mRNA_L-elsbetiae_contig16372.4334.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16372.4334.1
Unique NamemRNA_L-elsbetiae_contig16372.4334.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16372.4334.1 vs. uniprot
Match: A0A6H5JHQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ0_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.780e-9
Identity = 36/52 (69.23%), Postives = 37/52 (71.15%), Query Frame = -1 
Query:   22 HGKRHSAAPMVYRKPATRSSGRLDGGPGSLLGLLGAADGEDAVPVVAVRKKP 177
            H KRHSAA MVYRKPA RS GRLDGGPG LLG L     +D VPVVAV   P
Sbjct:  209 HEKRHSAATMVYRKPAGRS-GRLDGGPGGLLGTLAPEGEDDVVPVVAVGLNP 259
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16372.4334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHQ0_9PHAE4.780e-969.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16372contigL-elsbetiae_contig16372:2893..3244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.212849-CDS-L-elsbetiae_contig16372:2892..32431622815676.212849-CDS-L-elsbetiae_contig16372:2892..3243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16372 2893..3243 +
1691683031.1057377-CDS-L-elsbetiae_contig16372:2892..32431691683031.1057377-CDS-L-elsbetiae_contig16372:2892..3243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16372 2893..3243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16372.4334.1prot_L-elsbetiae_contig16372.4334.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16372 2893..3243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16372.4334.1

>prot_L-elsbetiae_contig16372.4334.1 ID=prot_L-elsbetiae_contig16372.4334.1|Name=mRNA_L-elsbetiae_contig16372.4334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
RPDRTGHGLLSDRHHRHRVLAVRGAEQAEEAAGPAVEPAAAARGGLSVHH
RRRRVPLPVLAGRPVLAPDAAAVPAPAATCAGSPASPPSAGAAAAEKAAA
AAAPAAAAGAVVALRVV
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mRNA from alignment at L-elsbetiae_contig16372:2893..3244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16372.4334.1 ID=mRNA_L-elsbetiae_contig16372.4334.1|Name=mRNA_L-elsbetiae_contig16372.4334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=352bp|location=Sequence derived from alignment at L-elsbetiae_contig16372:2893..3244+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCCCGATCGCACCGGCCACGGGCTTCTTTCGGACCGCCACCACCGGCA
CCGCGTCCTCGCCGTCCGCGGCGCCGAGCAGGCCGAGGAGGCTGCCGGGC
CCGCCGTCGAGCCGGCCGCTGCTGCGCGTGGCGGGCTTTCGGTACACCAT
CGGCGCCGCCGAGTGCCGCTTCCCGTGCTTGCGGGACGGCCTGTGCTTGC
CCCTGACGCCGCTGCTGTCCCTGCTCCTGCTGCCACCTGCGCTGGTTCGC
CGGCTTCTCCGCCCTCCGCCGGCGCCGCTGCTGCTGAGAAGGCGGCCGCT
GCCGCGGCGCCCGCCGCCGCCGCCGGTGCTGTTGTAGCCCTCCGTGTCGT
CG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16372:2893..3244+

>mRNA_L-elsbetiae_contig16372.4334.1 ID=mRNA_L-elsbetiae_contig16372.4334.1|Name=mRNA_L-elsbetiae_contig16372.4334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig16372:2893..3244+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCCCGATCGCACCGGCCACGGGCTTCTTTCGGACCGCCACCACCGGCA
CCGCGTCCTCGCCGTCCGCGGCGCCGAGCAGGCCGAGGAGGCTGCCGGGC
CCGCCGTCGAGCCGGCCGCTGCTGCGCGTGGCGGGCTTTCGGTACACCAT
CGGCGCCGCCGAGTGCCGCTTCCCGTGCTTGCGGGACGGCCTGTGCTTGC
CCCTGACGCCGCTGCTGTCCCTGCTCCTGCTGCCACCTGCGCTGGTTCGC
CGGCTTCTCCGCCCTCCGCCGGCGCCGCTGCTGCTGAGAAGGCGGCCGCT
GCCGCGGCGCCCGCCGCCGCCGCCGGTGCTGTTGTAGCCCTCCGTGTCGT
CCGCCCCGATCGCACCGGCCACGGGCTTCTTTCGGACCGCCACCACCGGC
ACCGCGTCCTCGCCGTCCGCGGCGCCGAGCAGGCCGAGGAGGCTGCCGGG
CCCGCCGTCGAGCCGGCCGCTGCTGCGCGTGGCGGGCTTTCGGTACACCA
TCGGCGCCGCCGAGTGCCGCTTCCCGTGCTTGCGGGACGGCCTGTGCTTG
CCCCTGACGCCGCTGCTGTCCCTGCTCCTGCTGCCACCTGCGCTGGTTCG
CCGGCTTCTCCGCCCTCCGCCGGCGCCGCTGCTGCTGAGAAGGCGGCCGC
TGCCGCGGCGCCCGCCGCCGCCGCCGGTGCTGTTGTAGCCCTCCGTGTCG
TC
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