prot_L-elsbetiae_contig16542.4434.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16542.4434.1
Unique Nameprot_L-elsbetiae_contig16542.4434.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length582
Homology
BLAST of mRNA_L-elsbetiae_contig16542.4434.1 vs. uniprot
Match: A0A6H5KZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW8_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.400e-41
Identity = 97/225 (43.11%), Postives = 147/225 (65.33%), Query Frame = 0
Query:   69 SASFYDEGRGERERPQQLVMQKDKKPPPFTKESPATWFVEFELFLSNMGLLYTI-QPQEGQQRIFVIGSNNKENDIVFHGAQKVSDHEHAFGFLLQATKGANFRSKILDVGCMDGGYHAMKQFCLPTSDTEKEALKRSMSNMPMQLEEDPKDYFLRFHQVLAVLRSVNGD-IPQGEILAMLRRNLPDEYQPVKTMLLLTNVVSRPTFEHMVRAYYLENVLGKATR 291
            +ASF+D+ R +++R +  V+ KD KPP      P    + FEL L+   L +T+ +P    Q I+++    +  ++  HG ++VSDHE+AF +L++A KGAN +++IL VG + G + A +QFCLP S+ E+EALK S++NM MQL EDPK+Y LRF +VL+ LR+VNGD I   E+LAMLRRNL  +Y+ V  + +  + ++R   E++VR+ Y E  LG   R
Sbjct:   79 TASFFDD-RRQQQRDRDYVL-KDWKPPVHDSNFPLFKSL-FELLLAREDLSHTLAKPASPDQCIWLLNGLPRSENVCLHGERRVSDHEYAFEYLMRARKGANLQARILAVGTVSGAWEAAQQFCLPMSNFEQEALKLSLTNMKMQLGEDPKEYLLRFDRVLSTLRAVNGDAITDREVLAMLRRNLSADYEQVHILFMANSSLTRKNLENLVRSLYAERDLGNVAR 300          
BLAST of mRNA_L-elsbetiae_contig16542.4434.1 vs. uniprot
Match: A0A6H5JU47_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU47_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.180e-16
Identity = 107/396 (27.02%), Postives = 154/396 (38.89%), Query Frame = 0
Query:   94 PPPFTKESPATWFVEFELFLSNMGLLYTIQPQEGQQRIFVIGSNNKENDIVFHGAQKVSDHEHAFGFLLQATKGANFRSKILDVGCMDGGYHAMKQFCLPTSDTEKEALKRSMSNMPMQLEEDPKDYFLRFHQVLAVLRSVNGDIPQGEILAMLRRNLPDEYQPVKTMLLLTNVVSRPTFEHMVRAYY-------LENVLGKATRPVVGADPHALRFGGGGGGPQRNYGRDGN----------------QGRGGH-QGGYRQQQQQQPQQQAXXXXXXXXXXR-LQEPRLPP----------------------------PLPAPGVTVDVQPTPAQSAAGFVPGGATDPGRNAVWYQPKGVPPPGAAMCGVECCARCGMLGHHAAICRAPPRFNG 436
            PP  T ++  +W   F  ++ N  L +TI    G   + V+   ++      +GAQ V +H+  + F+L+A  GA F + +     +   +  M+ + LP    + + L   + N+ M  +EDPK +F R  Q+   LR+V       E++ +L R LP  Y   K   L    ++R   + +VR  Y       +      A+ P V  +PHAL  G       R++G  GN                 GRG H         QQQPQ Q           R +Q+P                                P               Q A   V GG  D G NAV++QPK +PPPGA M  V  C R     HHA  C AP RF G
Sbjct:   32 PPNCTADTFLSWRRRFLAYVDNHNLQHTIF---GSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKASEMRERGSAASTPAVSVNPHALVVG-------RDFGHGGNXXXXXXXXXXXXXXNCDGRGQHWSSXXXXXXQQQPQLQVQQYRQPQQPQRHMQQPNXXXXXXXXXXXXXXXXXXXQQXXXXXXXQMQPYRXXXXXXXXXXXXXQPALNGV-GGIYDCGSNAVYHQPKSLPPPGAPMGIVHRCGRXXXXXHHAIGCAAPRRFEG 416          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16542.4434.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZW8_9PHAE1.400e-4143.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU47_9PHAE4.180e-1627.02CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..37
NoneNo IPR availableGENE3D4.10.60.10coord: 413..457
e-value: 2.3E-7
score: 32.4
NoneNo IPR availablePANTHERPTHR13270PROTEIN C20ORF116-RELATEDcoord: 315..485
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 437..453
e-value: 0.0099
score: 23.6
coord: 414..430
e-value: 1.3
score: 10.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 437..452
e-value: 2.5E-4
score: 21.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 437..452
score: 9.537
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 411..453

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16542contigL-elsbetiae_contig16542:1081..2842 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16542.4434.1mRNA_L-elsbetiae_contig16542.4434.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16542 342..2983 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16542.4434.1 ID=prot_L-elsbetiae_contig16542.4434.1|Name=mRNA_L-elsbetiae_contig16542.4434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=582bp
MEKDELQERVARIEKMMREEEEKRERAEETAREREADETARERSSAGGAA
GERGVGGEDFYGGAAGRRSASFYDEGRGERERPQQLVMQKDKKPPPFTKE
SPATWFVEFELFLSNMGLLYTIQPQEGQQRIFVIGSNNKENDIVFHGAQK
VSDHEHAFGFLLQATKGANFRSKILDVGCMDGGYHAMKQFCLPTSDTEKE
ALKRSMSNMPMQLEEDPKDYFLRFHQVLAVLRSVNGDIPQGEILAMLRRN
LPDEYQPVKTMLLLTNVVSRPTFEHMVRAYYLENVLGKATRPVVGADPHA
LRFGGGGGGPQRNYGRDGNQGRGGHQGGYRQQQQQQPQQQAGYRQQQPQQ
PRLQEPRLPPPLPAPGVTVDVQPTPAQSAAGFVPGGATDPGRNAVWYQPK
GVPPPGAAMCGVECCARCGMLGHHAAICRAPPRFNGRCSQCGEPGHMARY
CKLSPSNIAFLQRQQMQAQQQQPQQLRARQMPQQPRAPHINFVGPSQHWT
TWPSLTALYSRRGPGARPSLFFIGASTILSKTICPESTWGSSRGRSLAMN
NSSSSSSSLTSRVFRGSTWEVSSSSSSSSRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf