mRNA_L-elsbetiae_contig1674.4549.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1674.4549.1
Unique NamemRNA_L-elsbetiae_contig1674.4549.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1674.4549.1 vs. uniprot
Match: D7G4T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T4_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.940e-18
Identity = 159/477 (33.33%), Postives = 218/477 (45.70%), Query Frame = 3 
Query:   99 SSRSRSY-ERFASEREGGRRKDTADEEASTAIPPITNLTSEGGNSCASFPRRFRAKGRSVSSTGQEDAALQGLAGVAVCWLPPXXXXXXXXXXXXXARQLSP----SRIIPPSCTPRVGGSARSPRPPSPLPFPQHRSAGD-GEKKDCGSERPKEKEGESQPRNQ----RDTTAEGVDECEHEIGYRRGIRRSEGEVP--ETT-----RKDS--------SSNFMEGNRDRREKDRKGGWASSYEGSAAKRRADEVLARLEALEVSFARVEEQAAATSPANFISGGGVP-ELRRAGVRNDAASAPNTQSAAGAATFNEAPISIMATAELNGGVLQSSLHVPIEGVDSKDNFGNSSGASCPPPPLSKEARSRAREEK---------KEPAAISTTGSPSEPARRPEYGVAFPVAMHESDHPLPTGR---------------------------TGGTTQQQSEFYFNLGRRMMLDSIE 1343
            SS+SR + ER A E++ GR K+    + + AI P T    E  +     PR  + KGRS ++  QED AL  LA VAV WLPPXXXXXXXXXXXXX          S   P  C   V GS  +P           R+ G  G KKD   E   E    S+  ++    R  +   +D    + G R  +R + G     ETT      KD+        SS  ++GNR+  E+   GGWA S EGSAA+RRADEVLAR+ ALEV F RVE+Q   T+PA   +   VP  +  +  R+  A+A N+ S       N      +  AE+     +        G DS          S PPP L +++++R R++K          E  A++ +G  +   RR     A P AM E   P   GR                           +GGT +Q ++FYF++GR M+LD+ +
Sbjct:    5 SSQSRRHRERSAREQDCGRLKNQVVADGTIAISPPTTTEDEAHDLYYRSPRPRKNKGRSTTADSQEDTALLDLAEVAVSWLPPXXXXXXXXXXXXXXXXXXXXXXASSPCPSDCN--VEGSTGTPXX---XXXXCPRNGGPVGGKKDGYGEDSNEHSWASKDSSRWAYGRCQSVARIDGTPPKDGCRGEMRPTGGATAATETTTPVEEHKDTDGRRGGRESSGELQGNRNLEER---GGWAGSDEGSAARRRADEVLARISALEVYFDRVEDQVVRTAPAPAAAEAQVPGRVPLSKGRSSDAAASNSCSNPTLGVGNRGGQGEILLAEVETAQTEGQT-----GGDSSKALARGDRPSSPPP-LPRDSQTRTRKKKDDGEEEVLSSEEYAVANSGLRTLAPRRSNDAAAVPPAMLELS-PSKAGRGTLSRGFEVCDVGNGAGVSRGGNGESSSGGTNEQHNKFYFDVGRTMVLDTFQ 466
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BLAST of mRNA_L-elsbetiae_contig1674.4549.1 vs. uniprot
Match: A0A6H5L561_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L561_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.680e-9
Identity = 101/263 (38.40%), Postives = 124/263 (47.15%), Query Frame = 3 
Query:  174 EASTAIPPITNLTSEGGNSCASFPRRFRAKGRSVSSTGQEDAALQGLAGVAVCWLPPXXXXXXXXXXXXXARQ----LSPSRIIPPSCTPRVGGSARSPRPPSPLPFPQHRSAGD--GEKKDCGSERPKEKEGESQPRNQRDTTAEGV---------DECEHEIGYRRGIR-RSEGEVPETTRKDS--------SSNFMEGNRDRREKDRKGGWASSYEGSAAKRRADEVLARLEALEVSFARVEEQAAATSPANFISGGGVP 890
            E + AI P T    E  +     PR   +KGRS + + QED AL  LA VAV WLPPXXXXXXXXXXXXX R       PS   P  C   V GS  +            R+ G   G+K   G +  +            D   +GV         D C  E+    G    +E   P    KD+        SS  ++GNR+  E+   GGWA S EGSAA+RRADEVLAR+ ALE+ F RVE+Q   T PA   +G   P
Sbjct:    4 EGTIAISPPTTTEDEAHDLYYRSPRPHESKGRSTADS-QEDTALLDLAEVAVSWLPPXXXXXXXXXXXXXQRASIXXXXPSSPCPSDCN--VEGSTGTXXX---XXXXXXRNGGPVVGKKDGYGEDSNEYSWASRDSSRWADCRCQGVARVDGTPPKDGCRGEMRPTGGATVATETTNPAEEHKDTDGRRGGEKSSGELQGNRNLEER---GGWAGSDEGSAARRRADEVLARISALEIYFDRVEDQVVRTPPAPATAGAQAP 257
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1674.4549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T4_ECTSI1.940e-1833.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L561_9PHAE1.680e-938.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1674contigL-elsbetiae_contig1674:13198..15486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_000440.1
Exons3
Model size1612
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1674.4549.1prot_L-elsbetiae_contig1674.4549.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1674 13464..14497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.801548-UTR-L-elsbetiae_contig1674:13197..134631622815695.801548-UTR-L-elsbetiae_contig1674:13197..13463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1674 13198..13463 -
1691683043.5059495-UTR-L-elsbetiae_contig1674:13197..134631691683043.5059495-UTR-L-elsbetiae_contig1674:13197..13463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1674 13198..13463 -
1622815695.8482797-UTR-L-elsbetiae_contig1674:14497..150281622815695.8482797-UTR-L-elsbetiae_contig1674:14497..15028Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1674 14498..15028 -
1691683043.5395458-UTR-L-elsbetiae_contig1674:14497..150281691683043.5395458-UTR-L-elsbetiae_contig1674:14497..15028Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1674 14498..15028 -
1622815695.8582342-UTR-L-elsbetiae_contig1674:15322..154861622815695.8582342-UTR-L-elsbetiae_contig1674:15322..15486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1674 15323..15486 -
1691683043.5493526-UTR-L-elsbetiae_contig1674:15322..154861691683043.5493526-UTR-L-elsbetiae_contig1674:15322..15486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1674 15323..15486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.8146794-CDS-L-elsbetiae_contig1674:13463..138071622815695.8146794-CDS-L-elsbetiae_contig1674:13463..13807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1674 13464..13807 -
1691683043.5202508-CDS-L-elsbetiae_contig1674:13463..138071691683043.5202508-CDS-L-elsbetiae_contig1674:13463..13807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1674 13464..13807 -
1622815695.8248136-CDS-L-elsbetiae_contig1674:14190..144971622815695.8248136-CDS-L-elsbetiae_contig1674:14190..14497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1674 14191..14497 -
1691683043.529062-CDS-L-elsbetiae_contig1674:14190..144971691683043.529062-CDS-L-elsbetiae_contig1674:14190..14497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1674 14191..14497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1674.4549.1

>prot_L-elsbetiae_contig1674.4549.1 ID=prot_L-elsbetiae_contig1674.4549.1|Name=mRNA_L-elsbetiae_contig1674.4549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
MEGNRDRREKDRKGGWASSYEGSAAKRRADEVLARLEALEVSFARVEEQA
AATSPANFISGGGVPELRRAGVRNDAASAPNTQSAAGAATFNEAPISIMA
TAELNGGVLQSSLHVPIEGVDSKDNFGNSSGASCPPPPLSKEARSRAREE
KKEPAAISTTGSPSEPARRPEYGVAFPVAMHESDHPLPTGRTGGTTQQQS
EFYFNLGRRMMLDSIE*
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mRNA from alignment at L-elsbetiae_contig1674:13198..15486-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1674.4549.1 ID=mRNA_L-elsbetiae_contig1674.4549.1|Name=mRNA_L-elsbetiae_contig1674.4549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2289bp|location=Sequence derived from alignment at L-elsbetiae_contig1674:13198..15486- (Laminarionema elsbetiae ELsaHSoW15)
GGCAACTCCACCGCGAACGTTACCCCCCCCCTCCCGGCCCACCTCCCTCG
CCGACACTGAATCGGCTGCGAAGAAATATCTCAATTACAAGACGTGGCAG
CTCACGGTCGCGAAGTTATGAGCGATTTGCGAGCGAGCGTGAGGGGGGGA
GGCGAAAGGATACGGTGAGGCGTGAGTGCTGGTGGATTCATGTACGGTAT
ACCGCATCGAAAAAACGGATTGATCTTTATTGCCAAGCATGGAAGCCAAA
CGTTGTCAAGACTCCTCCTCGCGCATGGTTGGGAGCGGGTCTCGACAGTC
GCTTTTTGTTTCTCGAAAATCCAGGCCAGGTACCGTAAGGCAGCACCTAC
AAATACAGGCGCCATCGTAGCAAGCCTTTCTCGAGTGATGCACTCTTCTC
CCCGCCCTCTCCGAAGGCGTACCCTTTCCGATATGTCTTTTCTTCATTCT
CTTTCCAGGCCGACGAGGAAGCCTCTACGGCCATACCACCCATAACCAAC
CTTACCAGCGAGGGTGGCAACAGCTGCGCCTCCTTCCCTCGGCGGTTTCG
AGCGAAGGGCCGATCGGTGTCGTCCACCGGCCAAGAGGATGCTGCTCTTC
AAGGCCTAGCAGGGGTTGCGGTCTGCTGGCTACCCCCGCCTACTCCTCCA
CCCCCGGAGGCACGACGGCGGCGACGAGCGAGACAACTTTCGCCTTCGCG
GATAATCCCACCGTCATGCACTCCCCGTGTAGGCGGCAGCGCACGATCAC
CACGACCACCATCGCCACTACCCTTTCCACAACACCGCAGTGCAGGAGAC
GGCGAGAAGAAAGATTGCGGGAGTGAAAGACCGAAGGAGAAGGAAGGGGA
GAGCCAACCCCGGAACCAGAGGGATACCACTGCAGAGGGCGTTGACGAAT
GTGAGCACGAAATCGGGTACCGCCGTGGCATCCGGCGGAGCGAAGGCGAA
GTGCCGGAAACCACTCGAAAAGATAGCTCGTCTAATTTTATGGAGGGCAA
TCGGGACCGCCGGGAAAAGGATAGGAAAGGAGGCTGGGCCAGCAGTTACG
AGGGGTCGGCGGCCAAGCGAAGAGCGGACGAAGTTCTAGCGCGGCTAGAG
GCCCTAGAAGTTTCATTTGCCCGAGTCGAGGAGCAAGCCGCGGCAACATC
ACCTGCAAACTTTATCAGTGGGGGCGGTGTGCCCGAACTCAGGAGGGCGG
GCGTGCGAAACGATGCAGCGAGCGCACCCAACACCCAGTCGGCTGCTGGC
GCTGCGACCTTCAATGAAGCTCCGATATCGATCATGGCTACGGCAGGTGA
AATATTTGTTTCGCACGTGTAATGCCCTGGAAAAGCTAGACCAACCCTGA
GACGATGTTTGATCTATCTCAGACTCTCAACTTTCATCCAAGTTCCCTTC
CTCCGGCACAAAACTAACAAGTAAATGTCGCGCGAGTAAAGAGTCATGTT
TTCACGGAGGACCATGGTGTCATCAAACCGCTCAGCTAGGAGATAGATAG
AAGGTGAAAGAGGGAGCATTGCTGGCAGAAACTTGAAATGCTGGTTATTT
AACATCTTCAACAGGAAATGAACGGTGCCTCATCTGGGACCGACTAAGCC
CGGCAACGAATGAGTACCCCCCCCCCACCCACCCACCGCCGCCTCTTCAT
TGCCGCCCATTGCGCCAATCCCTCAGCAGAATTAAATGGAGGAGTTCTTC
AATCTAGCCTACATGTTCCCATCGAAGGGGTAGACAGCAAAGACAACTTC
GGTAATTCGAGCGGTGCATCGTGCCCTCCGCCTCCGTTGTCGAAGGAAGC
ACGAAGCCGGGCCCGGGAAGAAAAAAAAGAACCTGCCGCCATCAGCACTA
CTGGTTCTCCCAGTGAGCCAGCACGACGTCCCGAGTATGGCGTCGCGTTT
CCCGTGGCGATGCACGAGTCAGATCACCCTTTGCCAACCGGGCGCACCGG
AGGTACCACACAACAGCAGAGCGAGTTTTATTTTAACTTGGGGAGGCGTA
TGATGCTAGATAGCATCGAATAAGGCCCCGACTGAGTCGGTGTTGTTGCG
GTCGGATATCTGTGCGGTCAGAGAGGGATGCCGAGTTCGCTCCGAAGCGG
ATGTCTTGTAGTGAAAAAGACGGGTAATATTGTTGCTGCACTGCTGTGTC
ATGAACACTAGACTTTAGTCTATCTTATGTAGTCTTGTAGACATGGAGGA
ATATGAAAACAAAACGAGTTTTCGCGTTTTCATCTGCGGCGGGCGGCCGG
TGTGTTCGTTGATTGCCTTTCTTGTTTGTGAGCAGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1674:13198..15486-

>mRNA_L-elsbetiae_contig1674.4549.1 ID=mRNA_L-elsbetiae_contig1674.4549.1|Name=mRNA_L-elsbetiae_contig1674.4549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig1674:13198..15486- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGGCAATCGGGACCGCCGGGAAAAGGATAGGAAAGGAGGCTGGGC
CAGCAGTTACGAGGGGTCGGCGGCCAAGCGAAGAGCGGACGAAGTTCTAG
CGCGGCTAGAGGCCCTAGAAGTTTCATTTGCCCGAGTCGAGGAGCAAGCC
GCGGCAACATCACCTGCAAACTTTATCAGTGGGGGCGGTGTGCCCGAACT
CAGGAGGGCGGGCGTGCGAAACGATGCAGCGAGCGCACCCAACACCCAGT
CGGCTGCTGGCGCTGCGACCTTCAATGAAGCTCCGATATCGATCATGGCT
ACGGCAGATGGAGGGCAATCGGGACCGCCGGGAAAAGGATAGGAAAGGAG
GCTGGGCCAGCAGTTACGAGGGGTCGGCGGCCAAGCGAAGAGCGGACGAA
GTTCTAGCGCGGCTAGAGGCCCTAGAAGTTTCATTTGCCCGAGTCGAGGA
GCAAGCCGCGGCAACATCACCTGCAAACTTTATCAGTGGGGGCGGTGTGC
CCGAACTCAGGAGGGCGGGCGTGCGAAACGATGCAGCGAGCGCACCCAAC
ACCCAGTCGGCTGCTGGCGCTGCGACCTTCAATGAAGCTCCGATATCGAT
CATGGCTACGGCAGAATTAAATGGAGGAGTTCTTCAATCTAGCCTACATG
TTCCCATCGAAGGGGTAGACAGCAAAGACAACTTCGGTAATTCGAGCGGT
GCATCGTGCCCTCCGCCTCCGTTGTCGAAGGAAGCACGAAGCCGGGCCCG
GGAAGAAAAAAAAGAACCTGCCGCCATCAGCACTACTGGTTCTCCCAGTG
AGCCAGCACGACGTCCCGAGTATGGCGTCGCGTTTCCCGTGGCGATGCAC
GAGTCAGATCACCCTTTGCCAACCGGGCGCACCGGAGGTACCACACAACA
GCAGAGCGAGTTTTATTTTAACTTGGGGAGGCGTATGATGCTAGATAGCA
TCGAATAAAATTAAATGGAGGAGTTCTTCAATCTAGCCTACATGTTCCCA
TCGAAGGGGTAGACAGCAAAGACAACTTCGGTAATTCGAGCGGTGCATCG
TGCCCTCCGCCTCCGTTGTCGAAGGAAGCACGAAGCCGGGCCCGGGAAGA
AAAAAAAGAACCTGCCGCCATCAGCACTACTGGTTCTCCCAGTGAGCCAG
CACGACGTCCCGAGTATGGCGTCGCGTTTCCCGTGGCGATGCACGAGTCA
GATCACCCTTTGCCAACCGGGCGCACCGGAGGTACCACACAACAGCAGAG
CGAGTTTTATTTTAACTTGGGGAGGCGTATGATGCTAGATAGCATCGAAT
AA
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