mRNA_L-elsbetiae_contig16722.4537.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16722.4537.1
Unique NamemRNA_L-elsbetiae_contig16722.4537.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Match: A0A6H5K8V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V8_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 4.740e-58
Identity = 105/121 (86.78%), Postives = 108/121 (89.26%), Query Frame = 2
Query:    2 MSEIMKNAEAKGEEGDVDEAQELFEQAEALQQTKAGLEAKALQ---------SAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESLLEER 337
            MSEIMKNAEAKGEEGDVDEAQELFEQAE LQ+TKA LEAKALQ         SAPLHL TSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLES+ +ER
Sbjct:  146 MSEIMKNAEAKGEEGDVDEAQELFEQAEELQRTKAELEAKALQDSIMEARAQSAPLHLATSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESIHKER 266          
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Match: A0A2G5CEI8_AQUCA (Uncharacterized protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CEI8_AQUCA)

HSP 1 Score: 103 bits (258), Expect = 5.890e-24
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 2
Query:    2 MSEIMKNAEAKGEEGDVDEAQELFEQAEALQQTKAGLEAKALQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESLLEEREA 343
            ++E +K AE  GE+G VDEAQ+  E+AEAL++  A  EA         L++S  TA ++   T QKLRVCDICGA LS++DS+ RLA+HFGGKLH+G++ IR KL  L EEREA
Sbjct:  213 INEKLKKAEDLGEQGMVDEAQKALEEAEALKKLGARQEAV--------LDSSKYTAADV-RITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLAELQEEREA 317          
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Match: UPI001FB19E3D (luc7-like protein n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB19E3D)

HSP 1 Score: 101 bits (252), Expect = 3.720e-23
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 2
Query:    2 MSEIMKNAEAKGEEGDVDEAQELFEQAEALQQTKAGLEAKALQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESLLEER 337
            ++E +K AE  GE+G VDEAQ+  E+AEAL++  A  E       P+H +TS  TA ++   T QKLRVCDICGA LS++DS+ RLA+HFGGKLH+G++ IR KL  L EER
Sbjct:  208 INERLKKAEDLGEQGMVDEAQKALEEAEALKKLAARQE-------PVH-DTSKYTAVDV-RITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELKEER 310          
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Match: A0A7S2V537_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V537_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.970e-23
Identity = 58/118 (49.15%), Postives = 72/118 (61.02%), Query Frame = 2
Query:    2 MSEIMKNAEAKGEEGDVDEAQELFEQAEALQQTKAGLEAKALQSAPLH--LNTSNPTAQEL-----GNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESLLEE 334
            +S+ MK  E  GEEGDVD AQEL E+ E L+Q K   + K ++ A     L       + L     G    QKLRVCD+CGA LSI+DS+ RLA+HFGGKLH+GFV IR KL  +  E
Sbjct:  119 ISDAMKEVEQAGEEGDVDRAQELMEKVEELKQQKIEAQTKLMREASGQPSLGGGGEGGESLVDSLSGREVNQKLRVCDVCGAFLSIYDSDRRLADHFGGKLHMGFVQIRQKLAEIKVE 236          
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Match: A0A2G9HVU1_9LAMI (Spliceosome subunit n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HVU1_9LAMI)

HSP 1 Score: 100 bits (249), Expect = 1.020e-22
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 2
Query:    2 MSEIMKNAEAKGEEGDVDEAQELFEQAEALQQTKAGLEAKALQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESLLEERE 340
            ++E +K AE  GE+G +DEAQ+  E+AEAL++  A  E       P+ +++S  TA ++   T QKLRVCDICGA LS++DS+ RLA+HFGGKLH+G++ IR KL  L EERE
Sbjct:  211 INEKLKKAEELGEQGKIDEAQKALEEAEALKKLPARQE-------PV-VDSSKYTAADV-RITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLADLQEERE 314          
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Match: A0A2P2LVH4_RHIMU (Uncharacterized protein MANES_12G003500 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LVH4_RHIMU)

HSP 1 Score: 96.3 bits (238), Expect = 1.210e-22
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 2
Query:    2 MSEIMKNAEAKGEEGDVDEAQELFEQAEALQQTKAGLEAKALQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESLLEERE 340
            ++E +K AE  GE+G VDEAQ+  E+AEAL++  A  E          L++S  TA ++   T QKLRVCDICGA LS++DS+ RLA+HFGGKLH+G++ IR KL  L  ++E
Sbjct:   71 INEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPP--------LDSSKYTAADV-RITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLTELQVQKE 174          
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Match: A0A0B0MSE8_GOSAR (Putative RNA-binding protein Luc7-like 1 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A0B0MSE8_GOSAR)

HSP 1 Score: 98.6 bits (244), Expect = 1.240e-22
Identity = 59/112 (52.68%), Postives = 79/112 (70.54%), Query Frame = 2
Query:    2 MSEIMKNAEAKGEEGDVDEAQELFEQAEALQQTKAGLEAKALQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESLLEER 337
            ++E +K AE  GE+G VDEAQ+  E+AEAL++  A  E       P+ L++S  TA ++   T QKLRVCDICGA LS++DS+ RLA+HFGGKLH+G++ IR KL  L EER
Sbjct:   75 INEKLKKAEDLGEKGMVDEAQKALEEAEALKKLPARQE-------PV-LDSSKYTAADV-RITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEER 177          
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Match: A0A6I9TKA9_SESIN (putative RNA-binding protein Luc7-like 1 isoform X1 n=3 Tax=Lamiales TaxID=4143 RepID=A0A6I9TKA9_SESIN)

HSP 1 Score: 99.8 bits (247), Expect = 2.080e-22
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 2
Query:    2 MSEIMKNAEAKGEEGDVDEAQELFEQAEALQQTKAGLEAKALQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESLLEERE 340
            ++E +K AE  GE+G VDEAQ+  E+AEAL++  A  E       P+ L++S  TA ++   T QKLRVCDICGA LS++DS+ RLA+HFGGKLH+G++ IR KL  L EER+
Sbjct:  211 INEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQE-------PV-LDSSKYTAADV-RITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLAELQEERD 314          
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Match: A0A830C1Q3_9LAMI (Luc7-like protein n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830C1Q3_9LAMI)

HSP 1 Score: 98.6 bits (244), Expect = 2.250e-22
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 2
Query:    2 MSEIMKNAEAKGEEGDVDEAQELFEQAEALQQTKAGLEAKALQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESLLEERE 340
            ++E +K AE  GE+G VDEAQ+  E+AEAL++  A  E       P+ L++S  TA ++   T QKLRVCDICGA LS++DS+ RLA+HFGGKLH+G++ IR KL  L EE++
Sbjct:  207 INEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQE-------PV-LDSSKYTAADV-RITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLAELQEEKD 310          
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Match: A0A2P2LVD9_RHIMU (Uncharacterized protein MANES_13G003600 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LVD9_RHIMU)

HSP 1 Score: 95.9 bits (237), Expect = 2.370e-22
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 2
Query:    2 MSEIMKNAEAKGEEGDVDEAQELFEQAEALQQTKAGLEAKALQSAPLHLNTSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLHIGFVDIRTKLESLLEER 337
            ++E +K AE  GE+G VDEAQ+  E+AEAL++  A  E          L++S  TA ++   T QKLRVCDICGA LS++DS+ RLA+HFGGKLH+G++ IR KL  L + R
Sbjct:    2 INEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPP--------LDSSKYTAADV-RITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLTELQDAR 104          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16722.4537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8V8_9PHAE4.740e-5886.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2G5CEI8_AQUCA5.890e-2453.51Uncharacterized protein n=2 Tax=Thalictroideae Tax... [more]
UPI001FB19E3D3.720e-2353.57luc7-like protein n=1 Tax=Impatiens glandulifera T... [more]
A0A7S2V537_9STRA4.970e-2349.15Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2G9HVU1_9LAMI1.020e-2251.33Spliceosome subunit n=1 Tax=Handroanthus impetigin... [more]
A0A2P2LVH4_RHIMU1.210e-2249.56Uncharacterized protein MANES_12G003500 n=2 Tax=Rh... [more]
A0A0B0MSE8_GOSAR1.240e-2252.68Putative RNA-binding protein Luc7-like 1 n=1 Tax=G... [more]
A0A6I9TKA9_SESIN2.080e-2252.21putative RNA-binding protein Luc7-like 1 isoform X... [more]
A0A830C1Q3_9LAMI2.250e-2251.33Luc7-like protein n=1 Tax=Phtheirospermum japonicu... [more]
A0A2P2LVD9_RHIMU2.370e-2250.00Uncharacterized protein MANES_13G003600 n=1 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16722contigL-elsbetiae_contig16722:1685..3425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLuc7-related
Ec32 orthologEc-26_003430.2
Exons3
Model size347
Cds size345
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16722.4537.1prot_L-elsbetiae_contig16722.4537.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16722 1685..3425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.0643764-CDS-L-elsbetiae_contig16722:1684..17621622815695.0643764-CDS-L-elsbetiae_contig16722:1684..1762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16722 1685..1762 -
1691683043.1229212-CDS-L-elsbetiae_contig16722:1684..17621691683043.1229212-CDS-L-elsbetiae_contig16722:1684..1762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16722 1685..1762 -
1622815695.0774286-CDS-L-elsbetiae_contig16722:2297..24341622815695.0774286-CDS-L-elsbetiae_contig16722:2297..2434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16722 2298..2434 -
1691683043.1392407-CDS-L-elsbetiae_contig16722:2297..24341691683043.1392407-CDS-L-elsbetiae_contig16722:2297..2434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16722 2298..2434 -
1622815695.0897357-CDS-L-elsbetiae_contig16722:3295..34251622815695.0897357-CDS-L-elsbetiae_contig16722:3295..3425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16722 3296..3425 -
1691683043.1502502-CDS-L-elsbetiae_contig16722:3295..34251691683043.1502502-CDS-L-elsbetiae_contig16722:3295..3425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16722 3296..3425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16722.4537.1

>prot_L-elsbetiae_contig16722.4537.1 ID=prot_L-elsbetiae_contig16722.4537.1|Name=mRNA_L-elsbetiae_contig16722.4537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
DERDHEERRGQRGGGGRGRGPGAVRAGGSAAADQGGAGGQGAAVGPSPPQ
HLQPHGPGAGQRHSAEAARVRHLRGAAVHLRLQRSLGRALWRQATHRVRG
HPHQAGEPPRGERG*
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mRNA from alignment at L-elsbetiae_contig16722:1685..3425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16722.4537.1 ID=mRNA_L-elsbetiae_contig16722.4537.1|Name=mRNA_L-elsbetiae_contig16722.4537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1741bp|location=Sequence derived from alignment at L-elsbetiae_contig16722:1685..3425- (Laminarionema elsbetiae ELsaHSoW15)
GATGAGCGAGATCATGAAGAACGCCGAGGCCAAAGGGGAGGAGGGGGACG TGGACGAGGCCCAGGAGCTGTTCGAGCAGGCGGAAGCGCTGCAGCAGACC AAGGCGGGGCTGGAGGCCAAGGCGCTGCAGGTGACGAAAGAGAGGGGAGG AGGGGGGAAGGAAGGGGAAGCAAGGGACGAAGTAAGAGAGGGAGGGAAGG GGACATAAGAGAGGGAGGGGGGGAGAAAGAGAGGAGGAGAGAGGGGGAGG GGGGGGGGGGGGGGGTCTCGAGGGGGGGCGAAATGTTTCTGAGGGCCCCG GGAAAAGAAATACCCTCTCCGGGGTTGTTATAGTGGANNNNNNNNGGGGG GGGGGGGGGGGAGGGAGGGGGGGGAGGGAGGAGGAGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGATCTCGAAGGCGGACTAAATGTGTCTGAAGGCC TCAGGAAAAGCAATACCCTCTCGAGGATTGTTATAGTGTAAGTGCGCACA GTTTTGGATGGCGTCTCAACACAGCTGCGCTTTGGTTTGGTTTGGGCTGC CTTCAGCTCGAACAAGTCACAAGCCCGCCTACGTTGACGACGATCTACAG CAGCAGCTCATTGTTTTTAGCATACATTTATGGTGTCTTACGTGCGATGG TGCATATCAATGAGTCATCACCGCAGTCACACCCCGAAGAACATCAACAC TCGGTACATGGGAACATCACGCAGATTGATCTTGGTGTACCTTTTGTGTC TTTGCGTTCTCTCTCGCTCTCTCTCTCTCTGGCTGTGTCTGACTCTCTCT GACTCTCTCTGACTCTCTCTGACTCTCTCTTTCTCTCCCTCTATCTCCGT CTCTCTCTCCGTTTCTCTCTCCCCCTATATCTCCCCATATCTCCGTTCCT TTCGTTGGCTGCAGCAAAGCATCATGGACGCCAGGGCGCAGTCGGCCCCT CTCCACCTCAACACCTCCAACCCCACGGCCCAGGAGCTGGGCAACGCCAC TCAGCAGAAGCTGCGCGTGTGCGACATCTGCGGGGCGCTGCTGTCCATCT TCGACTCCAACGATCGCTTGGCCGAGCAGTGAGTCACCGGGCAAACTGCA AATTGATTACAAAAGCAGCAAGGATGGGTGGCGCTCGACGGGTCCAGGTT TTGCGAAGGCACCGGCCCAGCCGGCCCCAAGCTAACTAGTGTGCCGGGGC GTGCGCCTGTCAATTGTTTCGTCCTCTTTTTTCCAGACGAAACCTAATCT TGAGTACAATCAGCACACCTCTCTCTTGTCTTTCGTTGTTCGCGCCACTA TAGAGTAAAATCGCCAATTAAGAGACACCTGCCTATTAAAGAGACACTGG TGGGCGATTTGCTCTATCTCGCCTGTGAATGCTCTGATCGGCACGCCGAA GTGCTCAAACGAAAGCTAACGCCAGGCTGCCAAATTATAAAAAAAAACGA AGGGTCTCCGCGGATTGTGTGCGGAGATATGGCAATTTGAAAAAGTGTGT CTCTTAATAGGCAGGTGTCTCTTAGTTGGCGGTTTCACTCTATGTACCCA CACAACACGCGCACCGTTCTGCATTGGGTTCCTCCCCTCCTTCGCCTTGG CCTTCGTCTTCAGCTTTGGCGGCAAGCTACACATCGGGTTCGTGGACATC CGCACCAAGCTGGAGAGCCTCCTCGAGGAGAGAGAGGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16722:1685..3425-

>mRNA_L-elsbetiae_contig16722.4537.1 ID=mRNA_L-elsbetiae_contig16722.4537.1|Name=mRNA_L-elsbetiae_contig16722.4537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig16722:1685..3425- (Laminarionema elsbetiae ELsaHSoW15)
GATGAGCGAGATCATGAAGAACGCCGAGGCCAAAGGGGAGGAGGGGGACG
TGGACGAGGCCCAGGAGCTGTTCGAGCAGGCGGAAGCGCTGCAGCAGACC
AAGGCGGGGCTGGAGGCCAAGGCGCTGCAGGATGAGCGAGATCATGAAGA
ACGCCGAGGCCAAAGGGGAGGAGGGGGACGTGGACGAGGCCCAGGAGCTG
TTCGAGCAGGCGGAAGCGCTGCAGCAGACCAAGGCGGGGCTGGAGGCCAA
GGCGCTGCAGTCGGCCCCTCTCCACCTCAACACCTCCAACCCCACGGCCC
AGGAGCTGGGCAACGCCACTCAGCAGAAGCTGCGCGTGTGCGACATCTGC
GGGGCGCTGCTGTCCATCTTCGACTCCAACGATCGCTTGGCCGAGCATCG
GCCCCTCTCCACCTCAACACCTCCAACCCCACGGCCCAGGAGCTGGGCAA
CGCCACTCAGCAGAAGCTGCGCGTGTGCGACATCTGCGGGGCGCTGCTGT
CCATCTTCGACTCCAACGATCGCTTGGCCGAGCACTTTGGCGGCAAGCTA
CACATCGGGTTCGTGGACATCCGCACCAAGCTGGAGAGCCTCCTCGAGGA
GAGAGAGGCTAGCTTTGGCGGCAAGCTACACATCGGGTTCGTGGACATCC
GCACCAAGCTGGAGAGCCTCCTCGAGGAGAGAGAGGCTAG
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