mRNA_L-elsbetiae_contig16721.4536.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16721.4536.1
Unique NamemRNA_L-elsbetiae_contig16721.4536.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16721.4536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16721contigL-elsbetiae_contig16721:2352..2703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.0319698-CDS-L-elsbetiae_contig16721:2351..27021622815695.0319698-CDS-L-elsbetiae_contig16721:2351..2702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16721 2352..2702 +
1691683043.1081653-CDS-L-elsbetiae_contig16721:2351..27021691683043.1081653-CDS-L-elsbetiae_contig16721:2351..2702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16721 2352..2702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16721.4536.1prot_L-elsbetiae_contig16721.4536.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16721 2352..2702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16721.4536.1

>prot_L-elsbetiae_contig16721.4536.1 ID=prot_L-elsbetiae_contig16721.4536.1|Name=mRNA_L-elsbetiae_contig16721.4536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
GRREYRAGIAQREPMESLRLAPSFDLNSGENRAARPFFSNISIAQPAGTA
PSTATSGATRLCTSSTRTSAIGTAAVTQMTSSPEFEFASFFAEDDEDGPT
PPPASSTMAPPPAAVAA
back to top

mRNA from alignment at L-elsbetiae_contig16721:2352..2703+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16721.4536.1 ID=mRNA_L-elsbetiae_contig16721.4536.1|Name=mRNA_L-elsbetiae_contig16721.4536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=352bp|location=Sequence derived from alignment at L-elsbetiae_contig16721:2352..2703+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCGAAGAGAGTATCGGGCAGGCATAGCCCAGCGAGAGCCGATGGAATC
ATTACGGCTGGCCCCGTCCTTTGACTTGAACTCTGGAGAAAACCGAGCAG
CACGTCCCTTTTTCTCAAACATCAGTATCGCACAACCCGCTGGCACTGCA
CCGTCAACTGCAACATCGGGAGCAACACGGCTATGCACCTCTTCCACCAG
GACCAGCGCTATCGGCACCGCGGCCGTTACTCAAATGACGTCCTCGCCGG
AGTTTGAATTCGCTTCATTCTTTGCGGAGGACGACGAGGATGGGCCAACA
CCCCCCCCTGCTAGCTCTACCATGGCGCCGCCACCGGCAGCTGTAGCTGC
GG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16721:2352..2703+

>mRNA_L-elsbetiae_contig16721.4536.1 ID=mRNA_L-elsbetiae_contig16721.4536.1|Name=mRNA_L-elsbetiae_contig16721.4536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig16721:2352..2703+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCGAAGAGAGTATCGGGCAGGCATAGCCCAGCGAGAGCCGATGGAATC
ATTACGGCTGGCCCCGTCCTTTGACTTGAACTCTGGAGAAAACCGAGCAG
CACGTCCCTTTTTCTCAAACATCAGTATCGCACAACCCGCTGGCACTGCA
CCGTCAACTGCAACATCGGGAGCAACACGGCTATGCACCTCTTCCACCAG
GACCAGCGCTATCGGCACCGCGGCCGTTACTCAAATGACGTCCTCGCCGG
AGTTTGAATTCGCTTCATTCTTTGCGGAGGACGACGAGGATGGGCCAACA
CCCCCCCCTGCTAGCTCTACCATGGCGCCGCCACCGGCAGCTGTAGCTGC
GGGGCGAAGAGAGTATCGGGCAGGCATAGCCCAGCGAGAGCCGATGGAAT
CATTACGGCTGGCCCCGTCCTTTGACTTGAACTCTGGAGAAAACCGAGCA
GCACGTCCCTTTTTCTCAAACATCAGTATCGCACAACCCGCTGGCACTGC
ACCGTCAACTGCAACATCGGGAGCAACACGGCTATGCACCTCTTCCACCA
GGACCAGCGCTATCGGCACCGCGGCCGTTACTCAAATGACGTCCTCGCCG
GAGTTTGAATTCGCTTCATTCTTTGCGGAGGACGACGAGGATGGGCCAAC
ACCCCCCCCTGCTAGCTCTACCATGGCGCCGCCACCGGCAGCTGTAGCTG
CG
back to top