mRNA_L-elsbetiae_contig1660.4465.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1660.4465.1
Unique NamemRNA_L-elsbetiae_contig1660.4465.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1660.4465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1660contigL-elsbetiae_contig1660:15372..18744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons6
Model size1638
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1660.4465.1prot_L-elsbetiae_contig1660.4465.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1660 15589..17821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.4631793-UTR-L-elsbetiae_contig1660:15371..155881622815689.4631793-UTR-L-elsbetiae_contig1660:15371..15588Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1660 15372..15588 -
1691683039.6954718-UTR-L-elsbetiae_contig1660:15371..155881691683039.6954718-UTR-L-elsbetiae_contig1660:15371..15588Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1660 15372..15588 -
1622815689.5377038-UTR-L-elsbetiae_contig1660:17821..179611622815689.5377038-UTR-L-elsbetiae_contig1660:17821..17961Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1660 17822..17961 -
1691683039.7599123-UTR-L-elsbetiae_contig1660:17821..179611691683039.7599123-UTR-L-elsbetiae_contig1660:17821..17961Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1660 17822..17961 -
1622815689.5475671-UTR-L-elsbetiae_contig1660:18321..187441622815689.5475671-UTR-L-elsbetiae_contig1660:18321..18744Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1660 18322..18744 -
1691683039.769396-UTR-L-elsbetiae_contig1660:18321..187441691683039.769396-UTR-L-elsbetiae_contig1660:18321..18744Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1660 18322..18744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.4753342-CDS-L-elsbetiae_contig1660:15588..157881622815689.4753342-CDS-L-elsbetiae_contig1660:15588..15788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1660 15589..15788 -
1691683039.7086558-CDS-L-elsbetiae_contig1660:15588..157881691683039.7086558-CDS-L-elsbetiae_contig1660:15588..15788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1660 15589..15788 -
1622815689.4880962-CDS-L-elsbetiae_contig1660:16103..163191622815689.4880962-CDS-L-elsbetiae_contig1660:16103..16319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1660 16104..16319 -
1691683039.7172148-CDS-L-elsbetiae_contig1660:16103..163191691683039.7172148-CDS-L-elsbetiae_contig1660:16103..16319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1660 16104..16319 -
1622815689.501297-CDS-L-elsbetiae_contig1660:16764..169301622815689.501297-CDS-L-elsbetiae_contig1660:16764..16930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1660 16765..16930 -
1691683039.728057-CDS-L-elsbetiae_contig1660:16764..169301691683039.728057-CDS-L-elsbetiae_contig1660:16764..16930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1660 16765..16930 -
1622815689.5172682-CDS-L-elsbetiae_contig1660:17279..174791622815689.5172682-CDS-L-elsbetiae_contig1660:17279..17479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1660 17280..17479 -
1691683039.7364597-CDS-L-elsbetiae_contig1660:17279..174791691683039.7364597-CDS-L-elsbetiae_contig1660:17279..17479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1660 17280..17479 -
1622815689.527956-CDS-L-elsbetiae_contig1660:17745..178211622815689.527956-CDS-L-elsbetiae_contig1660:17745..17821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1660 17746..17821 -
1691683039.747233-CDS-L-elsbetiae_contig1660:17745..178211691683039.747233-CDS-L-elsbetiae_contig1660:17745..17821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1660 17746..17821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1660.4465.1

>prot_L-elsbetiae_contig1660.4465.1 ID=prot_L-elsbetiae_contig1660.4465.1|Name=mRNA_L-elsbetiae_contig1660.4465.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=286bp
MIAYAVFQLGAAVLAYFVVEEWEDLVNAEDDNGITFIEFGLTFWIVVAGL
IPALFTSMFLLVKARHAGDGPFYGAGRLWVTSGFAWVVWALAVTATAHDG
WLLLHIGDAPTFDGGVGPGGLDALENCEIIGEIEFDGANEFNLACDYYRG
FSATQFAATITCSVVVALLALAAFRPAVARCASVKSLAIAGGIILIVYVV
LQLGAAVLAHFLAKEWERIYNEVLQDETIFELEFGPTFWMSVAGLVLAVI
VSCNLFANAKHAEDGPFYGGTCGVKDGEGNRHGNV*
back to top

mRNA from alignment at L-elsbetiae_contig1660:15372..18744-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1660.4465.1 ID=mRNA_L-elsbetiae_contig1660.4465.1|Name=mRNA_L-elsbetiae_contig1660.4465.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3373bp|location=Sequence derived from alignment at L-elsbetiae_contig1660:15372..18744- (Laminarionema elsbetiae ELsaHSoW15)
TGGGTTGCCGCTGGATTCGCGTGGGCAGTCTGGGCGCTTGCGGCAAAAAA
TCTCGCCGGGATGTCCACCTCTCTCTGCACGGGTACTACTTAATGTAGAC
TTTGTAGACTATGTATGTCTATCTTCATTGAAGCCTCGAGCAATTACTCT
GTCCCCGCCGTGCTCCTGAATCAGCAACAGGTCTGCGTACTACTGTATAT
CTAGATGTATGTCAAGATACGTCTGCTGGTGACTGATCTCACAACTGGTG
CGCGCGACGTGTTCTCCGTCCTTTGTTTCAGGTGACTGCAGCAGCTCATG
ATGAATGGCTGATTGTTGGCGACGATGAAGACGACATTGGGTTCGGGGCC
GGAAGCGAAGTGCTCCTGTACTTGTGCGACGATGGTGGTTTTTTCGACGA
CGATTTTGACTTCTGCGGCCTTTGTGAGTCAACCATGTCGCTGATGTTTT
TTTGTTTGTGAGTCAACCATGTCGCTGATGTTTTTTTGTACCGCCGACTA
CATAGACTACATACCTGCATATCTGTCGATAGAAAGAAAATACATAATTT
GTATGTGTGGGTCGTTTGTTGTCAAGACTAATATCTATTGTACTCCAGGA
GTACATAATAAACAAATAACAACAGCAGCAGTAGTAACTCGCCCGAAATT
GGTGGACAAACGCTTTGCTGCTGTTGGTACAATGTAGATCTACATGTGTA
CGTGTGCCGGAAAGCTCCGCTGCGAACCCTGCATGTTCTGTGTGCTCATT
TTCCAGGCCTTTTTTCGATTCAACCGCTGACAGACCGTGGGTTTACAGCG
ACGCAGTTCGCGGCCACAGTGACATGTTCAATTGCGGTTGCTCTCCTGGC
GCTAGCGGCATTCCGGCCAGCTGTGGCGGGGTGCGCGTCGGTGAAGTCTC
TGGCGAATGCCGGCGGCATTATAATGATTGCGTATGCCGTGTTTCAGCTC
GGGGCTGCAGTGCTGGCGTATTTCGTCGTGGAGGAGTGGGAGGATCTCGG
TGCGTACAACAACCAATGTCGGGTATTTCAATGCGTTGCTGCACGGACGG
CACGTCGAGTAGTCGAAGGTTCAACATGTTTCCAATCTTGCTGAGAGTCG
TATTTGCTCCGGTTGGGATTGTCCCCGCTGATGCGAGAGTCCCATTCATT
ACCGGCCCTAAACTCACCCGATGTTACGCAACACCGCTCTCCTCCGGGTG
AGGCACACGATACCCCACAAATACTCAACCAACACCGGTTCCTTCGTCGT
TCGCCTTTTCTGCAGTAAACGCCGAGGACGATAACGGAATCACCTTCATC
GAGTTCGGGCTAACATTCTGGATCGTTGTAGCCGGGTTGATACCTGCGCT
GTTCACGTCGATGTTTCTTCTTGTGAAGGCAAGGCATGCCGGTGACGGGC
CGTTCTACGGCGCAGGTCGCCTTTGGGTTACTTCTGGCTTCGCGTGGGTT
GTCTGGGCGCTCGCGGTGAGAAATCGCGGGCGAAGTTAGTTCGTGGAACT
GATGGGTTTCCGTCGGCCTGTTGGCTCCGTCTTCATCTCACGAGAACCCC
CGCTACACATCCGCTGCGAACCCTCACGTATTGCGTTTAGCTGCGGGTGC
CTGCCTTCCGTACCCCTCGTACTGATGGAAACCAATACTGCTTGTGCTAC
TCCGCCCTGAAGGTTCGTGTATAGCCGCGCTCTCCAGGTACGCCAATCTT
GCAAATTCGCTCTTAACCATTGAGAGCAACATCAGAAGGTGCCGATTTCT
TGACTGCTGAAGGTATGAACTATTTCTCCCTATGCACGCCGAAATGTGTC
ATCCGCTGTGATAGGTAACTGCAACGGCTCACGATGGATGGCTTCTTCTC
CATATTGGAGATGCTCCTACCTTCGACGGCGGGGTCGGGCCCGGAGGTCT
CGACGCCTTAGAAAATTGTGAAATAATTGGCGAGATCGAATTCGACGGTG
CCAACGAGTTCAATCTGGCGTGCGATTATTGTGAGTCTACACTCAAGTAT
CTAGTATGCTCTTGTCCTGTCCAATATCATACTAGTCGGATGTTTATGTT
TGCTGGTTTTTGCCTTCCTTCAGGAGCTTTTTACACCTGGTGTGCTACTG
TACAAGGAGGCGCATCTTTGCGCAGGAAGCCATAGCTTTTCAGGCCAAGC
GCGGGTCGGCTCTTACTATGGAGACTCAAAATATAGTTCCAGGCGCGGGT
TGGCTCTTACTATGCAGACTCAAAACATAATTAGCTCTCAACAGACTGGC
TTGTCACAAAGTCGGTGCCCGCTTTCGATTTACCAGATGTCGGCAAAGCA
CCCCCATGCTACATGCAGTACAGGTGGTCTATCCGTGTGACTAGCATCGC
CGAAACGCGTCACCTTGCCTAAACATATTTCCTCGTCCTGCATGCCTGTT
TCTCTCCGGATCCAACCGCTGACAGACCGCGGGTTTTCGGCGACGCAATT
CGCGGCCACGATCACGTGTTCAGTCGTGGTTGCTCTCCTGGCGCTAGCGG
CATTCCGGCCAGCTGTGGCGAGGTGCGCGTCGGTGAAGTCTCTGGCGATC
GCCGGCGGCATTATACTGATTGTGTACGTCGTGTTGCAGCTCGGGGCTGC
AGTGCTGGCGCATTTCCTGGCGAAGGAGTGGGAGCGCATCTGTGAGTACA
CTAGCCGATGTCAGGAGTCTGTTGTTTTGCTGCACGAACGGCTGGATAGG
ACATCCGGCGTTTGAGAAATACCAGTTTGGGTCATGGAATGTAAATCTTG
CAAATGACTCTTTAGTCCCTTTTTCACTGCGCCCTATTGAGGTGAGGTGG
CCTCGCTTACAACAAGATGTACCTCTCTTTTGAGTGGGATGTTTTCTCGG
CGAAGCTGGTACTACCCGTTTCATTGCGCACTGCCGCTGATGCAGTTAAA
GACGTTCGGACTATGTACAAAACCCTGCTGTCCCGCGTGTGCCGGCGACA
CTCCAGACAACGAAGTACTCCAGGACGAGACGATATTTGAGCTTGAGTTC
GGGCCAACGTTCTGGATGAGTGTGGCCGGGCTTGTTCTAGCGGTGATTGT
ATCGTGCAATCTCTTTGCAAATGCCAAGCATGCCGAAGATGGACCTTTCT
ACGGCGGCACCTGTGGTGTTAAAGACGGAGAAGGCAACAGGCATGGCAAC
GTATAGAAAGAGCAGAAGAATGGACCCACATCAAGGATGACGTGGAGATT
GAAGGCAACAATGCCTTGTGAAAGACGGCCACATACATTTGCAGTACATA
TATCAATGGGGAGCGAGATGAAGGAGACAGAGAGTGTGTCATTTATTTGG
CGTTTCAGCAGGCCACGGGTGTATGTACGATAACTGCGCTGTAGGAAATT
CCGAATAGGAAGGACAGCTTGAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1660:15372..18744-

>mRNA_L-elsbetiae_contig1660.4465.1 ID=mRNA_L-elsbetiae_contig1660.4465.1|Name=mRNA_L-elsbetiae_contig1660.4465.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1716bp|location=Sequence derived from alignment at L-elsbetiae_contig1660:15372..18744- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTGCGTATGCCGTGTTTCAGCTCGGGGCTGCAGTGCTGGCGTATTT
CGTCGTGGAGGAGTGGGAGGATCTCGATGATTGCGTATGCCGTGTTTCAG
CTCGGGGCTGCAGTGCTGGCGTATTTCGTCGTGGAGGAGTGGGAGGATCT
CGTAAACGCCGAGGACGATAACGGAATCACCTTCATCGAGTTCGGGCTAA
CATTCTGGATCGTTGTAGCCGGGTTGATACCTGCGCTGTTCACGTCGATG
TTTCTTCTTGTGAAGGCAAGGCATGCCGGTGACGGGCCGTTCTACGGCGC
AGGTCGCCTTTGGGTTACTTCTGGCTTCGCGTGGGTTGTCTGGGCGCTCG
CGTAAACGCCGAGGACGATAACGGAATCACCTTCATCGAGTTCGGGCTAA
CATTCTGGATCGTTGTAGCCGGGTTGATACCTGCGCTGTTCACGTCGATG
TTTCTTCTTGTGAAGGCAAGGCATGCCGGTGACGGGCCGTTCTACGGCGC
AGGTCGCCTTTGGGTTACTTCTGGCTTCGCGTGGGTTGTCTGGGCGCTCG
CGGTAACTGCAACGGCTCACGATGGATGGCTTCTTCTCCATATTGGAGAT
GCTCCTACCTTCGACGGCGGGGTCGGGCCCGGAGGTCTCGACGCCTTAGA
AAATTGTGAAATAATTGGCGAGATCGAATTCGACGGTGCCAACGAGTTCA
ATCTGGCGTGCGATTATTGTAACTGCAACGGCTCACGATGGATGGCTTCT
TCTCCATATTGGAGATGCTCCTACCTTCGACGGCGGGGTCGGGCCCGGAG
GTCTCGACGCCTTAGAAAATTGTGAAATAATTGGCGAGATCGAATTCGAC
GGTGCCAACGAGTTCAATCTGGCGTGCGATTATTACCGCGGGTTTTCGGC
GACGCAATTCGCGGCCACGATCACGTGTTCAGTCGTGGTTGCTCTCCTGG
CGCTAGCGGCATTCCGGCCAGCTGTGGCGAGGTGCGCGTCGGTGAAGTCT
CTGGCGATCGCCGGCGGCATTATACTGATTGTGTACGTCGTGTTGCAGCT
CGGGGCTGCAGTGCTGGCGCATTTCCTGGCGAAGGAGTGGGAGCGCATCT
ACCGCGGGTTTTCGGCGACGCAATTCGCGGCCACGATCACGTGTTCAGTC
GTGGTTGCTCTCCTGGCGCTAGCGGCATTCCGGCCAGCTGTGGCGAGGTG
CGCGTCGGTGAAGTCTCTGGCGATCGCCGGCGGCATTATACTGATTGTGT
ACGTCGTGTTGCAGCTCGGGGCTGCAGTGCTGGCGCATTTCCTGGCGAAG
GAGTGGGAGCGCATCTACAACGAAGTACTCCAGGACGAGACGATATTTGA
GCTTGAGTTCGGGCCAACGTTCTGGATGAGTGTGGCCGGGCTTGTTCTAG
CGGTGATTGTATCGTGCAATCTCTTTGCAAATGCCAAGCATGCCGAAGAT
GGACCTTTCTACGGCGGCACCTGTGGTGTTAAAGACGGAGAAGGCAACAG
GCATGGCAACGTATAGACAACGAAGTACTCCAGGACGAGACGATATTTGA
GCTTGAGTTCGGGCCAACGTTCTGGATGAGTGTGGCCGGGCTTGTTCTAG
CGGTGATTGTATCGTGCAATCTCTTTGCAAATGCCAAGCATGCCGAAGAT
GGACCTTTCTACGGCGGCACCTGTGGTGTTAAAGACGGAGAAGGCAACAG
GCATGGCAACGTATAG
back to top