mRNA_L-elsbetiae_contig167.4519.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig167.4519.1
Unique NamemRNA_L-elsbetiae_contig167.4519.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: D8LI70_ECTSI (Nuclear cap-binding protein subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI70_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 2.730e-111
Identity = 182/200 (91.00%), Postives = 185/200 (92.50%), Query Frame = 2 
Query:  272 MTEMLDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATNDPARGGLGGLALAEENGQHAPQGGGAG-DYYGRGXXXXXXXXXXXXXXPNKRPRVDWDARDRR 868
            MTEMLDFGWSERPYWDRKNWSSLE+YKEALK SSTLYVGNLSFYTQESQIYALF+QVG VRRVIMGLDRVKKSPCGFCFVEYT HSDTLMAITCLD TALDERIIKVGIDPGFKQGRQYGRGMSGGQ VRDEARATNDPARGG+GGLALAE NGQ APQGGG G DYYG    XXXXXXXXXXX  NKRPRVDWDARDRR
Sbjct:    1 MTEMLDFGWSERPYWDRKNWSSLEAYKEALKKSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQ-VRDEARATNDPARGGMGGLALAEMNGQLAPQGGGGGGDYYGH---XXXXXXXXXXXRANKRPRVDWDARDRR 196
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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: F0WMQ1_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMQ1_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.850e-45
Identity = 80/138 (57.97%), Postives = 101/138 (73.19%), Query Frame = 2 
Query:  299 SERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATN--DPARGGLG 706
            ++R YWDRK + SLE  + A+K SSTLY+GNLSFYT E+Q+  LF +VG ++RVIMGLDR KK+PCGFCFVEY  H++ L     L  T LD R+I+  +D GF QGRQ+GRG SGGQ VRD+ R+ +  DP RGG G
Sbjct:   19 NQRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLSGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQ-VRDDRRSKDEYDPGRGGFG 155
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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A024GN20_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GN20_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.250e-44
Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 2 
Query:  302 ERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATN--DPARGGLG 706
            +R YWDRK + SLE  + A+K SSTLY+GNLSFYT E+Q+  LF +VG ++RVIMGLDR KK+PCGFCFVEY  H++ L     L  T LD R+I+  +D GF QGRQ+GRG SGGQ VRD+ R+ +  DP RGG G
Sbjct:   20 QRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLTGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQ-VRDDRRSKDEYDPGRGGFG 155
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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A1W0A133_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A133_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.290e-44
Identity = 80/140 (57.14%), Postives = 103/140 (73.57%), Query Frame = 2 
Query:  293 GWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLG 706
            G  ++ YWDR+ ++SLE  +EA+K SSTLYVGNLSF+T E+QIY LF  VGPVR VIMGLDR+KK+PCGFCFVEY            + +T LD+R+I+  +D GF++GRQYGRG +GGQ VRD+ R+ +D  P RGG G
Sbjct:   12 GPKKKEYWDRQTYASLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRIKKTPCGFCFVEYFNKDHAQACANFISSTKLDQRVIRCELDGGFREGRQYGRGTTGGQ-VRDDRRSKDDYDPGRGGYG 150
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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A225UYF8_9STRA (Nuclear cap-binding protein subunit 2 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A225UYF8_9STRA)

HSP 1 Score: 158 bits (400), Expect = 4.830e-44
Identity = 84/156 (53.85%), Postives = 108/156 (69.23%), Query Frame = 2 
Query:  278 EMLDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLGGLALAEENGQH 739
            + L  G S+R YWDRK +SS    + A+  SSTLYVGNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+ HS+       L  T LD R+++  +D GF++GRQ+GRG+SGGQ VRD+ R+ +D    RGG G    A  +G H
Sbjct:   13 QRLARGPSQRQYWDRKTFSSFAEQQRAMTRSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEYSTHSEAEACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQ-VRDDRRSKDDYDAGRGGYGRGDDATADGHH 167
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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A484EHH4_BRELC (Nuclear cap-binding protein subunit 2 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHH4_BRELC)

HSP 1 Score: 158 bits (399), Expect = 6.620e-44
Identity = 82/154 (53.25%), Postives = 109/154 (70.78%), Query Frame = 2 
Query:  284 LDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLGGLALAEENGQH 739
            L  G S+R YWDRK ++S    + A++ SSTLY+GNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+KH++       L  T LD R+++  +D GF++GRQ+GRG+SGGQ VRD+ R+ +D    RGG G    A  +G H
Sbjct:   15 LQRGPSQRQYWDRKTFTSFAEQQRAMEQSSTLYIGNLSFFTSEAQIYELFSRVGFVKRVIMGLDRFKKTPCGFCFVEYSKHTEADACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQ-VRDDRRSKDDYDAGRGGYGRGDDATADGHH 167
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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A0N7L479_PLAHL (Nuclear cap-binding protein subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L479_PLAHL)

HSP 1 Score: 158 bits (400), Expect = 7.430e-44
Identity = 80/143 (55.94%), Postives = 106/143 (74.13%), Query Frame = 2 
Query:  284 LDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLG 706
            L+ G S+R YWDRK +SS +  + +++ SSTLYVGNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+K+ +       L  T LD R+++  +D GF++GRQYGRG+SGGQ VRD+ R+ +D    RGG G
Sbjct:   15 LERGPSQRQYWDRKTYSSFDEQQRSIERSSTLYVGNLSFFTSEAQIYELFSRVGYVKRVIMGLDRFKKTPCGFCFVEYSKNVEAKACAQFLSETKLDNRVVRCEMDGGFREGRQYGRGLSGGQ-VRDDRRSKDDYDAGRGGYG 156
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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A8K1CR96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR96_PYTOL)

HSP 1 Score: 158 bits (399), Expect = 8.580e-44
Identity = 79/145 (54.48%), Postives = 103/145 (71.03%), Query Frame = 2 
Query:  278 EMLDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLG 706
            E +  G  +R YWDRK ++S E  + A+  S+TLY+GNLSF+T E QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY  H + +     ++ T LD R+I+  +D GFK+GRQ+GRG SGGQ VRD+ R+ +D  P RGG G
Sbjct:   13 ERVARGQQQRKYWDRKTYTSYEEQQRAIASSATLYIGNLSFFTSEVQIYELFSRVGNVKRVIMGLDRFKKTPCGFCFVEYNTHEEAVACANFVNETKLDNRVIRCEMDGGFKEGRQFGRGASGGQ-VRDDRRSRDDYDPGRGGYG 156
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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: A0A067BW87_SAPPC (Nuclear cap-binding protein subunit 2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BW87_SAPPC)

HSP 1 Score: 158 bits (399), Expect = 9.900e-44
Identity = 80/140 (57.14%), Postives = 102/140 (72.86%), Query Frame = 2 
Query:  293 GWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLG 706
            G  ++ YWDR+ ++SLE  +EA+K SSTLYVGNLSF+T E+QIY LF  VGPVR VIMGLDR+KK+PCGFCFVEY            +  T LD+R+I+  +D GF++GRQYGRG +GGQ VRD+ R+ +D  P RGG G
Sbjct:   12 GPKKKEYWDRQTYTSLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRLKKTPCGFCFVEYFNKEHAQACSNFVSGTKLDQRVIRCELDGGFREGRQYGRGTTGGQ-VRDDRRSKDDYDPGRGGYG 150
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BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Match: W2Q5Q2_PHYPN (Nuclear cap-binding protein subunit 2 n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q5Q2_PHYPN)

HSP 1 Score: 158 bits (399), Expect = 1.170e-43
Identity = 83/156 (53.21%), Postives = 109/156 (69.87%), Query Frame = 2 
Query:  278 EMLDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGLGGLALAEENGQH 739
            + L  G S+R YWDRK +SS    + A++ SSTLYVGNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+ H++       L  T LD R+++  +D GF++GRQ+GRG+SGGQ VRD+ R+ +D    RGG G    A  +G H
Sbjct:   13 QRLARGPSQRQYWDRKTFSSFAEQQRAMERSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEYSTHAEAEACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQ-VRDDRRSKDDYDAGRGGYGRGDDATADGHH 167
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig167.4519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI70_ECTSI2.730e-11191.00Nuclear cap-binding protein subunit 2 n=2 Tax=Ecto... [more]
F0WMQ1_9STRA6.850e-4557.97Nuclear cap-binding protein subunit 2 n=1 Tax=Albu... [more]
A0A024GN20_9STRA1.250e-4458.39Nuclear cap-binding protein subunit 2 n=1 Tax=Albu... [more]
A0A1W0A133_9STRA1.290e-4457.14Nuclear cap-binding protein subunit 2 n=1 Tax=Thra... [more]
A0A225UYF8_9STRA4.830e-4453.85Nuclear cap-binding protein subunit 2 n=2 Tax=Pero... [more]
A0A484EHH4_BRELC6.620e-4453.25Nuclear cap-binding protein subunit 2 n=1 Tax=Brem... [more]
A0A0N7L479_PLAHL7.430e-4455.94Nuclear cap-binding protein subunit 2 n=1 Tax=Plas... [more]
A0A8K1CR96_PYTOL8.580e-4454.48Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067BW87_SAPPC9.900e-4457.14Nuclear cap-binding protein subunit 2 n=2 Tax=Sapr... [more]
W2Q5Q2_PHYPN1.170e-4353.21Nuclear cap-binding protein subunit 2 n=8 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig167contigL-elsbetiae_contig167:46003..48323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.3
Seed ortholog evalue3.2e-88
Seed eggNOG ortholog2880.D8LI70
Preferred nameNCBP2
KEGG koko:K12883
KEGG Pathwayko03013,ko03015,ko03040,map03013,map03015,map03040
KEGG ModuleM00399
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005681,GO:0005737,GO:0005829,GO:0005845,GO:0005846,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006408,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016073,GO:0016246,GO:0016441,GO:0016458,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0023052,GO:0030422,GO:0031047,GO:0031050,GO:0031053,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032386,GO:0032388,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0034248,GO:0034399,GO:0034470,GO:0034518,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043900,GO:0043901,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045069,GO:0045071,GO:0045184,GO:0045292,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048525,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051028,GO:0051030,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071363,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097064,GO:0097159,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1903311,GO:1903313,GO:1903900,GO:1903901,GO:1990904,GO:2000112
EggNOG free text desc.RNA cap binding
EggNOG OGsKOG0121@1,KOG0121@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Ec32 ortholog descriptionnuclear cap-binding protein subunit 2
Ec32 orthologEc-14_003380.1
Exons4
Model size871
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig167.4519.1prot_L-elsbetiae_contig167.4519.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig167 46274..48323 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.1117778-UTR-L-elsbetiae_contig167:46002..462731622815694.1117778-UTR-L-elsbetiae_contig167:46002..46273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig167 46003..46273 +
1691683042.6280556-UTR-L-elsbetiae_contig167:46002..462731691683042.6280556-UTR-L-elsbetiae_contig167:46002..46273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig167 46003..46273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.1223273-CDS-L-elsbetiae_contig167:46273..464411622815694.1223273-CDS-L-elsbetiae_contig167:46273..46441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig167 46274..46441 +
1691683042.6391144-CDS-L-elsbetiae_contig167:46273..464411691683042.6391144-CDS-L-elsbetiae_contig167:46273..46441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig167 46274..46441 +
1622815694.1343508-CDS-L-elsbetiae_contig167:47055..471291622815694.1343508-CDS-L-elsbetiae_contig167:47055..47129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig167 47056..47129 +
1691683042.6485324-CDS-L-elsbetiae_contig167:47055..471291691683042.6485324-CDS-L-elsbetiae_contig167:47055..47129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig167 47056..47129 +
1622815694.1452458-CDS-L-elsbetiae_contig167:47500..476391622815694.1452458-CDS-L-elsbetiae_contig167:47500..47639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig167 47501..47639 +
1691683042.6570172-CDS-L-elsbetiae_contig167:47500..476391691683042.6570172-CDS-L-elsbetiae_contig167:47500..47639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig167 47501..47639 +
1622815694.1582937-CDS-L-elsbetiae_contig167:48104..483231622815694.1582937-CDS-L-elsbetiae_contig167:48104..48323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig167 48105..48323 +
1691683042.6653655-CDS-L-elsbetiae_contig167:48104..483231691683042.6653655-CDS-L-elsbetiae_contig167:48104..48323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig167 48105..48323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig167.4519.1

>prot_L-elsbetiae_contig167.4519.1 ID=prot_L-elsbetiae_contig167.4519.1|Name=mRNA_L-elsbetiae_contig167.4519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=200bp
MTEMLDFGWSERPYWDRKNWSSLESYKEALKISSTLYVGNLSFYTQESQI
YALFEQVGPVRRVIMGLDRVKKSPCGFCFVEYTKHSDTLMAITCLDATAL
DERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATNDPARGGLGGLALA
EENGQHAPQGGGAGDYYGRGGGGGGDYYGGGGGGPNKRPRVDWDARDRR*
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mRNA from alignment at L-elsbetiae_contig167:46003..48323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig167.4519.1 ID=mRNA_L-elsbetiae_contig167.4519.1|Name=mRNA_L-elsbetiae_contig167.4519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2321bp|location=Sequence derived from alignment at L-elsbetiae_contig167:46003..48323+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGTGGGCACGCTGTTTTTCGATTCACTGCCCCCCGGCGTGCCAGGGAT
CGGGAGGCTGGAGGGGCAAGCTCACACCCCACCTTGGTCCAGTGTGCACT
TACGGTCTGGTTGCACGAATCGCGCTTGCTTCGTTGTGATATCACGCGTG
TATTTCGCACTTTTGAAAAAACTTGCACCGGGCAAAAACGAGGAGACAGA
GAGAGAGAGAGTACTAGTACATTGGCGGCGCTGCGTCCTCGGCGTTCCTC
GGGCACCGAGCGCGAGGGAGGATGACTGAGATGCTTGACTTCGGATGGTC
GGAGCGGCCTTACTGGGACCGCAAGAACTGGTCCTCGCTCGAGTCATACA
AGGAGGCGCTGAAAATCTCCAGCACACTCTACGTGGGTAATCTGTCGTTC
TACACCCAGGAGTCGCAGATCTACGCGCTATTCGAGCAGGTATGATGTAT
AGTAGAGCCCCCGCCCCTCCTGTTTATAAGGCGAGCGTTCTCTTTGTCGC
CTCTCGTGTAGGCACAACCTTGGTACAACGAGCCAGGAGGTGGGACGTGT
ATGTGTATGTAGGCGCATTGAATTCCGCACATGATTGTAGGTAGCGTGGT
ATGTCCCCTCTGTGGAAGCAACGATGCAGGCTGGACGTTCGCGTAAGGTA
CCCGAAGATTGCTGCTGCCATGGTCTGGACCACTCCCCGCGTTGACGCCG
CCTAACCGTGCCGGCAAATGATGCAGCAGTCGTCAATCTCGAGTGAAGTG
CCTTCCGTTGACATGTCGTTGTCTCTGATTGATCTGCAATGCACCAGTAG
CTGCTACATAGCGCTCCCACACGACACGGAGAGCGCGCCGGGTGTGCTCT
CAACTGCTGTGCGTAGATAATGCGTTTGCCCCCCCCGCCCCGCCCCACGC
GCTGCTTTACATCCCAATCCCAGCACTCTTCAAAATATGTATCTATGTAC
AAACATACATGTGTTGACGTTGTCCAGAGAGCCTCCTCTAACCGTCACAT
TTCTTGCTTGCGTGCCGGCGCCGTGTGCCATGCCGTACCATGCCATGCCA
TAGGTCGGCCCCGTCCGACGAGTGATCATGGGCCTGGATCGCGTCAAGAA
GTCGCCGTGCGGTTTCTGCTTCGTCGAGTAAGTGTGCCTGTGGTGTGTGG
GGCAACCCCCCTGTAAGAACCTGACAGGTTCGATCATTTTGTACGGCAAC
TTGGAGCCCTCATTGAACCCGAAAAACAGCGTGTTGCTACAATACTAATC
AAGTTGTGGTACAAGACCGATCTCTGTCACTGCGCCGTGAGCCCACCAGA
TGAGCAACTTAAACGTAACACGTAGCGTGGAGACTTACAGACATACGCTA
AGTCTGTCGTTGTCTCAGTTCTTGCAGCACATTCCCCGCCCCCGACCGCA
TAGCACCTCGGTTCGATGTTGCATATGTAGGTATGTAGATATTCACGTTA
TTGTGTTTATTTATTATTTACCTACAGCACATGTCTCTTGTTTTCAAGGT
ACACGAAGCACTCCGACACGTTGATGGCCATCACCTGCCTCGACGCCACG
GCACTGGACGAGCGCATCATCAAAGTGGGGATCGATCCGGGGTTCAAGCA
GGGCCGGCAGTACGGACGCGGCATGTCGGGAGGGCAGGTGGGTGGGCAGA
CGGCCCCCGCTCGTTTTTGTTCAACAAGCGGTAAGCGCTGGAATGTATCA
TCATGCTCTGGTTGAACAACGGCGGTGGTACATGTATGTACGTACGGAAT
GGGTTGTTTTGCCTGTTTGGGCTGGGGGCCTCAGCGCTGTTTCCAAAACA
TTTTGTCTTTTGAGAAGACTGCAAAAGCAAGGCGAGCGTCTCCGAAAGGA
TTTACAAAAAATGCATGCCTGCAGGCGCCGCTGCTGTCTCGAGAACGAAA
AGCAGCCGCGATTAACTTCGATTCCGATAAACCAGGAGTTCCAAGCATGG
CTCTTCAGCTCCAGGTTATTGCCACGTGTTACGCGCACGCACGCGCCAAC
CAACTCCAACAACATTCCCGCTGCCTCGTCCTTTCGTCGCCCCTCCCTTC
CTCCCCAACATACCCCTCCCGATCGTACCCACACCGTACCGTATATACCG
AGCAGGTGAGAGACGAAGCACGCGCGACGAACGATCCGGCGCGAGGGGGT
TTGGGTGGCCTAGCCCTGGCAGAGGAGAACGGCCAGCATGCGCCGCAGGG
AGGAGGGGCGGGGGACTACTACGGACGGGGCGGGGGGGGCGGGGGAGACT
ACTACGGGGGCGGGGGGGGGGGTCCCAATAAGCGGCCACGTGTGGACTGG
GATGCGCGGGATCGCCGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig167:46003..48323+

>mRNA_L-elsbetiae_contig167.4519.1 ID=mRNA_L-elsbetiae_contig167.4519.1|Name=mRNA_L-elsbetiae_contig167.4519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1200bp|location=Sequence derived from alignment at L-elsbetiae_contig167:46003..48323+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTGAGATGCTTGACTTCGGATGGTCGGAGCGGCCTTACTGGGACCG
CAAGAACTGGTCCTCGCTCGAGTCATACAAGGAGGCGCTGAAAATCTCCA
GCACACTCTACGTGGGTAATCTGTCGTTCTACACCCAGGAGTCGCAGATC
TACGCGCTATTCGAGCAGATGACTGAGATGCTTGACTTCGGATGGTCGGA
GCGGCCTTACTGGGACCGCAAGAACTGGTCCTCGCTCGAGTCATACAAGG
AGGCGCTGAAAATCTCCAGCACACTCTACGTGGGTAATCTGTCGTTCTAC
ACCCAGGAGTCGCAGATCTACGCGCTATTCGAGCAGGTCGGCCCCGTCCG
ACGAGTGATCATGGGCCTGGATCGCGTCAAGAAGTCGCCGTGCGGTTTCT
GCTTCGTCGAGTCGGCCCCGTCCGACGAGTGATCATGGGCCTGGATCGCG
TCAAGAAGTCGCCGTGCGGTTTCTGCTTCGTCGAGTACACGAAGCACTCC
GACACGTTGATGGCCATCACCTGCCTCGACGCCACGGCACTGGACGAGCG
CATCATCAAAGTGGGGATCGATCCGGGGTTCAAGCAGGGCCGGCAGTACG
GACGCGGCATGTCGGGAGGGCAGGTACACGAAGCACTCCGACACGTTGAT
GGCCATCACCTGCCTCGACGCCACGGCACTGGACGAGCGCATCATCAAAG
TGGGGATCGATCCGGGGTTCAAGCAGGGCCGGCAGTACGGACGCGGCATG
TCGGGAGGGCAGCAGGTGAGAGACGAAGCACGCGCGACGAACGATCCGGC
GCGAGGGGGTTTGGGTGGCCTAGCCCTGGCAGAGGAGAACGGCCAGCATG
CGCCGCAGGGAGGAGGGGCGGGGGACTACTACGGACGGGGCGGGGGGGGC
GGGGGAGACTACTACGGGGGCGGGGGGGGGGGTCCCAATAAGCGGCCACG
TGTGGACTGGGATGCGCGGGATCGCCGGTGACAGGTGAGAGACGAAGCAC
GCGCGACGAACGATCCGGCGCGAGGGGGTTTGGGTGGCCTAGCCCTGGCA
GAGGAGAACGGCCAGCATGCGCCGCAGGGAGGAGGGGCGGGGGACTACTA
CGGACGGGGCGGGGGGGGCGGGGGAGACTACTACGGGGGCGGGGGGGGGG
GTCCCAATAAGCGGCCACGTGTGGACTGGGATGCGCGGGATCGCCGGTGA
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