mRNA_L-elsbetiae_contig1662.4475.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1662.4475.1
Unique NamemRNA_L-elsbetiae_contig1662.4475.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Match: D8LHH9_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH9_ECTSI)

HSP 1 Score: 401 bits (1030), Expect = 6.630e-137
Identity = 193/208 (92.79%), Postives = 198/208 (95.19%), Query Frame = 1 
Query:   94 MSSKPVALLLGDTFPDFEAETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKSRDVKMLAISCDPLDSHQGWLGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSLQLTATRSLATPADWQKGGNCMILPTVSAEDATEKFPEVK 717
            MSS PVALLLGD FPDFEAETT GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEF  RDVKMLAISCDPL+SHQGW+GDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSA GLPMTVRTVYVISPEK+LKLALTYPASTGRNFDEIIR IDSLQLTATRSLATPADWQKGG+CM+LPTVS EDA EKFPE K
Sbjct:    1 MSSDPVALLLGDKFPDFEAETTAGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHK 208
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BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Match: UPI0018F6C154 (peroxiredoxin-6 n=2 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F6C154)

HSP 1 Score: 250 bits (638), Expect = 1.050e-77
Identity = 116/201 (57.71%), Postives = 150/201 (74.63%), Query Frame = 1 
Query:  121 LGDTFPDFEAETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKSRDVKMLAISCDPLDSHQGWLGDIKAHTG----HEVNFPLIADADRSIAASLGMLHPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSLQLTATRSLATPADWQKGGNCMILPTVSAEDATEKFPE 711
            LGD FP+FEA+TT G IK H++LG+SWG+LCSHPAD+TPVCTTELG  AKL     EF+ R+VKM+A+S D +  H GW  DI A+ G     ++ FP+IAD  R +A  LGML P   +  GLP+T R V+VI P+K LKL++ YPA+TGRNFDEI+R IDSLQLTA + +ATP DW+ GG+CM+LP++S EDA + FP+
Sbjct:    5 LGDVFPNFEADTTAGRIKFHEWLGNSWGILCSHPADYTPVCTTELGRMAKL---ASEFQKRNVKMIALSIDSVQDHHGWTKDINAYIGASNVEKLPFPIIADEKRELAVQLGMLDPSERNKEGLPLTARAVFVIGPDKTLKLSILYPATTGRNFDEILRVIDSLQLTAYKKVATPVDWKAGGDCMVLPSISEEDAKKLFPK 202
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BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Match: Q966Y9_SUBDO (Glutathione peroxidase n=1 Tax=Suberites domuncula TaxID=55567 RepID=Q966Y9_SUBDO)

HSP 1 Score: 249 bits (637), Expect = 1.260e-77
Identity = 119/197 (60.41%), Postives = 152/197 (77.16%), Query Frame = 1 
Query:  121 LGDTFPDFEAETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKSRDVKMLAISCDPLDSHQGWLGDIKAHTG-HEVNFPLIADADRSIAASLGMLHPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSLQLTATRSLATPADWQKGGNCMILPTVSAEDATEKFP 708
            LG  FP+FEA+TT+GPIK HD+LG  WG+L SHPADFTPVCTTELGT AKL  E   F+ R+VK++AISCDP+DSH+ W+ DI+++       +P+IAD +R +A   GML P+    AGLP+T R V++I P+K LKL+L YPA+TGRNFDEI+R +DSLQLTA + +ATPA+W+ G  CMILP+VS EDA EKFP
Sbjct:    4 LGQIFPNFEADTTEGPIKFHDWLGDGWGILFSHPADFTPVCTTELGTVAKLVPE---FQKRNVKVIAISCDPVDSHKTWIKDIESYGKLSSFGYPIIADKNRELAVQFGMLDPEEKDKAGLPLTARAVFIIGPDKKLKLSLLYPATTGRNFDEILRVVDSLQLTAYKKVATPANWKNGEKCMILPSVSKEDA-EKFP 196
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BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Match: A0A6A0GX74_HYAAZ (Thioredoxin peroxidase-like 3 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GX74_HYAAZ)

HSP 1 Score: 248 bits (634), Expect = 3.330e-77
Identity = 116/198 (58.59%), Postives = 147/198 (74.24%), Query Frame = 1 
Query:  121 LGDTFPDFEAETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKSRDVKMLAISCDPLDSHQGWLGDIKAHTG-HEVNFPLIADADRSIAASLGMLHPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSLQLTATRSLATPADWQKGGNCMILPTVSAEDATEKFPE 711
            LGD FP+FEAETT G IK HD+LG SWG+L SHP D+TPVCTTELG  A L     +F+ R  K++A+SCD LD H GW+ DIKA+    E  +P+IAD  R++A  LGM+ PD   A G+P T R V+V+ P+K LKL++ YPA+TGRNFDEI+R +DSLQLTAT+ +ATPADW KG  CM+LP+VS +DA + FPE
Sbjct:    4 LGDIFPNFEAETTDGKIKFHDWLGESWGILFSHPRDYTPVCTTELGRAAAL---APQFEKRGCKLIALSCDALDDHHGWIEDIKAYNKLSEFPYPIIADDKRALAVQLGMIDPDEQGADGMPYTCRAVFVVGPDKKLKLSMLYPATTGRNFDEILRALDSLQLTATQKVATPADWTKGSACMVLPSVSPDDAKQLFPE 198
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BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Match: Q2V9X1_HYMPE (Glutathione peroxidase n=1 Tax=Hymeniacidon perlevis TaxID=177573 RepID=Q2V9X1_HYMPE)

HSP 1 Score: 248 bits (633), Expect = 5.200e-77
Identity = 113/198 (57.07%), Postives = 154/198 (77.78%), Query Frame = 1 
Query:  118 LLGDTFPDFEAETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKSRDVKMLAISCDPLDSHQGWLGDIKAHTG-HEVNFPLIADADRSIAASLGMLHPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSLQLTATRSLATPADWQKGGNCMILPTVSAEDATEKFP 708
            +LG+ FP+F A+TT+G I  HD++G SW +L SHPAD+TPVCTTELG  AKL  E   FK R+VK++A+SCD ++SH+GW+GDIK+++   + ++P+I+D  R +A  LGML P     AGLP+T R V+++ P+K LKL+L YPA+TGRNFDEI+R +DSLQLTA + +ATPA+WQ+GG CMILP+VS EDA + FP
Sbjct:    3 VLGEVFPNFSADTTEGKIAFHDFVGDSWAILFSHPADYTPVCTTELGEVAKLIPE---FKKRNVKVIAVSCDDVESHKGWIGDIKSYSKVDDFSYPIISDPKRELAVQLGMLDPAEKDKAGLPLTARAVFIVGPDKKLKLSLLYPATTGRNFDEILRVVDSLQLTAYKKVATPANWQEGGKCMILPSVSKEDADKLFP 197
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BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Match: A0A2R2YWF5_EUPSU (Perxiredoxin-6 n=1 Tax=Euphausia superba TaxID=6819 RepID=A0A2R2YWF5_EUPSU)

HSP 1 Score: 248 bits (632), Expect = 8.670e-77
Identity = 115/220 (52.27%), Postives = 157/220 (71.36%), Query Frame = 1 
Query:  121 LGDTFPDFEAETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKSRDVKMLAISCDPLDSHQGWLGDIKAHTGHEVNFP--LIADADRSIAASLGMLHPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSLQLTATRSLATPADWQKGGNCMILPTVSAEDATEKFPEVKRHVLEVFRLLCSYALTNPQ 774
            LGD FP+F AE+TKG I LHDYLG  WG++ SHPAD+TPVCTTELG  AKL  E   F  R+ K+ A+SCD ++ H GW+ DI+A+   + NFP  ++AD  R +A  LGM+ PD  +A+G+P+T R V++I P+K LKL++ YPA+TGRNFDEI+R +DSLQLTA + +ATPADW++G +CM++P +S E A + FP+ K H +   +    Y  T PQ
Sbjct:    4 LGDVFPNFTAESTKGTIHLHDYLGDKWGIMFSHPADYTPVCTTELGRVAKLTPE---FTKRNCKLQAVSCDSVEDHHGWIKDIQAYNNLDGNFPYPIVADEKRELAVQLGMIDPDEKTASGMPLTARAVFIIGPDKKLKLSILYPATTGRNFDEILRVLDSLQLTAHKKVATPADWKQGSSCMVVPNISKEQAKQMFPQHKVHQVPSGK---EYLRTTPQ 217
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BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Match: M1XMN8_9METZ (Alkyl hydroperoxide reductase n=1 Tax=Sycon ciliatum TaxID=27933 RepID=M1XMN8_9METZ)

HSP 1 Score: 246 bits (628), Expect = 3.030e-76
Identity = 116/199 (58.29%), Postives = 144/199 (72.36%), Query Frame = 1 
Query:  121 LGDTFPDFEAETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKSRDVKMLAISCDPLDSHQGWLGDIKAHTGH--EVNFPLIADADRSIAASLGMLHPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSLQLTATRSLATPADWQKGGNCMILPTVSAEDATEKFPE 711
            LGD FPDF A TTKG I  H +LG SWG+L SHPADFTPVCTTELG   ++N    EF+ R+VK +A+SCDP+D H  W+ DI+A++    +  +P+IAD  R +A   GML PD    AG+P+T R V++I P+K LKL+L YPASTGRNFDEIIR IDSLQLTA + +ATP +WQ GG CM+LP+V  EDA   FPE
Sbjct:    5 LGDVFPDFTANTTKGSISFHSFLGDSWGILFSHPADFTPVCTTELG---RVNQLLAEFEKRNVKPIALSCDPVDKHSDWIKDIQAYSAQSGDWGYPIIADEQRELAVRFGMLDPDEKDKAGMPLTARCVFIIGPDKKLKLSLLYPASTGRNFDEIIRVIDSLQLTAYKKVATPVNWQPGGECMVLPSVKPEDAKTLFPE 200
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BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Match: UPI001B7F3207 (peroxiredoxin-6 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7F3207)

HSP 1 Score: 246 bits (628), Expect = 3.340e-76
Identity = 114/201 (56.72%), Postives = 147/201 (73.13%), Query Frame = 1 
Query:  121 LGDTFPDFEAETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKSRDVKMLAISCDPLDSHQGWLGDIKAHTGHE----VNFPLIADADRSIAASLGMLHPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSLQLTATRSLATPADWQKGGNCMILPTVSAEDATEKFPE 711
            LGDTFP+FEA+TT G IK HD+LG SWGLLCSHPAD+TPVCTTELG  AK+     EF+ R+VK++A+S D +  H GW  DI A+ G      + FP+IAD  R +A  LGML P   +  GLP+T R V+VI P+K LKL++ YPA+TGRNFDEI+R +DSLQLTA + +ATP DW+ GG+CM+LP +  E+A + FP+
Sbjct:    5 LGDTFPNFEADTTAGRIKFHDWLGDSWGLLCSHPADYTPVCTTELGRMAKM---APEFQKRNVKIIALSIDSVQDHHGWTKDINAYIGESTVQNLPFPIIADEKRELAVQLGMLDPAERNKEGLPLTARAVFVIGPDKTLKLSILYPATTGRNFDEILRVVDSLQLTARKKVATPVDWKAGGDCMVLPNIPEEEANKLFPK 202
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BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Match: A0A8B7XWA6_ACAPL (peroxiredoxin-6-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XWA6_ACAPL)

HSP 1 Score: 246 bits (627), Expect = 4.140e-76
Identity = 113/199 (56.78%), Postives = 152/199 (76.38%), Query Frame = 1 
Query:  121 LGDTFPDFEAETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKSRDVKMLAISCDPLDSHQGWLGDIKAHTGH--EVNFPLIADADRSIAASLGMLHPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSLQLTATRSLATPADWQKGGNCMILPTVSAEDATEKFPE 711
            LGDTFP+FEAET+ G IK H++LG SWG+L SHPAD+TPVCTTEL   A L    GEF  R+VKM+A+S D +DSH GW+ DI++++G   E  FP+IAD +R +A   GML PD    AG+P+T R V++I P+K LKL++ YPA+TGRNFDEI+R +DSLQLTAT+ +ATP DW++GG+CM++P+V  E+  + FP+
Sbjct:    4 LGDTFPNFEAETSVGKIKFHEWLGESWGILFSHPADYTPVCTTELSRAASL---AGEFAKRNVKMIALSVDDVDSHVGWIKDIQSYSGQSGEFPFPIIAD-NRDLAVKFGMLDPDERDKAGMPLTARCVFIIGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTATKKVATPVDWKEGGDCMVIPSVKQEEVAQLFPK 198
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BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Match: A0A6P8IU89_ACTTE (peroxiredoxin-6-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IU89_ACTTE)

HSP 1 Score: 246 bits (627), Expect = 4.140e-76
Identity = 109/197 (55.33%), Postives = 150/197 (76.14%), Query Frame = 1 
Query:  121 LGDTFPDFEAETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKSRDVKMLAISCDPLDSHQGWLGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSLQLTATRSLATPADWQKGGNCMILPTVSAEDATEKFPE 711
            LGD FPDF+AE++ GPI+ H ++  +W ++ SHPAD+TPVCTTELG  A+L    GEFK R VKM+A+SCD ++SH+GW+ DI A++G    + ++AD  R +A  LGM+ PD   A GLP+T R V++I P+K LKL++ YPA+TGRNF+EI+R IDSLQLTAT+ +ATP DW+ G +CM+LP+VS EDA + FP+
Sbjct:    4 LGDIFPDFKAESSDGPIQFHQFIEGTWAIMFSHPADYTPVCTTELGRVAQL---AGEFKKRGVKMIALSCDDVESHKGWIKDINAYSGEGFPYSILADPKRELAVQLGMVDPDEKDAKGLPLTCRAVFIIGPDKKLKLSILYPATTGRNFNEILRVIDSLQLTATKKVATPVDWKSGEDCMVLPSVSQEDAVKLFPK 197
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1662.4475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHH9_ECTSI6.630e-13792.79Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
UPI0018F6C1541.050e-7757.71peroxiredoxin-6 n=2 Tax=Scyliorhinus canicula TaxI... [more]
Q966Y9_SUBDO1.260e-7760.41Glutathione peroxidase n=1 Tax=Suberites domuncula... [more]
A0A6A0GX74_HYAAZ3.330e-7758.59Thioredoxin peroxidase-like 3 n=1 Tax=Hyalella azt... [more]
Q2V9X1_HYMPE5.200e-7757.07Glutathione peroxidase n=1 Tax=Hymeniacidon perlev... [more]
A0A2R2YWF5_EUPSU8.670e-7752.27Perxiredoxin-6 n=1 Tax=Euphausia superba TaxID=681... [more]
M1XMN8_9METZ3.030e-7658.29Alkyl hydroperoxide reductase n=1 Tax=Sycon ciliat... [more]
UPI001B7F32073.340e-7656.72peroxiredoxin-6 n=1 Tax=Carcharodon carcharias Tax... [more]
A0A8B7XWA6_ACAPL4.140e-7656.78peroxiredoxin-6-like n=1 Tax=Acanthaster planci Ta... [more]
A0A6P8IU89_ACTTE4.140e-7655.33peroxiredoxin-6-like n=1 Tax=Actinia tenebrosa Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1662contigL-elsbetiae_contig1662:6547..11987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score241.5
Seed ortholog evalue4.9e-61
Seed eggNOG ortholog10224.XP_002733706.1
Preferred namePRDX6
KEGG rclassRC00034
KEGG koko:K11188
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
Hectar predicted targeting categorymitochondrion
GOsGO:0000302,GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004601,GO:0004602,GO:0004620,GO:0004623,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009395,GO:0009636,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016042,GO:0016043,GO:0016192,GO:0016209,GO:0016298,GO:0016491,GO:0016684,GO:0016787,GO:0016788,GO:0016999,GO:0017001,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019899,GO:0022607,GO:0030030,GO:0030031,GO:0030141,GO:0031323,GO:0031325,GO:0031410,GO:0031625,GO:0031974,GO:0031982,GO:0031983,GO:0032060,GO:0032940,GO:0033120,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042221,GO:0042582,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043484,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045935,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0046903,GO:0046983,GO:0047499,GO:0048024,GO:0048026,GO:0048471,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051252,GO:0051254,GO:0051716,GO:0052689,GO:0055114,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0071840,GO:0072593,GO:0080090,GO:0097237,GO:0097708,GO:0098754,GO:0098869,GO:0099503,GO:0120031,GO:0120036,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990748
EggNOG free text desc.peroxiredoxin activity
EggNOG OGs38CN4@33154,3BBQ4@33208,3CW2U@33213,COG0450@1,KOG0854@2759
EC1.11.1.15,1.11.1.7
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionGlutathione peroxidase
Ec32 orthologEc-11_004010.1
Exons7
Model size1349
Cds size876
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1662.4475.1prot_L-elsbetiae_contig1662.4475.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1662 7020..11987 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.2173417-UTR-L-elsbetiae_contig1662:6546..70191622815690.2173417-UTR-L-elsbetiae_contig1662:6546..7019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1662 6547..7019 -
1691683040.102235-UTR-L-elsbetiae_contig1662:6546..70191691683040.102235-UTR-L-elsbetiae_contig1662:6546..7019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1662 6547..7019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.2313378-CDS-L-elsbetiae_contig1662:7019..73191622815690.2313378-CDS-L-elsbetiae_contig1662:7019..7319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 7020..7319 -
1691683040.1129339-CDS-L-elsbetiae_contig1662:7019..73191691683040.1129339-CDS-L-elsbetiae_contig1662:7019..7319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 7020..7319 -
1622815690.2413805-CDS-L-elsbetiae_contig1662:8100..82511622815690.2413805-CDS-L-elsbetiae_contig1662:8100..8251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 8101..8251 -
1691683040.1242414-CDS-L-elsbetiae_contig1662:8100..82511691683040.1242414-CDS-L-elsbetiae_contig1662:8100..8251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 8101..8251 -
1622815690.2512772-CDS-L-elsbetiae_contig1662:8596..86701622815690.2512772-CDS-L-elsbetiae_contig1662:8596..8670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 8597..8670 -
1691683040.132158-CDS-L-elsbetiae_contig1662:8596..86701691683040.132158-CDS-L-elsbetiae_contig1662:8596..8670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 8597..8670 -
1622815690.2606053-CDS-L-elsbetiae_contig1662:9077..91451622815690.2606053-CDS-L-elsbetiae_contig1662:9077..9145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 9078..9145 -
1691683040.140571-CDS-L-elsbetiae_contig1662:9077..91451691683040.140571-CDS-L-elsbetiae_contig1662:9077..9145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 9078..9145 -
1622815690.2704287-CDS-L-elsbetiae_contig1662:9611..96571622815690.2704287-CDS-L-elsbetiae_contig1662:9611..9657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 9612..9657 -
1691683040.1489556-CDS-L-elsbetiae_contig1662:9611..96571691683040.1489556-CDS-L-elsbetiae_contig1662:9611..9657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 9612..9657 -
1622815690.280079-CDS-L-elsbetiae_contig1662:9914..99891622815690.280079-CDS-L-elsbetiae_contig1662:9914..9989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 9915..9989 -
1691683040.1591518-CDS-L-elsbetiae_contig1662:9914..99891691683040.1591518-CDS-L-elsbetiae_contig1662:9914..9989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 9915..9989 -
1622815690.2896516-CDS-L-elsbetiae_contig1662:11825..119871622815690.2896516-CDS-L-elsbetiae_contig1662:11825..11987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 11826..11987 -
1691683040.1704419-CDS-L-elsbetiae_contig1662:11825..119871691683040.1704419-CDS-L-elsbetiae_contig1662:11825..11987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1662 11826..11987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1662.4475.1

>prot_L-elsbetiae_contig1662.4475.1 ID=prot_L-elsbetiae_contig1662.4475.1|Name=mRNA_L-elsbetiae_contig1662.4475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=292bp
MFSTLCRRSALATKSSLFSRKALPSSCAKKTMSSKPVALLLGDTFPDFEA
ETTKGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFKS
RDVKMLAISCDPLDSHQGWLGDIKAHTGHEVNFPLIADADRSIAASLGML
HPDHMSAAGLPMTVRTVYVISPEKVLKLALTYPASTGRNFDEIIRTIDSL
QLTATRSLATPADWQKGGNCMILPTVSAEDATEKFPEVKRHVLEVFRLLC
SYALTNPQYKHVCLKIRQPMTGGSTGILRRMTTDNSSEGTG*
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mRNA from alignment at L-elsbetiae_contig1662:6547..11987-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1662.4475.1 ID=mRNA_L-elsbetiae_contig1662.4475.1|Name=mRNA_L-elsbetiae_contig1662.4475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5441bp|location=Sequence derived from alignment at L-elsbetiae_contig1662:6547..11987- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTCTACTCTGTGTCGGAGGTCTGCACTCGCCACCAAGTCATCTCT
CTTCAGCCGGAAAGCTCTTCCTTCCTCGTGCGCAAAGAAAACCATGTCTT
CGAAACCTGTTGCCCTTCTCTTGGGGGACACGTTCCCTGATTTCGAGGCC
GAAACAACGAAGGTGAGTTTAGAGGACAAAATAACACCCTGTTCTCTCGC
GGACAAAATTGGTACACATGCCCAGCACGACGTACGGCACCGCCGTGGCT
TGAACTGACCATGCATGCTGGTCGGTGAAATCTCGCACGGCTGTGTAGGT
ACGCGCAACTCACCAAGTCACCGGCAGGATAGCAGATCCGTTGTTCCGCG
GACACATGCCCACGCACATTTTTGTCCGTGAACTTCGGCATAAACTTGAT
TCAATGTTGTGTCGATTGCCAAAGTGGGAAAGGAAAAGGTTCTATCTAGA
CTGTATTTACATGCGAAAATACACCGCGAGTACATCTGGGATCATATAAA
TAGCTGGCATGTGCTCTGTCTCTTCCTCGCATGTTAGATACAAGATATGT
GTGTGCATGATGCGCTGTCGATGCGGATGGCTGTGTTGTTCCGTTGCCCC
GCAAATTTAGCCGGCGGTGGTTGGTGACGGTGATCTTAATCATGGGGTTG
CCGATAACGTGGTTCGGCCGTTATGTGTGGTCTAGACGGGGTTTCCTGCG
CTCATGCCTGGGTGCGTGGCTCGGGTGCAAACATCGGTGAATTGATTACA
TAATTCCTTCATTCTTGAACACGTGCCGCCGCCGTATTTACCCTGTACCC
GGGGGCTTCTTTCGTTGTAGGTATATCAACCTGCACCCACCGGAGGAGTG
ATTTTTGTCAAGGGGTTATGTTGTGTCTGTTTGTTGTTTGTTTGCTTGTT
TGTATTCTCGACCTGCGTCGTATCCTGTCCGAGAGTATGTTATTTTATTT
TATTTTATTTTATCCCCTGTTGGTGGGCGGTATAATCGCGGGGAGGACTA
TGTAGACCTGTGCCGGCCTGGCCGGCGAAAACCCGGCGCGGAACCCCCCG
GCTTTGTTGGGGTACCAAGATAGTGGTGTTGGCTGTTCCAGTTTTGGTTT
TACCTCACATAGCGTGTAGAGGGGAGCGGAGGGCTCCAGATTCGATATCT
GTTTTATTATTGCTTTGCTGAACCCTCGGGTCCATTTTATTTTTCGTGTA
CCTTTTCTTGGGTATAAGTTAGCCTGTGACCACGGGAATTGACCGCATCA
AGTGTTGGATTAGTACGGAAATTGAGAGGTACTGGATGGAGAGATCGGAA
CGGTTTTTAATGTGAAGACAACATACATATGTACATACATACACACACAC
ACGGACGTTGAAAATATAAAAACTAAATTTATGCAAAGACACCCCCCGTA
TTCCTCCGAGGAGAGCCCCTGTTCCCAAAAGCCAGGAACGGATGCTGACC
ACCTGTGATACCCCGGCTAGGAAATATGGATTCTGGCTGATGAATCTGAT
GTCGTCACCCCGCAATCTCGATTGGAAGAGGCCGATGTTTAGAGCCTTTC
CTCCCCCTCGGAAATCCAAGGCCAGAAAAGGTCGCGGCTTCGCCACTCCG
CGACTCATTTTTGATCTGAACTTCGCTGTCGAGGTAGATGCAGTTCTTGT
GAGGTTGACGCTGGGTTGGAGCTCCATGTAGGCGTCTATTTCCTCCAAGG
TGCGCGTGTATACCTCCCCCCCACCCCCACCCCCCCCCCCCCCCCCCCCC
CACCCCCACCCTCACCCGCCTCCAGCACCCACCCGACAAACCCNNNNNNN
NNNTTTCGTTTTGGTTCTTTTGTTGTGTTGTCTCGAGCATTTGATTGTTT
TTTTCTTACCAACACCCACCGCTCGTCTCCCCCCCCCCCCCCCCCCCCCC
CTCCCAGATATACAAAACACCAAAGTGGTTTTACCGCCATCTGCTGTTGA
ATCCTCTGATTTTTTGTGGCTGCTGGGCTTGTCATTTGTTCACTGCAGGG
CCCGATCAAGCTCCACGACTACCTTGGATCCTCCTGGGGACTTCTCTGCT
CGCACCCGGCCGACTTCACGCCGGTAGGCAACACGTAGTACCAAACTAGA
ACCGCGTGGACCGGTGGTGTTTTTGCCGCCGCAGAAGTGTTTTTGTAACG
TTCTTCTGGTGCCGCTTTACAGGCAACACGCAAGACCAACACACAATATT
TGCCGCCGCAAGCAGCATGAACATTTTTTTCGTGTCTGGCACAAGAGTAG
TAGACTGCCTCCACCCCCGCCTACCCCCTCCCCCCGGACATCGTCGTAAC
AATTCCGCGCCCCGCCGCTTGCTCTGTTAGGTATGCACTACTGAGCTGGG
CACGTGCGCGAAACTCAATGTTGAAGGTCAGAGCCCGCTCGCTGCAGCTG
TTGCTGCGGCTTTGTTTGGATGTTTCGCGGCTTGTTTGTTCTGTTGCTGG
CGCTGCTACTGCATTCCATTTTGCCCGCAGCACGCAGGACTGAAGGGGCT
TCCTCCAGACAGACAGACAGACAGACAGATAGCAGTCTGCGTAAAGCGCC
CTTGTTTTTATGTTCGTTACATAGCCCAAAAGTGCAGCGATTTCAACCAC
AGTGTTTTGTTTTGCTTTCGGTTGCTTGTTAGCAGTTTCGGATCAGCGGT
TGCCCGGAGAGACGGAAAGAAACACCACCACCCAAAAACGAGAGCCAAAA
AAACAAAATTGCAGCAAGCTCTCGTTTTGAGGTGGTCCACCATCGTCTGT
TGTGTGCCCGCAGTGCTTCGGGACGAACTGGAAGCTTTTGGTTCGTTTGG
AGATTCACGACTTCGTTCTGTCTCGTTGTTTTCCCGTTTCAGGCGGCGAG
TTTAAGTCGCGCGACGTGAAGATGCTGGCCATCTCGTGCGACCCGTTGGA
TTCTCACCAGGTTCGATACATGCTGCTGCTGCTGGGGGTGCTTCGATTTT
ATCTACTGCCCTTGGAAATAAGAGTTTGCCACAAAGCAGACTCACAGAGC
TGTCTCATGTACAATATGGTCGGTGTTGATACATACGGAGATGAAGACGA
CGATGACGTTTTTGTGTATGCCGTCCCCGCTATATTCCAGCATATCCGCG
TGGTTGCTTCTCTTCCGCGAGCGAGGCGCCGCGTTGATCGAGAGATAATC
GGCGCGGAAAATGTCCGGCGTATGTATAGCCTGTGGGCGTGAGAGAGGTC
ATACGGCTGGTCTCATTGAATTATTGACCCCAAGCTAGAGGCTGCAGGGA
TGCAGCCGCGGCGTAGCGTTCCGACAGCACCAACACGTTCTTCCCAACCA
TGTTTTGCGATTAATAGGGGTGGCTCGGGGACATCAAGGCGCACACCGGA
CACGAGGTTAATTTCCCGCTCATCGCGGACGCCGACCGCAGGTGAAACCA
CACGGAGATTTTTTTTTAATATGTGACGTGCTTTTTACTTTTGAATCTTG
CATGTGTCGCCGTTTCATTGCACTGACGTCCGTTCCAATGGTACATGTGC
ATGCGGCATATAATGTGTCTCTCCATCAACGGGAAAAAAGGCAACTTGAG
CCGTAAGATCCCGTTGTCGGTGGAAAGATCCAATTCTTGACTATTTTGTA
TTTTCCTTTCACGCCTGCTGTGACGTCGGCCGACGCACGGTTCCCGAGAT
GGCTGGCTACTGTTGCGTACGTAAGATGGACGACTGTTTGTCACGTTCCT
CATATGTAACTATTCTTTGTGTGCCGAAACATGCAGCATCGCGGCTTCCC
TGGGCATGCTGCACCCAGACCACATGAGCGCGGCGGGACTTCCCATGACC
GTCCGCACCGTGTACGTTATTAGCCCGGAGAAGGTGCTGAAGCTAGCGCT
CACGTACCCCGCCTCTACCGGCCGGAACTTCGACGAGGTTCGTGCCGAAA
CAGTGCAAAAACCGTGCCATATGTACACTATGTAGCTGGTGAAGGCAGCT
GGTGAAGGCAAAACTGTAAATACCCCCAATGGTTATTGTAAGAGTAGATA
CTGCTGTGTACGGATGGGGGCAAAGCTACTATTGTCATCGGGTTGGCGCG
GAAAAAAGCCACAGTTAAGACGGAACATTGGGTGCGGGGCGCTTGAGATA
ATGCTCCAAGTTGGCATCAGGGAGGAAGTGAGGGGGTTCGACATGACGGG
TGAAGCAACTAGCGAATGCACTTGGGGTACTATCCACCCCGTACATGTAC
ACAAGGAGGTATATCCAACGTTGGAATGCTTCGTGTAACTTAGAGCTGGA
CAGCAGTACATGGTGGGTAGTTTTTCTTGCTAAATAGACGCGTTATGTAC
AGGCGTTGTGCTAGTCTTGATTTGAGTTGGCAGGCGGGCAATATTTTTTC
AGTTGAAAGCATGCATTTCGCGACTTCTTATCATCTTGTACCCTATCGGG
GATGGATGGGCCAAGGGGAGAGAGGAACCCTTCTGGTGTGAACTCGAATC
ACAGCGATGGTCGGAGAAAAGGACTCAACCAGCGCCGGTAGGGTGCCGGC
GCTACAGGCGACGGCAACACACGGAACAATATTGTTGGGTTGTACTTTTC
TACATACATGCATGCGCACACGAGCTGTGACCACCGCGGCAGGTACGGAA
AGAGAGGAACACTGTTCTTACGCCCCCCTCCACCCCTTGCCTGCACCGCC
GCGATCATTTTTTGTAAGATCATCCGCACGATCGATTCCCTCCAGCTTAC
CGCTACACGCAGCCTCGCCACCCCCGCCGACTGGCAGAAGGGTGGCAACT
GCATGATTTTGCCGACGGTCAGCGCCGAGGACGCCACCGAGAAGTTCCCG
GAGGTGAAGCGACATGTTCTCGAAGTTTTTAGGCTGTTGTGCTCGTACGC
CCTAACTAACCCACAGTATAAACATGTGTGCCTAAAGATACGTCAGCCTA
TGACCGGGGGATCGACTGGCATCCTGCGTCGGATGACCACGGACAACAGC
AGTGAAGGTACTGGGTAAAGAGATCGGAGCGGTTTTATTCATGCGAAGGA
AGAAAAAAGACGCCCGCTCTTGAGCCAGCGACTTTCCCCATTTCGCAGCC
CCGAGGCCCGAGAACGGCAATACAGTCAGCTCAGGAGCCGCAGAAAGAAA
GCATCAGCGATCGCATGCATTTATGTATCATGCATTTCGCGTTTTTGAGA
CTCCAAAAAAATAATGTCGCGCAACAGAGGCCTGGATCATGAAAGAAGAG
GGTGGTACCACCAAAGCTGAAAAGACACGGCCAACGAATCTCCCTCATGG
CACCGCTTTGACTTTGTTGGGTTGATTTGATGCACCTTTCATCAATGCAC
CAAGCACTGCCGTTATGCCAAGCTGTTATGAGAATGGCATATCGCCACCC
TTAGCACGGAGTTTTAACCCCCCCCCCTCCCCTTGCTCCGACCGCTTCCA
CGTTTAATTACTTCAGCACAAGACGATGGACGTGCCATCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1662:6547..11987-

>mRNA_L-elsbetiae_contig1662.4475.1 ID=mRNA_L-elsbetiae_contig1662.4475.1|Name=mRNA_L-elsbetiae_contig1662.4475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1752bp|location=Sequence derived from alignment at L-elsbetiae_contig1662:6547..11987- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTCTACTCTGTGTCGGAGGTCTGCACTCGCCACCAAGTCATCTCT
CTTCAGCCGGAAAGCTCTTCCTTCCTCGTGCGCAAAGAAAACCATGTCTT
CGAAACCTGTTGCCCTTCTCTTGGGGGACACGTTCCCTGATTTCGAGGCC
GAAACAACGAAGATGTTCTCTACTCTGTGTCGGAGGTCTGCACTCGCCAC
CAAGTCATCTCTCTTCAGCCGGAAAGCTCTTCCTTCCTCGTGCGCAAAGA
AAACCATGTCTTCGAAACCTGTTGCCCTTCTCTTGGGGGACACGTTCCCT
GATTTCGAGGCCGAAACAACGAAGGGCCCGATCAAGCTCCACGACTACCT
TGGATCCTCCTGGGGACTTCTCTGCTCGCACCCGGCCGACTTCACGCCGG
GCCCGATCAAGCTCCACGACTACCTTGGATCCTCCTGGGGACTTCTCTGC
TCGCACCCGGCCGACTTCACGCCGGTATGCACTACTGAGCTGGGCACGTG
CGCGAAACTCAATGTTGAAGGTATGCACTACTGAGCTGGGCACGTGCGCG
AAACTCAATGTTGAAGGCGGCGAGTTTAAGTCGCGCGACGTGAAGATGCT
GGCCATCTCGTGCGACCCGTTGGATTCTCACCAGGCGGCGAGTTTAAGTC
GCGCGACGTGAAGATGCTGGCCATCTCGTGCGACCCGTTGGATTCTCACC
AGGGGTGGCTCGGGGACATCAAGGCGCACACCGGACACGAGGTTAATTTC
CCGCTCATCGCGGACGCCGACCGCAGGGGTGGCTCGGGGACATCAAGGCG
CACACCGGACACGAGGTTAATTTCCCGCTCATCGCGGACGCCGACCGCAG
CATCGCGGCTTCCCTGGGCATGCTGCACCCAGACCACATGAGCGCGGCGG
GACTTCCCATGACCGTCCGCACCGTGTACGTTATTAGCCCGGAGAAGGTG
CTGAAGCTAGCGCTCACGTACCCCGCCTCTACCGGCCGGAACTTCGACGA
GCATCGCGGCTTCCCTGGGCATGCTGCACCCAGACCACATGAGCGCGGCG
GGACTTCCCATGACCGTCCGCACCGTGTACGTTATTAGCCCGGAGAAGGT
GCTGAAGCTAGCGCTCACGTACCCCGCCTCTACCGGCCGGAACTTCGACG
AGATCATCCGCACGATCGATTCCCTCCAGCTTACCGCTACACGCAGCCTC
GCCACCCCCGCCGACTGGCAGAAGGGTGGCAACTGCATGATTTTGCCGAC
GGTCAGCGCCGAGGACGCCACCGAGAAGTTCCCGGAGGTGAAGCGACATG
TTCTCGAAGTTTTTAGGCTGTTGTGCTCGTACGCCCTAACTAACCCACAG
TATAAACATGTGTGCCTAAAGATACGTCAGCCTATGACCGGGGGATCGAC
TGGCATCCTGCGTCGGATGACCACGGACAACAGCAGTGAAGGTACTGGGT
AAATCATCCGCACGATCGATTCCCTCCAGCTTACCGCTACACGCAGCCTC
GCCACCCCCGCCGACTGGCAGAAGGGTGGCAACTGCATGATTTTGCCGAC
GGTCAGCGCCGAGGACGCCACCGAGAAGTTCCCGGAGGTGAAGCGACATG
TTCTCGAAGTTTTTAGGCTGTTGTGCTCGTACGCCCTAACTAACCCACAG
TATAAACATGTGTGCCTAAAGATACGTCAGCCTATGACCGGGGGATCGAC
TGGCATCCTGCGTCGGATGACCACGGACAACAGCAGTGAAGGTACTGGGT
AA
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