mRNA_L-elsbetiae_contig16735.4545.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16735.4545.1
Unique NamemRNA_L-elsbetiae_contig16735.4545.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16735.4545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16735contigL-elsbetiae_contig16735:1411..2711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size667
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.544994-CDS-L-elsbetiae_contig16735:1410..20241622815695.544994-CDS-L-elsbetiae_contig16735:1410..2024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16735 1411..2024 +
1691683043.3454053-CDS-L-elsbetiae_contig16735:1410..20241691683043.3454053-CDS-L-elsbetiae_contig16735:1410..2024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16735 1411..2024 +
1622815695.558924-CDS-L-elsbetiae_contig16735:2658..27101622815695.558924-CDS-L-elsbetiae_contig16735:2658..2710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16735 2659..2710 +
1691683043.3545654-CDS-L-elsbetiae_contig16735:2658..27101691683043.3545654-CDS-L-elsbetiae_contig16735:2658..2710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16735 2659..2710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16735.4545.1prot_L-elsbetiae_contig16735.4545.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16735 1411..2710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16735.4545.1

>prot_L-elsbetiae_contig16735.4545.1 ID=prot_L-elsbetiae_contig16735.4545.1|Name=mRNA_L-elsbetiae_contig16735.4545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
VYSTFHSLRVCEIHWVLPSRCWCLSLSFVFCSRGGERPTIQFLRNKLGGD
STRDSSAETQRGRMRVPAVALGCGLALASAKESTIPQHAAAAAAAAASGR
LAVDHNPPPPPAGIVDGGRRRQHQRRRRRLTLTTGTHRYDGSATRSLAEG
SEAGPIPCFLAPLGRCSAGREESNSNSNTCSKLRHPRRWDERPLTVAVAM
VMRQSGDEGGGGGGGGGGGSSS
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mRNA from alignment at L-elsbetiae_contig16735:1411..2711+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16735.4545.1 ID=mRNA_L-elsbetiae_contig16735.4545.1|Name=mRNA_L-elsbetiae_contig16735.4545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1301bp|location=Sequence derived from alignment at L-elsbetiae_contig16735:1411..2711+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTACTCCACTTTCCACTCTCTGAGAGTGTGTGAAATACACTGGGTATT
GCCTTCTCGCTGTTGGTGCCTCTCTCTGTCCTTCGTATTTTGTAGCAGAG
GGGGAGAGCGTCCAACAATCCAATTTCTTCGAAATAAACTCGGTGGTGAC
AGCACCCGCGATTCAAGTGCAGAGACGCAGCGCGGGAGAATGAGGGTGCC
GGCGGTTGCCCTTGGTTGCGGGCTGGCCCTAGCTTCTGCAAAGGAAAGTA
CTATTCCGCAGCACGCAGCAGCGGCAGCAGCAGCAGCAGCAAGTGGCAGG
CTGGCGGTCGACCACAACCCACCGCCCCCTCCTGCCGGTATCGTCGACGG
TGGGCGGCGGCGACAACACCAGCGGAGGAGGCGACGATTGACATTGACAA
CAGGAACCCATCGTTACGACGGTAGTGCAACGAGGTCTCTAGCAGAAGGT
TCCGAAGCGGGCCCTATCCCGTGCTTCTTGGCTCCGCTGGGCCGATGCAG
TGCCGGACGAGAAGAGAGCAACAGCAACAGCAACACCTGCTCCAAGCTCC
GGCATCCACGCCGTTGGGATGAACGACCTTTGACAGTGGCAGTGGCAATG
GTGATGAGGCAAAGGTGGGTGTGGTCGGGGGTTTTCCAAGACACATAGGA
GATAGAGGCAGAAGTTCGGTGGGTCCGGAAGGAACTGCTGTACACATGAT
CAAGTGTTTACAGTAGAGACAGCCAGCCACCTAAGATAGTATCTGTCAAG
GTTCATATAAGACGTTGTCTATCTTGATAGTCTACATGCAATGACACGGA
CGGTGGCTCTACGTGCACCTTTGTGGAACAACCATCACTAGCCAGAGGGC
ATATTTATCTTGTCTAGCAAGGTGTACCAGACAACCCGGAACTCCTGCTG
TACCATCGCTGTACATTCCAATAATCCAAGCGCATGGAACACAGACTATG
GATGTATGTCAGGCCTCATGACACCCCAGCATGGAACGCTGCTCAACTCG
ACTTTGGGCCCGCTTTGCTTACAACCAGGGCTCTGTACAGCCGGTGCGGT
TAATCAGTTTGGGTGATATCGCGGAGCGGTGCGGTGCGGTTAACCGCTTG
TTAAAAAATCTCACGGTAACGGTGCGGTTTCCAGAACCGCACCGAACCGT
GAAAGAAAACCGCAACGTGCATAGCCCTGCTTACAACCACCCCCCCGTCG
TTCAACGCTGTTTCGTTGCTGTTTCGTTGCTGTTTTTGTTGGTGGCAGCG
GAGACGAAGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGTAGCAGCAGC
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16735:1411..2711+

>mRNA_L-elsbetiae_contig16735.4545.1 ID=mRNA_L-elsbetiae_contig16735.4545.1|Name=mRNA_L-elsbetiae_contig16735.4545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig16735:1411..2711+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTACTCCACTTTCCACTCTCTGAGAGTGTGTGAAATACACTGGGTATT
GCCTTCTCGCTGTTGGTGCCTCTCTCTGTCCTTCGTATTTTGTAGCAGAG
GGGGAGAGCGTCCAACAATCCAATTTCTTCGAAATAAACTCGGTGGTGAC
AGCACCCGCGATTCAAGTGCAGAGACGCAGCGCGGGAGAATGAGGGTGCC
GGCGGTTGCCCTTGGTTGCGGGCTGGCCCTAGCTTCTGCAAAGGAAAGTA
CTATTCCGCAGCACGCAGCAGCGGCAGCAGCAGCAGCAGCAAGTGGCAGG
CTGGCGGTCGACCACAACCCACCGCCCCCTCCTGCCGGTATCGTCGACGG
TGGGCGGCGGCGACAACACCAGCGGAGGAGGCGACGATTGACATTGACAA
CAGGAACCCATCGTTACGACGGTAGTGCAACGAGGTCTCTAGCAGAAGGT
TCCGAAGCGGGCCCTATCCCGTGCTTCTTGGCTCCGCTGGGCCGATGCAG
TGCCGGACGAGAAGAGAGCAACAGCAACAGCAACACCTGCTCCAAGCTCC
GGCATCCACGCCGTTGGGATGAACGACCTTTGACAGTGGCAGTGGCAATG
GTGATGAGGCAAAGGTTTACTCCACTTTCCACTCTCTGAGAGTGTGTGAA
ATACACTGGGTATTGCCTTCTCGCTGTTGGTGCCTCTCTCTGTCCTTCGT
ATTTTGTAGCAGAGGGGGAGAGCGTCCAACAATCCAATTTCTTCGAAATA
AACTCGGTGGTGACAGCACCCGCGATTCAAGTGCAGAGACGCAGCGCGGG
AGAATGAGGGTGCCGGCGGTTGCCCTTGGTTGCGGGCTGGCCCTAGCTTC
TGCAAAGGAAAGTACTATTCCGCAGCACGCAGCAGCGGCAGCAGCAGCAG
CAGCAAGTGGCAGGCTGGCGGTCGACCACAACCCACCGCCCCCTCCTGCC
GGTATCGTCGACGGTGGGCGGCGGCGACAACACCAGCGGAGGAGGCGACG
ATTGACATTGACAACAGGAACCCATCGTTACGACGGTAGTGCAACGAGGT
CTCTAGCAGAAGGTTCCGAAGCGGGCCCTATCCCGTGCTTCTTGGCTCCG
CTGGGCCGATGCAGTGCCGGACGAGAAGAGAGCAACAGCAACAGCAACAC
CTGCTCCAAGCTCCGGCATCCACGCCGTTGGGATGAACGACCTTTGACAG
TGGCAGTGGCAATGGTGATGAGGCAAAGCGGAGACGAAGGTGGTGGCGGC
GGCGGCGGCGGCGGCGGCGGTAGCAGCAGCCGGAGACGAAGGTGGTGGCG
GCGGCGGCGGCGGCGGCGGCGGTAGCAGCAGC
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