mRNA_L-elsbetiae_contig16723.4540.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16723.4540.1
Unique NamemRNA_L-elsbetiae_contig16723.4540.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Match: D7G3D7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D7_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 4.880e-37
Identity = 68/87 (78.16%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGN*KG-PRTGHREEQTLHGAVVAA 258
            MH FCGRGIGDEG+GQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGG  KG  RT     Q   G  +++
Sbjct:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGKGKGRQRTAETNSQRRSGCSLSS 87
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BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Match: A0A6H5JT55_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT55_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.140e-13
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSS 156
            MH FCGRGIG+EG GQQR CTDCQ+RT  G IGT +SPMEV+S  D+E++SS
Sbjct:   43 MHGFCGRGIGEEGFGQQRECTDCQRRTTTGKIGTGTSPMEVNSSSDNEDNSS 94
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BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Match: A0A6H5KEU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.130e-11
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 150
            MH FCGRGIG+EG+GQQR C+DCQK       G+SSSPMEVD+ ++ ++S
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQDS 92
[Close]
BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Match: A0A6H5L7T1_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.000e-11
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSE 144
            MH FCGRGIG+EG GQQR  T CQKRT  G IGT +SPMEVDS  D+E
Sbjct:    1 MHGFCGRGIGEEGFGQQRERTYCQKRTTSGKIGTGTSPMEVDSSGDNE 48
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BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Match: A0A6H5JYC6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.010e-10
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    1 MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSS--HPAGRKKPETGGN*KGP 207
            MH FCGRGIG+EG+GQQR C+DCQK       G+SSSPMEVD+ ++ ++S S   P   ++P  GG  K P
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGAQAGSSSSPMEVDAEENEQDSRSTTQPFRVEEPSVGGKGKRP 113
[Close]
BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Match: A0A6H5KEL4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.080e-10
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 150
            MH FCGRGIG EG+GQQR CT+CQK       G+ SSPMEVD  D+ E S
Sbjct:    1 MHAFCGRGIGKEGYGQQRKCTECQKTAPGSRTGSPSSPMEVDDDDEQEES 50
[Close]
BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Match: A0A6H5L8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A7_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.080e-9
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 150
            MH FCGRGIG+EG+GQQR C+DCQK       G+SSSPMEVD+ ++ ++S
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQDS 92
[Close]
BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Match: A0A6H5L464_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L464_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.840e-9
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEV 123
            MH FCGRGIG+EG+GQQR C+DCQK       G+SSSPMEV
Sbjct:    1 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEV 41
[Close]
BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Match: A0A6H5K408_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K408_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.540e-9
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEV 123
            MH FCGRGIG+EG+GQQR C+DCQK       G+SSSPMEV
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEV 83
[Close]
BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Match: A0A6H5KGD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.060e-9
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEV 123
            MH FCGRGIG+EG+GQQR C+DCQK       G+SSSPMEV
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEV 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16723.4540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G3D7_ECTSI4.880e-3778.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT55_9PHAE2.140e-1369.23HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KEU0_9PHAE4.130e-1160.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7T1_9PHAE5.000e-1170.83HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JYC6_9PHAE2.010e-1052.11DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KEL4_9PHAE7.080e-1062.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L8A7_9PHAE1.080e-960.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L464_9PHAE2.840e-968.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K408_9PHAE4.540e-968.29Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD7_9PHAE6.060e-968.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16723contigL-elsbetiae_contig16723:2031..3217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size329
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16723.4540.1prot_L-elsbetiae_contig16723.4540.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16723 2293..3217 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.2358599-UTR-L-elsbetiae_contig16723:2030..21541622815695.2358599-UTR-L-elsbetiae_contig16723:2030..2154Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16723 2031..2154 -
1691683043.220859-UTR-L-elsbetiae_contig16723:2030..21541691683043.220859-UTR-L-elsbetiae_contig16723:2030..2154Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16723 2031..2154 -
1622815695.2509806-UTR-L-elsbetiae_contig16723:2285..22921622815695.2509806-UTR-L-elsbetiae_contig16723:2285..2292Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16723 2286..2292 -
1691683043.2327957-UTR-L-elsbetiae_contig16723:2285..22921691683043.2327957-UTR-L-elsbetiae_contig16723:2285..2292Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16723 2286..2292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.2671907-CDS-L-elsbetiae_contig16723:2292..23411622815695.2671907-CDS-L-elsbetiae_contig16723:2292..2341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16723 2293..2341 -
1691683043.2423408-CDS-L-elsbetiae_contig16723:2292..23411691683043.2423408-CDS-L-elsbetiae_contig16723:2292..2341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16723 2293..2341 -
1622815695.284103-CDS-L-elsbetiae_contig16723:3068..32171622815695.284103-CDS-L-elsbetiae_contig16723:3068..3217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16723 3069..3217 -
1691683043.251415-CDS-L-elsbetiae_contig16723:3068..32171691683043.251415-CDS-L-elsbetiae_contig16723:3068..3217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16723 3069..3217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16723.4540.1

>prot_L-elsbetiae_contig16723.4540.1 ID=prot_L-elsbetiae_contig16723.4540.1|Name=mRNA_L-elsbetiae_contig16723.4540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
MHTFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS
SSHPAGRKKPETGGN*
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mRNA from alignment at L-elsbetiae_contig16723:2031..3217-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16723.4540.1 ID=mRNA_L-elsbetiae_contig16723.4540.1|Name=mRNA_L-elsbetiae_contig16723.4540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1187bp|location=Sequence derived from alignment at L-elsbetiae_contig16723:2031..3217- (Laminarionema elsbetiae ELsaHSoW15)
ATGCATACCTTCTGCGGGCGAGGCATCGGGGATGAAGGCCACGGGCAGCA
GCGAATGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCA
CCAGCAGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGG
TGATGAGCGTGAATCGCGCAGCAGTCAGCAGTAGCAGTCAGCAGCCAGCA
GCCCTCAACCGAACGAACACCATGCTGCTGCTGGGCATGAAAGCGACTCA
CGCGCCATGAACCACCACACGAAATATCACCGTTCCCACTCGAACATGAT
TTCTGCGTTCCTTTCTGTCAAACATGAGGAGTTCGGCACAACCTTGTGCG
GGTGTTTTTTTTTTCTCTCTGTGTGTGTATGTGTGTGTGTGTGTGCGTCT
GTATCTGTCTGGTGTGTGTGTGATACTGCTGCAAAGCAAAAACAAATTTC
GGCAAACACAAAAACAGTTCGCTGTCGCAGCTGTTGGGATGGGAGCAAAT
GACTCGCTGCGCTGCCGTACTCGTGCTCGCACTTCGGCGGTGATATGCAG
ACTGTCGTGCAGGATTCACACTTGAAAGCTCGCTTGAAAAATAGGCTATG
TACACAACTACCTGCTGTGCGATATGTACATGGTGCTCCCAAAAATCTGG
AATGCTTGTGTGCCTCTCTTGCCTCATTTCCATACGTACATGTACATGGA
TAAGCTGCTGCCAGCACAGATATGTGCTCTTTCCCTGGAAAATCAGCGCA
AGTTATATTTGGCGCGACTGCTGAACTAGTACCATGTGGATTCTCGCGTT
CCTCCGTCAGCACAAGTGCCGACAACCTCCCTTGACATCTCGACCTTCAC
TCGCCACTTTTTTTCCTTACGCCCAGCTCGTCGCACCCGGCCGGGCGCAA
GAAGCCAGAGACCGGAGGGAATTGAAAAGGGCGTCAACGTACCGCGGGGA
CAGACGGCGGAGGTGCCGCCGGGGCGAGCGGCGGAGGTACCGCGGGGGCG
GGCGGCGAAGGTGCCCCGGAGGGGGGCGCTGGTGCCGCCGCCAAAAAAGC
CAGGGTGCGCAAGCCCGGACCGGACACCGGGAAGAACAAACTCTCCACGG
CGCAGTGGTTGCAGCTTGTCAACGAGATCCGAGGTGGCGCTAAAAGAAAG
GCGGTTGCTGCAAAGTTCAACGTCGGCACATCATACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16723:2031..3217-

>mRNA_L-elsbetiae_contig16723.4540.1 ID=mRNA_L-elsbetiae_contig16723.4540.1|Name=mRNA_L-elsbetiae_contig16723.4540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig16723:2031..3217- (Laminarionema elsbetiae ELsaHSoW15)
ATGCATACCTTCTGCGGGCGAGGCATCGGGGATGAAGGCCACGGGCAGCA
GCGAATGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCA
CCAGCAGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGA
TGCATACCTTCTGCGGGCGAGGCATCGGGGATGAAGGCCACGGGCAGCAG
CGAATGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCAC
CAGCAGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGCT
CGTCGCACCCGGCCGGGCGCAAGAAGCCAGAGACCGGAGGGAATTGACTC
GTCGCACCCGGCCGGGCGCAAGAAGCCAGAGACCGGAGGGAATTGA
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