_contig1677:15828..161131691683044.185541-CDS-L-elsbetiae_contig1677:15828..16113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1677 15829..16113 +
1622815696.8711777-CDS-L-elsbetiae_contig1677:16896..170461622815696.8711777-CDS-L-elsbetiae_contig1677:16896..17046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1677 16897..17046 +
1691683044.2007124-CDS-L-elsbetiae_contig1677:16896..170461691683044.2007124-CDS-L-elsbetiae_contig1677:16896..17046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1677 16897..17046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1677.4561.1prot_L-elsbetiae_contig1677.4561.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1677 15829..17046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1677.4561.1

>prot_L-elsbetiae_contig1677.4561.1 ID=prot_L-elsbetiae_contig1677.4561.1|Name=mRNA_L-elsbetiae_contig1677.4561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MPLPSLTGKVLKGTWRLGELVGTGACADVYEVTGVSDGVGTQAGKFVAKI
APLPADSPPQSKKKHNEEKRNANMLFYERTLYQGYLRPLRDPGCVQIPDQ
GYGEDQDLRYLVMTRLGPDVLAAKTESEPWPVSRTAGYAQQMLQI
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mRNA from alignment at L-elsbetiae_contig1677:15829..17046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1677.4561.1 ID=mRNA_L-elsbetiae_contig1677.4561.1|Name=mRNA_L-elsbetiae_contig1677.4561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig1677:15829..17046+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTTACCATCCCTGACCGGCAAAGTCTTGAAGGGCACATGGCGGCT
GGGTGAACTGGTGGGCACAGGCGCGTGCGCAGATGTTTACGAAGTGACGG
GCGTTTCAGACGGGGTCGGGACACAGGCTGGGAAGTTCGTCGCCAAGATT
GCCCCATTGCCGGCGGACTCACCTCCGCAATCTAAGAAGAAACACAACGA
GGAAAAAAGGAACGCCAACATGCTGTTTTACGAGCGCACACTATACCAGG
GGTATCTCCGCCCCCTTCGCGACCCTGGATGTGTGGTGAAGGTGCGTGTG
CACGGCCAAGTTGAGATAGGGCTGCTAAATTGCGGGGTGGTTGAAAGGTC
TCATATACGTACATACATTCATATCAGGCCAAACTCCATTGCTATCGGGG
GCCTTTTCGATAGCGATCAGATGGCGGGGGCTTGGCCCTCGCAGCCAGTA
AGAGATGGCAGCGCAGGAGATGGACCCTAATGTTGGGGTATTGGGGGAGC
CGGTCGAGAAAGAAATACCTCCGGAGGTGCTAACAGATGCCCTGGTGCGA
CAGTCGCTTCAGCATATGCAGTATTCAACCTCGGAACCGACATATGTGTG
CTTTTTTACTGTCAGTTCCGAGGTTGCTCTCAACCTCTTCTTTTCCGAGG
ACTCTCCAGCCTATTAGGCTGAGCACCACCGCCCCAAAAGTAGGGCAGGG
TATATGCGATTTGCGGATTACATTCGTCCATTTCGCCCCATCCTAGTTGA
GAGGCCCTTGTCCGAGAGAAATATGTGGTACACTAGGAGGGCCGCATCGA
TCGCCAGAGAGCGAGCCTTAACCCGATCATCGTCTAAGAGAACATCCCGT
TTCGTCTAGGCGCCATCATAACGCAATTGCTTGGGTGTACGAGAACAATA
ATGTGATATGCGGACGAAAGATCAGGACGAGGCTCCAGACCAGATTATCT
CAAGGCGGTGTGGCAGATGCATGTGGCCGGCGCCACGTATAGGGGCTCTC
GACTTTGGGTTTTGGAAGATAGAGCTGGCCGCTCTAATCTCAAGCACAAC
CATTTTCGCACGGACCAGCAGATTCCGGACCAAGGATACGGCGAAGATCA
AGATCTGCGGTATCTGGTGATGACCAGGCTCGGCCCTGATGTTCTGGCGG
CCAAAACGGAGAGCGAACCTTGGCCAGTGTCACGCACCGCCGGATACGCG
CAGCAAATGCTCCAGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1677:15829..17046+

>mRNA_L-elsbetiae_contig1677.4561.1 ID=mRNA_L-elsbetiae_contig1677.4561.1|Name=mRNA_L-elsbetiae_contig1677.4561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig1677:15829..17046+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTTACCATCCCTGACCGGCAAAGTCTTGAAGGGCACATGGCGGCT
GGGTGAACTGGTGGGCACAGGCGCGTGCGCAGATGTTTACGAAGTGACGG
GCGTTTCAGACGGGGTCGGGACACAGGCTGGGAAGTTCGTCGCCAAGATT
GCCCCATTGCCGGCGGACTCACCTCCGCAATCTAAGAAGAAACACAACGA
GGAAAAAAGGAACGCCAACATGCTGTTTTACGAGCGCACACTATACCAGG
GGTATCTCCGCCCCCTTCGCGACCCTGGATGTGTGATGCCGTTACCATCC
CTGACCGGCAAAGTCTTGAAGGGCACATGGCGGCTGGGTGAACTGGTGGG
CACAGGCGCGTGCGCAGATGTTTACGAAGTGACGGGCGTTTCAGACGGGG
TCGGGACACAGGCTGGGAAGTTCGTCGCCAAGATTGCCCCATTGCCGGCG
GACTCACCTCCGCAATCTAAGAAGAAACACAACGAGGAAAAAAGGAACGC
CAACATGCTGTTTTACGAGCGCACACTATACCAGGGGTATCTCCGCCCCC
TTCGCGACCCTGGATGTGTGCAGATTCCGGACCAAGGATACGGCGAAGAT
CAAGATCTGCGGTATCTGGTGATGACCAGGCTCGGCCCTGATGTTCTGGC
GGCCAAAACGGAGAGCGAACCTTGGCCAGTGTCACGCACCGCCGGATACG
CGCAGCAAATGCTCCAGATCCAGATTCCGGACCAAGGATACGGCGAAGAT
CAAGATCTGCGGTATCTGGTGATGACCAGGCTCGGCCCTGATGTTCTGGC
GGCCAAAACGGAGAGCGAACCTTGGCCAGTGTCACGCACCGCCGGATACG
CGCAGCAAATGCTCCAGATC
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