mRNA_L-elsbetiae_contig1667.4497.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1667.4497.1
Unique NamemRNA_L-elsbetiae_contig1667.4497.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1667.4497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1667contigL-elsbetiae_contig1667:19834..20477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.196084-CDS-L-elsbetiae_contig1667:19833..200551622815692.196084-CDS-L-elsbetiae_contig1667:19833..20055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 19834..20055 +
1691683041.425369-CDS-L-elsbetiae_contig1667:19833..200551691683041.425369-CDS-L-elsbetiae_contig1667:19833..20055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 19834..20055 +
1622815692.2111616-CDS-L-elsbetiae_contig1667:20427..204751622815692.2111616-CDS-L-elsbetiae_contig1667:20427..20475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 20428..20475 +
1691683041.43369-CDS-L-elsbetiae_contig1667:20427..204751691683041.43369-CDS-L-elsbetiae_contig1667:20427..20475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 20428..20475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1667.4497.1prot_L-elsbetiae_contig1667.4497.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1667 19834..20475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1667.4497.1

>prot_L-elsbetiae_contig1667.4497.1 ID=prot_L-elsbetiae_contig1667.4497.1|Name=mRNA_L-elsbetiae_contig1667.4497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
GSCGRCGSRRNKYCAKGSSGEEEGSCGRGSSEEGDCDSGGDGNGRIGSYG
MAIDAAAEKYIDEEEVAAAGALESGGLSLLIQRGDEGWHG
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mRNA from alignment at L-elsbetiae_contig1667:19834..20477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1667.4497.1 ID=mRNA_L-elsbetiae_contig1667.4497.1|Name=mRNA_L-elsbetiae_contig1667.4497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=644bp|location=Sequence derived from alignment at L-elsbetiae_contig1667:19834..20477+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCTGCGGCCGCTGTGGCTCGCGCCGAAACAAATATTGTGCCAAAGG
CAGCAGCGGCGAGGAGGAGGGCTCTTGCGGGCGAGGCAGCAGCGAGGAAG
GTGATTGTGACAGTGGCGGCGACGGTAACGGGCGTATCGGCTCCTACGGG
ATGGCGATAGATGCGGCGGCGGAAAAATACATCGACGAGGAAGAGGTGGC
AGCTGCTGGTGCCCTGGAAAGCGTGAGTCCCTCGCTTAGGGCAGATGCAT
GTAATGGCTGTCGTTTCTGTTAGGGGTAGATGGAGCTTGATACGGTGGGT
GTTCGTATGGATGTGCATGCGCAGTGTGGGAATGGGTCGCTGCGGGTTTT
GCACCGCGGATCATTTAATCCGTGACTTTTTGGGCTAAAGTATGCTACAA
TACGGCGTCTGCCAACCACTATTTCGGCGCCGCTTCCCACCGCCAACGTT
GCTGCCACTGCCCTCACTCCATTCAATACCGCCGCTGTCAACGATCCACC
ACTGCCACAACCTCTCCTGCTGCTATGGCCCATCCCCACACCTCTCTCCG
ACACCATTGTCGCAATTTCCCTCTTCTCTCTGTGTAAATATCAGGGCGGG
TTGTCGTTGCTGATTCAGCGAGGAGACGAAGGCTGGCACGGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1667:19834..20477+

>mRNA_L-elsbetiae_contig1667.4497.1 ID=mRNA_L-elsbetiae_contig1667.4497.1|Name=mRNA_L-elsbetiae_contig1667.4497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig1667:19834..20477+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCTGCGGCCGCTGTGGCTCGCGCCGAAACAAATATTGTGCCAAAGG
CAGCAGCGGCGAGGAGGAGGGCTCTTGCGGGCGAGGCAGCAGCGAGGAAG
GTGATTGTGACAGTGGCGGCGACGGTAACGGGCGTATCGGCTCCTACGGG
ATGGCGATAGATGCGGCGGCGGAAAAATACATCGACGAGGAAGAGGTGGC
AGCTGCTGGTGCCCTGGAAAGCGGCAGCTGCGGCCGCTGTGGCTCGCGCC
GAAACAAATATTGTGCCAAAGGCAGCAGCGGCGAGGAGGAGGGCTCTTGC
GGGCGAGGCAGCAGCGAGGAAGGTGATTGTGACAGTGGCGGCGACGGTAA
CGGGCGTATCGGCTCCTACGGGATGGCGATAGATGCGGCGGCGGAAAAAT
ACATCGACGAGGAAGAGGTGGCAGCTGCTGGTGCCCTGGAAAGCGGCGGG
TTGTCGTTGCTGATTCAGCGAGGAGACGAAGGCTGGCACGGGGGCGGGTT
GTCGTTGCTGATTCAGCGAGGAGACGAAGGCTGGCACGGG
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