mRNA_L-elsbetiae_contig16665.4495.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16665.4495.1
Unique NamemRNA_L-elsbetiae_contig16665.4495.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16665.4495.1 vs. uniprot
Match: D7FIL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIL7_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 6.100e-46
Identity = 123/282 (43.62%), Postives = 151/282 (53.55%), Query Frame = 1 
Query:    1 LLHAFYKWSCQEFSEPVRPAPAQVVPDVTHLAAPVKTA-----------------------GVTAPYGGVAAAERLWAAQGGTAGGR-----TERVKMLWQKEQDELSA---RKQEQLRLXXXXXXXXLF--LLRQRHWHDPVDSLSYEGALQLY--LKERNLRAHEEADVSRAGVHSASWINETNRSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTGFQAVPDITPAVDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQLWSQWEV 741
            +LH+FYKWSC+EFSEPV P PA VVPDV  LAAP K                         G  A +GG AAA  + +  GG+ G       +       Q E+D+ SA   RK+++L+             LL Q H H+PVDSLSYEG   L+     RN +           + S SWINET+ SLL+TAAGDGVVR W  V+EA        ADE   P  LVT F+A+PD+     G   + T WQQRRGLLSAAG+S  + VWDM SEQ+W QWEV
Sbjct:    1 MLHSFYKWSCREFSEPVTPPPAPVVPDVVDLAAPGKKXXXXXXXQQQGGAADFFAGLSPGRGPAAAWGGEAAAVGMMSV-GGSMGNPAMPPLSSSPYFAQQYEEDKQSAHEARKEQELQRQKRELQELRERQLLLQHHRHEPVDSLSYEGGHHLHGSFSNRNRKGTR--------MTSVSWINETDISLLLTAAGDGVVRVWGDVMEA-------GADEGRSPD-LVTAFRALPDLEQNPGGPG-LATHWQQRRGLLSAAGASRHLNVWDMGSEQMWKQWEV 264
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BLAST of mRNA_L-elsbetiae_contig16665.4495.1 vs. uniprot
Match: A0A6H5KBF0_9PHAE (Raptor_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.830e-40
Identity = 135/372 (36.29%), Postives = 161/372 (43.28%), Query Frame = 1 
Query:    1 LLHAFYKWSCQEFSEPVRPAPAQVVPDVTHLAAPVKTA-----------------------GVTAPYGGVAAAERLWAAQGGTAGGRTERVK----MLWQKEQDELSARKQEQLRLXXXXXXXXLFL-----LRQRHWHDPVDSLSYEGALQLYLKERNLRAHEEADV-------------------------------------------------------------------------------------------SRAGVH--SASWINETNRSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTGFQAVPDITPAVDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQLWSQWEV 741
            +LH+FYKWSC+EFSEPV P PA VVPDV  L AP K                         G  A +GG AAA  + +  GG        +        Q E+D+ SA ++ +   XXXXXXX   L     L Q H H+PVDSLSYEG   LY+K RN+R HEEAD                                                                                            +R G    S SWINET+ SLL+TAAGDGVVR W  V+EA        ADE   P  LVT F+A+PD+     G   + T WQQRRGLLSAAG+S  + VWDM SEQ+W QWEV
Sbjct: 1533 MLHSFYKWSCREFSEPVTPPPAPVVPDVVDLTAPAKKQHQHQQVQQQGGAADLFAGLSPGRGPPAAWGGEAAAVGMMSVGGGMWNPARPPLSSSPYFAQQYEEDKQSAHEERKXXXXXXXXXXLQELRERQLLLQHHRHEPVDSLSYEGGHHLYVKARNIRVHEEADALVKKFETLTGGEPAKVEYLSNRVRRADLKDEESERRLELPLKRVLVLGDKQSTRSLTFHPYEPFVVAASNEDGVSVFDFEEGVKHGSFSNRNRKGTRMTSVSWINETDNSLLLTAAGDGVVRVWGDVMEA-------GADEGRSPD-LVTAFRALPDLEQD-QGGPGLATHWQQRRGLLSAAGASRHLNVWDMGSEQMWKQWEV 1895
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BLAST of mRNA_L-elsbetiae_contig16665.4495.1 vs. uniprot
Match: A0A7S3Q1Z5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1Z5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.700e-11
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:  421 VHSASWINETNRSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTGFQAVPDITPAVDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQL 723
            + S SWINE NR+ L++   DG VR W  VL   +      +D+    P L + F A+P++ P       ++ EWQQ  G L A G++ F+R WD+ SE+L
Sbjct: 1002 ITSMSWINERNRTKLLSGCDDGSVRIWDKVLTQCS------SDDDHAKPELASAFYALPELEPGNKRKSGLIAEWQQSEGRLIAGGATKFIRCWDLESEKL 1096
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BLAST of mRNA_L-elsbetiae_contig16665.4495.1 vs. uniprot
Match: A0A1Z5JAI2_FISSO (Regulatory associated protein of mTOR n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAI2_FISSO)

HSP 1 Score: 65.9 bits (159), Expect = 1.270e-8
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 1 
Query:  388 AHEEADVSRAGVHSASWINETN-RSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTGFQAVPDITPAVDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQL 723
            ++E  D +R  + S  WINE + +S+++  + DG VR W G+++      G  +        LVT F A+P   P   G   +V EWQ  +G L  AGSS F+R WD+ SEQ+
Sbjct: 1290 SNENPDGTR--ITSCCWINEKSCKSMVLVGSDDGAVRLWGGMIDEIGRPTGTTS--------LVTAFSALPMSLPVNSGSG-LVCEWQSEKGRLITAGSSQFLRSWDVESEQI 1391
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16665.4495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FIL7_ECTSI6.100e-4643.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBF0_9PHAE2.830e-4036.29Raptor_N domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S3Q1Z5_9STRA1.700e-1137.62Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A1Z5JAI2_FISSO1.270e-836.28Regulatory associated protein of mTOR n=2 Tax=Fist... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16665contigL-elsbetiae_contig16665:639..3615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue4e-40
Seed eggNOG ortholog2880.D7FIL7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TOR signaling
EggNOG OGsKOG1517@1,KOG1517@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size741
Cds size741
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16665.4495.1prot_L-elsbetiae_contig16665.4495.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16665 639..3615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.143845-CDS-L-elsbetiae_contig16665:638..10571622815692.143845-CDS-L-elsbetiae_contig16665:638..1057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16665 639..1057 +
1691683041.3982177-CDS-L-elsbetiae_contig16665:638..10571691683041.3982177-CDS-L-elsbetiae_contig16665:638..1057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16665 639..1057 +
1622815692.154118-CDS-L-elsbetiae_contig16665:2682..28601622815692.154118-CDS-L-elsbetiae_contig16665:2682..2860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16665 2683..2860 +
1691683041.4095607-CDS-L-elsbetiae_contig16665:2682..28601691683041.4095607-CDS-L-elsbetiae_contig16665:2682..2860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16665 2683..2860 +
1622815692.163656-CDS-L-elsbetiae_contig16665:3471..36151622815692.163656-CDS-L-elsbetiae_contig16665:3471..3615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16665 3472..3615 +
1691683041.4175978-CDS-L-elsbetiae_contig16665:3471..36151691683041.4175978-CDS-L-elsbetiae_contig16665:3471..3615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16665 3472..3615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16665.4495.1

>prot_L-elsbetiae_contig16665.4495.1 ID=prot_L-elsbetiae_contig16665.4495.1|Name=mRNA_L-elsbetiae_contig16665.4495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=247bp
LLHAFYKWSCQEFSEPVRPAPAQVVPDVTHLAAPVKTAGVTAPYGGVAAA
ERLWAAQGGTAGGRTERVKMLWQKEQDELSARKQEQLRLQQQQQQQQLFL
LRQRHWHDPVDSLSYEGALQLYLKERNLRAHEEADVSRAGVHSASWINET
NRSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTGFQAVPD
ITPAVDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQLWSQWEV
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mRNA from alignment at L-elsbetiae_contig16665:639..3615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16665.4495.1 ID=mRNA_L-elsbetiae_contig16665.4495.1|Name=mRNA_L-elsbetiae_contig16665.4495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2977bp|location=Sequence derived from alignment at L-elsbetiae_contig16665:639..3615+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTTGCACGCCTTCTACAAGTGGAGCTGCCAGGAGTTCAGCGAGCCTGT
GCGCCCGGCCCCGGCCCAGGTCGTCCCCGACGTGACCCATCTTGCGGCGC
CGGTCAAGACGGCCGGCGTGACGGCCCCCTACGGGGGGGTCGCGGCGGCC
GAGCGGCTTTGGGCTGCGCAGGGGGGCACCGCGGGCGGCCGGACCGAGAG
GGTGAAGATGCTGTGGCAGAAGGAACAGGATGAGCTGAGCGCCCGGAAGC
AGGAGCAGCTCCGGCTCCAGCAGCAGCAGCAGCAGCAGCAGCTGTTTCTG
CTGCGGCAGCGGCACTGGCACGACCCCGTGGACTCGCTGAGCTACGAGGG
GGCCCTCCAGCTGTACCTCAAGGAAAGGAACTTGCGCGCCCACGAGGAGG
CTGATGTGAGTAGAGCCGGGTTGGGCAGAGCGGACCATGGTAGAGGGGAG
TGAGGAGCTGGAGAGACCAGTGCAGGCGCATCAACGGCGCTGTACCTAAT
GTCGAAAAAGGATGCCGAACGATGTAGGATTATGTAGCTGTCGAGTGGGG
TGCGCGCGAAAATTAAAGTTGGGCCTGCGGGAAAGTCCACGATGAAGAGA
AAAAAAGGGGGTTCCGTACATTGTGCTATTGTGGATTGCCGGTGTCATGA
CGGTGTCGCTGGGATCATGCCACGAAACCCCGCGTCCGATCATCCCACCG
ACCGATACTGACTGCTGCGCCCCAACCCCCAATCGCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCTACACAAATCAGG
CGCTCGTAAAGGGGTATGAGGCACTCAGGGCGCCGCCGGTCCGCCAGGAG
GCGCTCTTGACACGCGCGCGCCGCGTCGATAAGGACAGCGAGAAGCCGCC
GAAGTACAAGCTGGGCCTGGCCGTGAAGTCGGTCTTGGACCTCGGACGCA
ATCTGCAGCGGCACACGACCTCGCTGGCGTTCCACCCGTACGAGCCGCTG
CTGGTGGCGGCGGACTGCCAGGACGGCATTTCTGTCTGCGGCTTCGAGAT
GGATGTCAAGTGAGTCCTCAATCGGTCACTTGAGTCTGGTGACGAGGGGA
GAGAAGACGGGCGTAGGTGTACAGGGGTACGTACATACACATACAGCTTG
CACATAAAGGAAGTTTGCATGTAAATTATGCTCGACACACCTTCTGAGCA
GAGCGTTAATGCCACTGCAGATCCTCCCTGCCGCGAAAAAATCACAAAAA
ATACATACGGGGCCCCCTCTGCTGCTCTGTACTTCCTTTGTATTCATCCT
GTTGGATCCTCTTCAAGAGGGGTCGAGGCGATGGATCGCATGTGGCGCGG
TCGGTGGTTGGGGGTGGGAGTGACGGTCGTGTGTCGTGGCGTGGGGCTGG
TTGTTTGGCGTGCAAGCGGCCTGGGGTTAAGAGTTTAGGTCTCTAAATGA
GGGGTAACATCGATCGATCAAACGGATGGATGTAGGTAAATCTCTGTGCT
TGAGTAGGGATTGTGCCTCGCGTGTGTGTTGTTGGCTGCGCAGACGGGGT
TCGGGCAAGGGCTGTTTTTTGACGCAGTGAAAACCACTTGCTTTCCCTCC
CCCATGTCCGCCAGCCGAGATGTGATGCGCGTTACCTCAGGTTTTCCCGC
AAACTTTAGTCTTGTCTAGCCTAGTCTAGCCTAGTTAGTCACAACGTAAA
CCGAGTAGCCGGTAGAAACTGGACCCCCCCCCCCCCCCCCCCCTCCTTCC
TACATTGCACCCACACGGCGGTGCCTCCGATCGTTTTTCTGACTCTGCCT
CCTCTGACTCTCCGCTGCGATCCTTCGTCCGTTCCGTTCCGTTCCGTTCC
GTTCCGTTCCGTTCCGTTCCGTTCCGTTCTGTTCCGTTCCGTTCCGTTCC
GTTCCCGCCATGAAAATTGCCGCCCGCTTTGTGTGTCCGTCGAACAAAAC
AACGATGATCATCTCGCCGCCAATTAATCAGCCACCAACCATCGAACGCC
AAGAGGTGCGGAAGCTTCTCGAACGGCAACCGGCCCGGCACCAGAGTACA
CTCCGCCTCCTGGATCAACGAGACAAACAGGTCCCTCCTTATCACCGCCG
CGGGCGACGGCGTCGTCAGGGCCTGGAGCGGCGTCTTGGAGGCACAGACT
GACCTCGATGGGGGGGCAGCGGATGAGAAGATGCAGCCGCCGGTGCTGGT
GACCGGGTTCCAGGCGGTTCCGGTAAGGGAGGGGGCTGTGATGGGGTGTC
GGAAGTCCATACGTGTACGTATGTGTACAAAGTACATAGTACATACATAT
GTACAAGGTGTAAGGGACCTTTGTGGTTTTATAAGTGAGCGTTACTTGTG
GTGGCGTTTTTTGTTTTTTTGTGTTGGACGTGTCTTGTCCCGTTTGATTG
AGTTTGGTTTCACTGATTGTGTCGCGCCTTGTCAGCCGTGGCTATTTTCT
TCGCCGGGTCCTGGGTCCTGGGTCCTGGTGTGTCGGTGTCGTCGGTATCT
TGAAAGTTACTTGCTATTTTGTGTTTTGTGCGCTCGTGTGCGTGTGTTGT
GTTTGTTTTGTTTGATCGAGAGAGAGAGCAAGAGAGCAAGAGACCACCTG
GGCTGGCCTGTTGCTTGTTGCTTGCTTTTGGGGTGCATGATCGCCGTCCG
CCTGGCCGCCCTCGATAACCGAGCATGGTGCATTTTAACGTTTCAAGGCC
GATCCAACCCAAAGATATTTGTTTCTGATGTTGCTAGTCGAGACCACCAC
GCGGCGAGTTCCCCTCCCCCCCCCCGCCGCAATCACGCACTAACATATAT
ATTTTGTATTTTTTCCACCTCTTACCGCCTCAGGACATAACACCAGCCGT
CGACGGGGATGTGTGTATGGTGACGGAATGGCAGCAGCGGCGGGGCCTGC
TGTCGGCCGCGGGGAGTAGCCCGTTTGTGAGGGTGTGGGACATGGCAAGC
GAGCAGCTGTGGAGTCAGTGGGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16665:639..3615+

>mRNA_L-elsbetiae_contig16665.4495.1 ID=mRNA_L-elsbetiae_contig16665.4495.1|Name=mRNA_L-elsbetiae_contig16665.4495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1482bp|location=Sequence derived from alignment at L-elsbetiae_contig16665:639..3615+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTTGCACGCCTTCTACAAGTGGAGCTGCCAGGAGTTCAGCGAGCCTGT
GCGCCCGGCCCCGGCCCAGGTCGTCCCCGACGTGACCCATCTTGCGGCGC
CGGTCAAGACGGCCGGCGTGACGGCCCCCTACGGGGGGGTCGCGGCGGCC
GAGCGGCTTTGGGCTGCGCAGGGGGGCACCGCGGGCGGCCGGACCGAGAG
GGTGAAGATGCTGTGGCAGAAGGAACAGGATGAGCTGAGCGCCCGGAAGC
AGGAGCAGCTCCGGCTCCAGCAGCAGCAGCAGCAGCAGCAGCTGTTTCTG
CTGCGGCAGCGGCACTGGCACGACCCCGTGGACTCGCTGAGCTACGAGGG
GGCCCTCCAGCTGTACCTCAAGGAAAGGAACTTGCGCGCCCACGAGGAGG
CTGATGTGAGTAGAGCCGGCTCTTGCACGCCTTCTACAAGTGGAGCTGCC
AGGAGTTCAGCGAGCCTGTGCGCCCGGCCCCGGCCCAGGTCGTCCCCGAC
GTGACCCATCTTGCGGCGCCGGTCAAGACGGCCGGCGTGACGGCCCCCTA
CGGGGGGGTCGCGGCGGCCGAGCGGCTTTGGGCTGCGCAGGGGGGCACCG
CGGGCGGCCGGACCGAGAGGGTGAAGATGCTGTGGCAGAAGGAACAGGAT
GAGCTGAGCGCCCGGAAGCAGGAGCAGCTCCGGCTCCAGCAGCAGCAGCA
GCAGCAGCAGCTGTTTCTGCTGCGGCAGCGGCACTGGCACGACCCCGTGG
ACTCGCTGAGCTACGAGGGGGCCCTCCAGCTGTACCTCAAGGAAAGGAAC
TTGCGCGCCCACGAGGAGGCTGATGTGAGTAGAGCCGGAGTACACTCCGC
CTCCTGGATCAACGAGACAAACAGGTCCCTCCTTATCACCGCCGCGGGCG
ACGGCGTCGTCAGGGCCTGGAGCGGCGTCTTGGAGGCACAGACTGACCTC
GATGGGGGGGCAGCGGATGAGAAGATGCAGCCGCCGGTGCTGGTGACCGG
GTTCCAGGCGGTTCCGAGTACACTCCGCCTCCTGGATCAACGAGACAAAC
AGGTCCCTCCTTATCACCGCCGCGGGCGACGGCGTCGTCAGGGCCTGGAG
CGGCGTCTTGGAGGCACAGACTGACCTCGATGGGGGGGCAGCGGATGAGA
AGATGCAGCCGCCGGTGCTGGTGACCGGGTTCCAGGCGGTTCCGGACATA
ACACCAGCCGTCGACGGGGATGTGTGTATGGTGACGGAATGGCAGCAGCG
GCGGGGCCTGCTGTCGGCCGCGGGGAGTAGCCCGTTTGTGAGGGTGTGGG
ACATGGCAAGCGAGCAGCTGTGGAGTCAGTGGGAGGTGGACATAACACCA
GCCGTCGACGGGGATGTGTGTATGGTGACGGAATGGCAGCAGCGGCGGGG
CCTGCTGTCGGCCGCGGGGAGTAGCCCGTTTGTGAGGGTGTGGGACATGG
CAAGCGAGCAGCTGTGGAGTCAGTGGGAGGTG
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