prot_L-elsbetiae_contig167.4519.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig167.4519.1
Unique Name	prot_L-elsbetiae_contig167.4519.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	200

Homology

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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: D8LI70_ECTSI (Nuclear cap-binding protein subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI70_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 1.690e-112
Identity = 182/200 (91.00%), Postives = 185/200 (92.50%), Query Frame = 0

Query:    1 MTEMLDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATNDPARGGLGGLALAEENGQHAPQGGGAG-DYYGRGXXXXXXXXXXXXXXPNKRPRVDWDARDRR 199
            MTEMLDFGWSERPYWDRKNWSSLE+YKEALK SSTLYVGNLSFYTQESQIYALF+QVG VRRVIMGLDRVKKSPCGFCFVEYT HSDTLMAITCLD TALDERIIKVGIDPGFKQGRQYGRGMSGGQ VRDEARATNDPARGG+GGLALAE NGQ APQGGG G DYYG    XXXXXXXXXXX  NKRPRVDWDARDRR
Sbjct:    1 MTEMLDFGWSERPYWDRKNWSSLEAYKEALKKSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQ-VRDEARATNDPARGGMGGLALAEMNGQLAPQGGGGGGDYYGH---XXXXXXXXXXXRANKRPRVDWDARDRR 196

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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: F0WMQ1_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMQ1_9STRA)

HSP 1 Score: 161 bits (407), Expect = 5.230e-46
Identity = 80/138 (57.97%), Postives = 101/138 (73.19%), Query Frame = 0

Query:   10 SERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATN--DPARGGLG 145
            ++R YWDRK + SLE  + A+K SSTLY+GNLSFYT E+Q+  LF +VG ++RVIMGLDR KK+PCGFCFVEY  H++ L     L  T LD R+I+  +D GF QGRQ+GRG SGGQ VRD+ R+ +  DP RGG G
Sbjct:   19 NQRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLSGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQ-VRDDRRSKDEYDPGRGGFG 155

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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A024GN20_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GN20_9STRA)

HSP 1 Score: 160 bits (405), Expect = 9.620e-46
Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 0

Query:   11 ERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATN--DPARGGLG 145
            +R YWDRK + SLE  + A+K SSTLY+GNLSFYT E+Q+  LF +VG ++RVIMGLDR KK+PCGFCFVEY  H++ L     L  T LD R+I+  +D GF QGRQ+GRG SGGQ VRD+ R+ +  DP RGG G
Sbjct:   20 QRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLTGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQ-VRDDRRSKDEYDPGRGGFG 155

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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A1W0A133_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A133_9STRA)

HSP 1 Score: 159 bits (403), Expect = 9.980e-46
Identity = 80/140 (57.14%), Postives = 103/140 (73.57%), Query Frame = 0

Query:    8 GWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLG 145
            G  ++ YWDR+ ++SLE  +EA+K SSTLYVGNLSF+T E+QIY LF  VGPVR VIMGLDR+KK+PCGFCFVEY            + +T LD+R+I+  +D GF++GRQYGRG +GGQ VRD+ R+ +D  P RGG G
Sbjct:   12 GPKKKEYWDRQTYASLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRIKKTPCGFCFVEYFNKDHAQACANFISSTKLDQRVIRCELDGGFREGRQYGRGTTGGQ-VRDDRRSKDDYDPGRGGYG 150

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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A225UYF8_9STRA (Nuclear cap-binding protein subunit 2 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A225UYF8_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.770e-45
Identity = 84/156 (53.85%), Postives = 108/156 (69.23%), Query Frame = 0

Query:    3 EMLDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLGGLALAEENGQH 156
            + L  G S+R YWDRK +SS    + A+  SSTLYVGNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+ HS+       L  T LD R+++  +D GF++GRQ+GRG+SGGQ VRD+ R+ +D    RGG G    A  +G H
Sbjct:   13 QRLARGPSQRQYWDRKTFSSFAEQQRAMTRSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEYSTHSEAEACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQ-VRDDRRSKDDYDAGRGGYGRGDDATADGHH 167

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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A484EHH4_BRELC (Nuclear cap-binding protein subunit 2 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHH4_BRELC)

HSP 1 Score: 157 bits (398), Expect = 5.190e-45
Identity = 82/154 (53.25%), Postives = 109/154 (70.78%), Query Frame = 0

Query:    5 LDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLGGLALAEENGQH 156
            L  G S+R YWDRK ++S    + A++ SSTLY+GNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+KH++       L  T LD R+++  +D GF++GRQ+GRG+SGGQ VRD+ R+ +D    RGG G    A  +G H
Sbjct:   15 LQRGPSQRQYWDRKTFTSFAEQQRAMEQSSTLYIGNLSFFTSEAQIYELFSRVGFVKRVIMGLDRFKKTPCGFCFVEYSKHTEADACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQ-VRDDRRSKDDYDAGRGGYGRGDDATADGHH 167

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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A0N7L479_PLAHL (Nuclear cap-binding protein subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L479_PLAHL)

HSP 1 Score: 158 bits (399), Expect = 5.800e-45
Identity = 80/143 (55.94%), Postives = 106/143 (74.13%), Query Frame = 0

Query:    5 LDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLG 145
            L+ G S+R YWDRK +SS +  + +++ SSTLYVGNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+K+ +       L  T LD R+++  +D GF++GRQYGRG+SGGQ VRD+ R+ +D    RGG G
Sbjct:   15 LERGPSQRQYWDRKTYSSFDEQQRSIERSSTLYVGNLSFFTSEAQIYELFSRVGYVKRVIMGLDRFKKTPCGFCFVEYSKNVEAKACAQFLSETKLDNRVVRCEMDGGFREGRQYGRGLSGGQ-VRDDRRSKDDYDAGRGGYG 156

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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A8K1CR96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR96_PYTOL)

HSP 1 Score: 157 bits (398), Expect = 6.720e-45
Identity = 79/145 (54.48%), Postives = 103/145 (71.03%), Query Frame = 0

Query:    3 EMLDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLG 145
            E +  G  +R YWDRK ++S E  + A+  S+TLY+GNLSF+T E QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY  H + +     ++ T LD R+I+  +D GFK+GRQ+GRG SGGQ VRD+ R+ +D  P RGG G
Sbjct:   13 ERVARGQQQRKYWDRKTYTSYEEQQRAIASSATLYIGNLSFFTSEVQIYELFSRVGNVKRVIMGLDRFKKTPCGFCFVEYNTHEEAVACANFVNETKLDNRVIRCEMDGGFKEGRQFGRGASGGQ-VRDDRRSRDDYDPGRGGYG 156

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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A067BW87_SAPPC (Nuclear cap-binding protein subunit 2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BW87_SAPPC)

HSP 1 Score: 157 bits (398), Expect = 7.750e-45
Identity = 80/140 (57.14%), Postives = 102/140 (72.86%), Query Frame = 0

Query:    8 GWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLG 145
            G  ++ YWDR+ ++SLE  +EA+K SSTLYVGNLSF+T E+QIY LF  VGPVR VIMGLDR+KK+PCGFCFVEY            +  T LD+R+I+  +D GF++GRQYGRG +GGQ VRD+ R+ +D  P RGG G
Sbjct:   12 GPKKKEYWDRQTYTSLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRLKKTPCGFCFVEYFNKEHAQACSNFVSGTKLDQRVIRCELDGGFREGRQYGRGTTGGQ-VRDDRRSKDDYDPGRGGYG 150

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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: W2Q5Q2_PHYPN (Nuclear cap-binding protein subunit 2 n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q5Q2_PHYPN)

HSP 1 Score: 157 bits (398), Expect = 9.180e-45
Identity = 83/156 (53.21%), Postives = 109/156 (69.87%), Query Frame = 0

Query:    3 EMLDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLGGLALAEENGQH 156
            + L  G S+R YWDRK +SS    + A++ SSTLYVGNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+ H++       L  T LD R+++  +D GF++GRQ+GRG+SGGQ VRD+ R+ +D    RGG G    A  +G H
Sbjct:   13 QRLARGPSQRQYWDRKTFSSFAEQQRAMERSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEYSTHAEAEACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQ-VRDDRRSKDDYDAGRGGYGRGDDATADGHH 167

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LI70_ECTSI	1.690e-112	91.00	Nuclear cap-binding protein subunit 2 n=2 Tax=Ecto...	[more]
F0WMQ1_9STRA	5.230e-46	57.97	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]
A0A024GN20_9STRA	9.620e-46	58.39	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]
A0A1W0A133_9STRA	9.980e-46	57.14	Nuclear cap-binding protein subunit 2 n=1 Tax=Thra...	[more]
A0A225UYF8_9STRA	3.770e-45	53.85	Nuclear cap-binding protein subunit 2 n=2 Tax=Pero...	[more]
A0A484EHH4_BRELC	5.190e-45	53.25	Nuclear cap-binding protein subunit 2 n=1 Tax=Brem...	[more]
A0A0N7L479_PLAHL	5.800e-45	55.94	Nuclear cap-binding protein subunit 2 n=1 Tax=Plas...	[more]
A0A8K1CR96_PYTOL	6.720e-45	54.48	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A067BW87_SAPPC	7.750e-45	57.14	Nuclear cap-binding protein subunit 2 n=2 Tax=Sapr...	[more]
W2Q5Q2_PHYPN	9.180e-45	53.21	Nuclear cap-binding protein subunit 2 n=8 Tax=Phyt...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 7.4E-18 score: 75.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..105 e-value: 1.5E-14 score: 53.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 13.481
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 11..120 e-value: 3.1E-21 score: 77.6
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 12..155
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 33..131

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig167	contig	L-elsbetiae_contig167:46274..48323 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig167.4519.1	mRNA_L-elsbetiae_contig167.4519.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig167 46003..48323 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig167.4519.1 ID=prot_L-elsbetiae_contig167.4519.1|Name=mRNA_L-elsbetiae_contig167.4519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=200bp
MTEMLDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQI
YALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATAL
DERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATNDPARGGLGGLALA
EENGQHAPQGGGAGDYYGRGGGGGGDYYGGGGGGPNKRPRVDWDARDRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR027157	NCBP2
IPR035979	RBD_domain_sf