mRNA_L-elsbetiae_contig16372.4333.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16372.4333.1
Unique NamemRNA_L-elsbetiae_contig16372.4333.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16372.4333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16372contigL-elsbetiae_contig16372:707..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.1621773-CDS-L-elsbetiae_contig16372:706..8211622815676.1621773-CDS-L-elsbetiae_contig16372:706..821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16372 707..821 +
1691683031.0879445-CDS-L-elsbetiae_contig16372:706..8211691683031.0879445-CDS-L-elsbetiae_contig16372:706..821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16372 707..821 +
1622815676.1799183-CDS-L-elsbetiae_contig16372:837..10251622815676.1799183-CDS-L-elsbetiae_contig16372:837..1025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16372 838..1025 +
1691683031.0975797-CDS-L-elsbetiae_contig16372:837..10251691683031.0975797-CDS-L-elsbetiae_contig16372:837..1025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16372 838..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16372.4333.1prot_L-elsbetiae_contig16372.4333.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16372 707..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16372.4333.1

>prot_L-elsbetiae_contig16372.4333.1 ID=prot_L-elsbetiae_contig16372.4333.1|Name=mRNA_L-elsbetiae_contig16372.4333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MLKGGPDHSAVYVPSAWYLANLFTSWPGVVYIPQQLQQCRNIHDARRKNG
GRAANADPEAERKPRASKRDSQSRGDTAVFSGGSARRDIALHKTINHGRA
P
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mRNA from alignment at L-elsbetiae_contig16372:707..1025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16372.4333.1 ID=mRNA_L-elsbetiae_contig16372.4333.1|Name=mRNA_L-elsbetiae_contig16372.4333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=319bp|location=Sequence derived from alignment at L-elsbetiae_contig16372:707..1025+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTAAAAGGGGGACCAGACCACTCAGCTGTGTATGTACCATCAGCCTG
GTACCTGGCTAACCTTTTTACCTCATGGCCGGGGGTAGTCTATATCCCTC
AACAGTTACAGCAGTAGGCAGATTGTACGACGTCGAAACATACATGACGC
ACGGCGGAAAAACGGGGGACGAGCGGCCAACGCGGACCCCGAGGCGGAGC
GAAAACCACGCGCAAGCAAGCGCGATTCACAAAGTAGGGGCGATACTGCT
GTATTTTCTGGAGGGTCAGCGCGGAGGGATATCGCCCTACATAAAACAAT
CAACCACGGAAGAGCTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16372:707..1025+

>mRNA_L-elsbetiae_contig16372.4333.1 ID=mRNA_L-elsbetiae_contig16372.4333.1|Name=mRNA_L-elsbetiae_contig16372.4333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig16372:707..1025+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTAAAAGGGGGACCAGACCACTCAGCTGTGTATGTACCATCAGCCTG
GTACCTGGCTAACCTTTTTACCTCATGGCCGGGGGTAGTCTATATCCCTC
AACAGTTACAGCAGTATGTTAAAAGGGGGACCAGACCACTCAGCTGTGTA
TGTACCATCAGCCTGGTACCTGGCTAACCTTTTTACCTCATGGCCGGGGG
TAGTCTATATCCCTCAACAGTTACAGCAGTGTCGAAACATACATGACGCA
CGGCGGAAAAACGGGGGACGAGCGGCCAACGCGGACCCCGAGGCGGAGCG
AAAACCACGCGCAAGCAAGCGCGATTCACAAAGTAGGGGCGATACTGCTG
TATTTTCTGGAGGGTCAGCGCGGAGGGATATCGCCCTACATAAAACAATC
AACCACGGAAGAGCTCCGGTCGAAACATACATGACGCACGGCGGAAAAAC
GGGGGACGAGCGGCCAACGCGGACCCCGAGGCGGAGCGAAAACCACGCGC
AAGCAAGCGCGATTCACAAAGTAGGGGCGATACTGCTGTATTTTCTGGAG
GGTCAGCGCGGAGGGATATCGCCCTACATAAAACAATCAACCACGGAAGA
GCTCCG
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