mRNA_L-elsbetiae_contig16716.4535.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16716.4535.1
Unique NamemRNA_L-elsbetiae_contig16716.4535.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: D7G4T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T8_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.460e-39
Identity = 73/85 (85.88%), Postives = 81/85 (95.29%), Query Frame = 3
Query:   18 QELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQV 272
            +EL DD EYAEIK DVVEEC+QYGKVKSAEVPRPE+GKEVLG+GEIFVEFEDVAGATKGR+ALAGRKFGGKAV+AT+YP DLFQ+
Sbjct:  963 EELADDTEYAEIKGDVVEECEQYGKVKSAEVPRPEDGKEVLGLGEIFVEFEDVAGATKGRNALAGRKFGGKAVKATYYPLDLFQM 1047          
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A8K1C5Z4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5Z4_PYTOL)

HSP 1 Score: 90.5 bits (223), Expect = 3.250e-19
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 3
Query:    3 NLWLHQELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLF 266
            N+    EL DD EYA++K DV EEC+++G V + E+PRP++G++V GVG I+V+FED + +     AL+GRKFGGK V+ T++P   F
Sbjct:  622 NMVSEDELRDDEEYADLKEDVEEECKRFGLVVAMEIPRPKDGEDVPGVGNIYVQFEDASQSGAALKALSGRKFGGKIVQVTYFPMTKF 709          
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A024TKE3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKE3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.840e-19
Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = 3
Query:   21 ELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQVR 275
            ELEDD E+A++K D+ EEC ++GKV + EVPRP+ G+ +LGVG++FV FE V GA K   AL GRKFGG  V+  +     F+ +
Sbjct:  451 ELEDDDEFADLKEDIEEECNKFGKVVALEVPRPKTGETILGVGKVFVRFESVEGAEKATKALTGRKFGGNIVQVEYMSLAKFETQ 535          
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A9S9L1_PHYPA (Splicing factor U2af large subunit (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S9L1_PHYPA)

HSP 1 Score: 87.4 bits (215), Expect = 3.600e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 3
Query:   21 ELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQV 272
            EL+DD EY +I  D+ EEC +YG +    +PRP +G++V GVG++FVE+ D AGA K + +L GR+FGG +V A +YP + F +
Sbjct:  415 ELKDDEEYQDILEDMKEECGKYGNLVKLVIPRPRDGEDVPGVGKVFVEYSDTAGAAKAKASLHGRRFGGHSVVAVYYPAEKFSI 498          
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A6G0WM79_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM79_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.410e-18
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3
Query:    3 NLWLHQELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQVR 275
            N+    ELEDD E+A++K D+ EEC ++GKV + E+PRP   + VLGVG++FV FED++GA     AL GRKFGG  V  ++     F+ +
Sbjct:  275 NMVQASELEDDDEFADLKEDIEEECNKFGKVVALEIPRPNGNETVLGVGKVFVRFEDISGAQAAIKALKGRKFGGNIVEVSYMSLAKFETQ 365          
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A2K1JH19_PHYPA (Splicing factor U2af large subunit n=12 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JH19_PHYPA)

HSP 1 Score: 86.7 bits (213), Expect = 7.110e-18
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 3
Query:   21 ELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLF 266
            EL+DD EY +I  D+ EEC +YG +    +PRP +G++V GVG++FVE+ D AGA K + +L GR+FGG +V A +YP + F
Sbjct:  474 ELKDDEEYQDILEDMKEECGKYGNLLRVVIPRPRDGEDVPGVGKVFVEYSDTAGAAKAKASLHGRRFGGHSVVAVYYPEEKF 555          
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A7S0H2C3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0H2C3_MICPS)

HSP 1 Score: 81.3 bits (199), Expect = 7.820e-18
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 3
Query:   21 ELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEE-GKE--VLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQVR 275
            EL DD E+A+I+ DV +EC ++G V    +PRP   G E  V G+G+ FV +E VAGAT  RDAL GRKFGGK V A F   D F+ R
Sbjct:   37 ELRDDGEFADIEEDVRDECGKFGSVVEVAIPRPRPPGDETPVAGLGKAFVRYETVAGATAARDALHGRKFGGKVVNADFIDVDAFERR 124          
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A485KWN6_9STRA (Aste57867_12612 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWN6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.640e-18
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3
Query:    3 NLWLHQELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQVR 275
            N+    ELEDD E+A++K D+ EEC ++GKV + E+PRP   + VLG+G++FV FEDV+GA     AL GRKFGG  V  ++     F+ +
Sbjct:  454 NMVQASELEDDEEFADLKEDIEEECNKFGKVVALEIPRPNGEEAVLGIGKVFVRFEDVSGAEAATKALTGRKFGGNIVDVSYMSLAKFETQ 544          
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: W4G670_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G670_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.790e-17
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3
Query:    3 NLWLHQELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQVR 275
            N+    EL DD E+A++K D+ EEC ++GKV + E+PRP+ G+ VLGVG++FV F+ VAGA     AL GRKFGG  V+  +     F+ +
Sbjct:  443 NMVQPSELADDDEFADLKEDIEEECNKFGKVVALEIPRPKAGETVLGVGKVFVRFDAVAGAQAATKALTGRKFGGNIVQVAYLSLAKFETQ 533          
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A1V9YMP3_9STRA (Splicing factor U2af large subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMP3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.310e-17
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 3
Query:    3 NLWLHQELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQ 269
            N+    ELEDD+E+A++K D+ EEC ++GKV++  +PRP +G  + GVG++FV FE+VAGA     AL GRKFGG  V  ++   + F+
Sbjct:  432 NMVQESELEDDSEFADLKLDIDEECNKFGKVEALVIPRPSDG--IPGVGKVFVRFENVAGAVAATKALTGRKFGGNVVAVSYMSVEAFE 518          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4T8_ECTSI3.460e-3985.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C5Z4_PYTOL3.250e-1948.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TKE3_9STRA7.840e-1950.59Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A9S9L1_PHYPA3.600e-1847.62Splicing factor U2af large subunit (Fragment) n=1 ... [more]
A0A6G0WM79_9STRA5.410e-1846.15Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2K1JH19_PHYPA7.110e-1848.78Splicing factor U2af large subunit n=12 Tax=Physco... [more]
A0A7S0H2C3_MICPS7.820e-1852.27Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A485KWN6_9STRA9.640e-1846.15Aste57867_12612 protein n=1 Tax=Aphanomyces stella... [more]
W4G670_9STRA1.790e-1746.15Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A1V9YMP3_9STRA3.310e-1746.07Splicing factor U2af large subunit n=1 Tax=Achlya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16716contigL-elsbetiae_contig16716:212..1222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.979735-CDS-L-elsbetiae_contig16716:213..3921622815694.979735-CDS-L-elsbetiae_contig16716:213..392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16716 214..392 -
1691683043.0813048-CDS-L-elsbetiae_contig16716:213..3921691683043.0813048-CDS-L-elsbetiae_contig16716:213..392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16716 214..392 -
1622815694.9925637-CDS-L-elsbetiae_contig16716:1125..12221622815694.9925637-CDS-L-elsbetiae_contig16716:1125..1222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16716 1126..1222 -
1691683043.092543-CDS-L-elsbetiae_contig16716:1125..12221691683043.092543-CDS-L-elsbetiae_contig16716:1125..1222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16716 1126..1222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16716.4535.1prot_L-elsbetiae_contig16716.4535.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16716 214..1222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16716.4535.1

>prot_L-elsbetiae_contig16716.4535.1 ID=prot_L-elsbetiae_contig16716.4535.1|Name=mRNA_L-elsbetiae_contig16716.4535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
GIYGFTRSLKTTRSMQRSRPTSSRNASSTEKSRARKCPGRRRVRRFSASA
RSSWSSRTSQGRRRGGTPWLAGSSEAKPSGPRSTRTISSRFV
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mRNA from alignment at L-elsbetiae_contig16716:212..1222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16716.4535.1 ID=mRNA_L-elsbetiae_contig16716.4535.1|Name=mRNA_L-elsbetiae_contig16716.4535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1011bp|location=Sequence derived from alignment at L-elsbetiae_contig16716:212..1222- (Laminarionema elsbetiae ELsaHSoW15)
GGAATCTATGGCTTCACCAGGAGCTTGAAGACGACGCGGAGTATGCAGAG ATCAAGACCGACGTCGTCGAGGAATGCCAGCAGTACGGAAAAGTCAAGTG AGTGCCCCCTCCCTCTAAGCCGCCACGGAACACGATGAATGAGTACTTTG GTCGTGTTGGTGTTCTTGGCAGACGTAGGTTGGGTTCTTGGCAGGCGTTG TGACAAGTGCTCTACGTGTGCCGCCAGTGCCTAAGTAGTCGCCCTGCCTC AAGCCAGCAACCAATGCTACACCCGGGGGTGGATGGCGTGCCTTCGTGCT CCTGTCACCCCACCGCAAGCCAGCAACCAAATGCCAGCGCCGGGCCTGTT CATGCGCTCGCACCCGAGCCCACCCCAACTTGCGGAGACGACCCGTGCGC GCGCGAGCGATTCGTTTGGCTTTTTTGTTTTTCGTTTTTCTTGTTTTTCG TTTCGTTTTTTTTTTTTCTTTGTCCGTGCCGTGTTTCTCTTGGCACTAGC GAGGAGATCGTCTTGCCTTAGGCTCGCTCTCGTTCTCCGTATCTCGCGTG TATGTAGCGAGGAGGCGTTTCACACGCAGAGCGACACACTTTCTGATCGC GGCGTTTTTGCTGTTGTTTTCGTGTGTATTTATGTAGATGGCCGTTTCAT GGATCCTTGTGGGTCATGAATGACCGTTTTCGTAAGTTTCATAGATGACC GTTTCATGGATGCTTGTGGGGCATGAGTGACCGTTTCGTAACATGACCGT GCCATAAATAAACGAACGAAGGAGACAGAAACATGACCGTGCCATGAACA ACGGTTTCGCAATGGACCGTTCCGCATCAGGAGCGCGGAAGTGCCCCGGC CGGAGGAGGGTAAGGAGGTTCTCGGCGTCGGCGAGATCTTCGTGGAGTTC GAGGACGTCGCAGGGGCGACGAAGGGGAGGGACGCCCTGGCTGGCAGGAA GTTCGGAGGCAAAGCCGTCAGGGCCACGTTCTACCCGCACGATCTCTTCC AGGTTCGTCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16716:212..1222-

>mRNA_L-elsbetiae_contig16716.4535.1 ID=mRNA_L-elsbetiae_contig16716.4535.1|Name=mRNA_L-elsbetiae_contig16716.4535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig16716:212..1222- (Laminarionema elsbetiae ELsaHSoW15)
GGAATCTATGGCTTCACCAGGAGCTTGAAGACGACGCGGAGTATGCAGAG
ATCAAGACCGACGTCGTCGAGGAATGCCAGCAGTACGGAAAAGTCAAGGA
ATCTATGGCTTCACCAGGAGCTTGAAGACGACGCGGAGTATGCAGAGATC
AAGACCGACGTCGTCGAGGAATGCCAGCAGTACGGAAAAGTCAAGAGCGC
GGAAGTGCCCCGGCCGGAGGAGGGTAAGGAGGTTCTCGGCGTCGGCGAGA
TCTTCGTGGAGTTCGAGGACGTCGCAGGGGCGACGAAGGGGAGGGACGCC
CTGGCTGGCAGGAAGTTCGGAGGCAAAGCCGTCAGGGCCACGTTCTACCC
GCACGATCTCTTCCAGGTTCGTCGAGCGCGGAAGTGCCCCGGCCGGAGGA
GGGTAAGGAGGTTCTCGGCGTCGGCGAGATCTTCGTGGAGTTCGAGGACG
TCGCAGGGGCGACGAAGGGGAGGGACGCCCTGGCTGGCAGGAAGTTCGGA
GGCAAAGCCGTCAGGGCCACGTTCTACCCGCACGATCTCTTCCAGGTTCG
TC
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