mRNA_L-elsbetiae_contig16354.4325.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16354.4325.1
Unique NamemRNA_L-elsbetiae_contig16354.4325.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Match: A0A6H5KH41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH41_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 2.220e-51
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 1
Query:    1 RTAADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPKV 270
            R  ADDVVC VLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSP+V
Sbjct:  360 RELADDVVCSVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPRV 449          
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Match: D8LNX3_ECTSI (Tubulin folding cofactor D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX3_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.660e-51
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 1
Query:    1 RTAADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPKV 270
            R  ADDVVC VLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSP+V
Sbjct:  470 RELADDVVCSVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPRV 559          
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Match: A0A7S2SV11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV11_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.990e-39
Identity = 68/89 (76.40%), Postives = 76/89 (85.39%), Query Frame = 1
Query:   10 ADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPKVKK 276
            ADDVV  VL+LF ++E DGAWHGGCLALAELARRGLLLP RLP A P+V +A+ YDVRRG+  VGAHVRDAACYVCWAFARAYSP V +
Sbjct:   14 ADDVVASVLELFSDSEGDGAWHGGCLALAELARRGLLLPFRLPEAVPVVAKAIQYDVRRGSNSVGAHVRDAACYVCWAFARAYSPAVMR 102          
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Match: A0A835ZJS0_9STRA (Tubulin folding cofactor D n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJS0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 5.930e-38
Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 1
Query:   10 ADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSP 264
            AD+VV  VLDLF +AE DG WHGGCLALAELARRGLLLP+RLP A P+V RA+AYDVRRG  GVGAHVRDAACYVCWAFARAYSP
Sbjct:  437 ADEVVGSVLDLFSDAESDGGWHGGCLALAELARRGLLLPQRLPVAVPVVIRAMAYDVRRGTTGVGAHVRDAACYVCWAFARAYSP 521          
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Match: A0A7S1CFH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFH1_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.130e-35
Identity = 68/92 (73.91%), Postives = 72/92 (78.26%), Query Frame = 1
Query:    1 RTAADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPKVKK 276
            R  A DVV  VL L  + E DGAWHGGCLALAELARRGLLLP  LP A P+V +ALAYDVRRGA  VG HVRDAACYVCWAFARAYSP V +
Sbjct:   58 RDFAGDVVGAVLQLLCDEEGDGAWHGGCLALAELARRGLLLPSLLPEAVPVVVKALAYDVRRGAHSVGTHVRDAACYVCWAFARAYSPSVMR 149          
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Match: UPI0018D85098 (tubulin-specific chaperone D-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D85098)

HSP 1 Score: 135 bits (340), Expect = 5.480e-35
Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 RTAADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPK 267
            R  AD VV  VL+LF   EWDGAWHGGCLALAEL RRGLLLPERLP   P+V +ALAYD ++G+  VGAHVRDAACYVCWAFARAY P+
Sbjct:  401 RELADQVVESVLELFNLREWDGAWHGGCLALAELGRRGLLLPERLPVVVPVVLKALAYDEKKGSCSVGAHVRDAACYVCWAFARAYDPE 489          
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Match: A0A836BXK6_9CHLO (TFCD_C domain-containing protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BXK6_9CHLO)

HSP 1 Score: 134 bits (337), Expect = 1.400e-34
Identity = 66/90 (73.33%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 RTAADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPKV 270
            R   D+VV GVL LF   E D AWHGGCLALAELARRGLLLPERLP   PLVR AL YDVRRG   +GAHVRDAA YVCWAFARAY P++
Sbjct:  413 RELGDEVVAGVLGLFGPTESDAAWHGGCLALAELARRGLLLPERLPAIIPLVREALHYDVRRGPHSIGAHVRDAAAYVCWAFARAYEPQL 502          
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Match: UPI001455CF17 (tubulin-specific chaperone D-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455CF17)

HSP 1 Score: 132 bits (333), Expect = 4.820e-34
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    1 RTAADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPK 267
            R  AD+V   +L+LF   E DGAWHGGCLALAEL RRGLLLPERLP   P+V +ALAYD +RG+  VGAHVRDAACYVCWAFARAY PK
Sbjct:  402 RELADEVTGSMLELFSLRESDGAWHGGCLALAELGRRGLLLPERLPEVVPVVLKALAYDEKRGSYSVGAHVRDAACYVCWAFARAYDPK 490          
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Match: A0A8B7ZYW5_ACAPL (Tubulin-specific chaperone D n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZYW5_ACAPL)

HSP 1 Score: 132 bits (333), Expect = 4.830e-34
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    1 RTAADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPK 267
            R  AD VV  VL+LF   E DGAWHGGCLALAEL RRGLLLPERLP   P+V +ALAYD ++G+  VGAHVRDAACYVCWAFARAY P+
Sbjct:  401 RELADQVVESVLELFCLGELDGAWHGGCLALAELGRRGLLLPERLPEVVPVVLKALAYDEKKGSCSVGAHVRDAACYVCWAFARAYDPQ 489          
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Match: A0A6P8HPE4_ACTTE (tubulin-specific chaperone D-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HPE4_ACTTE)

HSP 1 Score: 132 bits (332), Expect = 5.110e-34
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    1 RTAADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACPLVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPK 267
            +  ADDVV  VL+LF   E DGAWHGGCLALAEL RRGLLLP+RLP   P+V +ALAYD RRG+  VG+HVRD ACYVCW+FARAY P+
Sbjct:  456 KDLADDVVGSVLELFTPNETDGAWHGGCLALAELGRRGLLLPQRLPEVVPVVLKALAYDERRGSYSVGSHVRDGACYVCWSFARAYDPR 544          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16354.4325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH41_9PHAE2.220e-5195.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNX3_ECTSI2.660e-5195.56Tubulin folding cofactor D n=1 Tax=Ectocarpus sili... [more]
A0A7S2SV11_9STRA4.990e-3976.40Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835ZJS0_9STRA5.930e-3882.35Tubulin folding cofactor D n=1 Tax=Tribonema minus... [more]
A0A7S1CFH1_9STRA2.130e-3573.91Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI0018D850985.480e-3573.03tubulin-specific chaperone D-like n=1 Tax=Patiria ... [more]
A0A836BXK6_9CHLO1.400e-3473.33TFCD_C domain-containing protein n=2 Tax=Edaphochl... [more]
UPI001455CF174.820e-3471.91tubulin-specific chaperone D-like n=1 Tax=Asterias... [more]
A0A8B7ZYW5_ACAPL4.830e-3471.91Tubulin-specific chaperone D n=2 Tax=Acanthaster p... [more]
A0A6P8HPE4_ACTTE5.110e-3469.66tubulin-specific chaperone D-like n=1 Tax=Actinia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16354contigL-elsbetiae_contig16354:1286..2455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue8.5e-44
Seed eggNOG ortholog2880.D8LNX3
KEGG koko:K21767
Hectar predicted targeting categoryother localisation
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsCOG2116@1,KOG1943@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.2347124-CDS-L-elsbetiae_contig16354:1285..13921622815675.2347124-CDS-L-elsbetiae_contig16354:1285..1392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16354 1286..1392 +
1691683030.4840982-CDS-L-elsbetiae_contig16354:1285..13921691683030.4840982-CDS-L-elsbetiae_contig16354:1285..1392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16354 1286..1392 +
1622815675.2507813-CDS-L-elsbetiae_contig16354:2286..24551622815675.2507813-CDS-L-elsbetiae_contig16354:2286..2455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16354 2287..2455 +
1691683030.4950466-CDS-L-elsbetiae_contig16354:2286..24551691683030.4950466-CDS-L-elsbetiae_contig16354:2286..2455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16354 2287..2455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16354.4325.1prot_L-elsbetiae_contig16354.4325.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16354 1286..2455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16354.4325.1

>prot_L-elsbetiae_contig16354.4325.1 ID=prot_L-elsbetiae_contig16354.4325.1|Name=mRNA_L-elsbetiae_contig16354.4325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
RTAADDVVCGVLDLFVEAEWDGAWHGGCLALAELARRGLLLPERLPRACP
LVRRALAYDVRRGAGGVGAHVRDAACYVCWAFARAYSPKVKK
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mRNA from alignment at L-elsbetiae_contig16354:1286..2455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16354.4325.1 ID=mRNA_L-elsbetiae_contig16354.4325.1|Name=mRNA_L-elsbetiae_contig16354.4325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig16354:1286..2455+ (Laminarionema elsbetiae ELsaHSoW15)
CGCACGGCAGCCGACGACGTTGTCTGCGGCGTGCTGGACCTGTTCGTGGA GGCGGAGTGGGACGGTGCTTGGCACGGTGGATGCCTCGCCCTAGCAGAGC TCGCCAGGTACATATGTAGTGGTTCCTAATTGTTTTTTTGTTTTTTTGTT TTTTTGTTTTTTTTCTCCCATTATTGGCTTGTTCGTCGTCTGCCCCACTG ACCCCCCATACTCCACTGCGACTAGCTAGACGACCCAACCGGGGTCGCAC CTGTGAGGCCCGTTTATACGTGAGGCCGCGTGCCCTGTTCCTCGCCCTAG CAGAGCTCGCCAGGTACAGGCGCCGGCAGCGGTTCCTGTGTAAGATCGGC ATGAATAGGGTCGGGTGTGGTCCCCGTGTAAGACCGGCATATGAATAGGG CCGGGTGCCCCGTTTTTATCGCCGGTAAAAGCGCTCAGGGCTTTCGGTTG CCTCGGTTTAGCAGAACTGGCCAGGAGGTGTGTAGGCAGGCAGAATGCGG GGAGACAATTCTCGCTTTGTACGCCTATTATGTGTAGATAGCTCTCCTGG GCAGAGGCGTGGCGGGATTTCAGCGGTGCTTTGCGGCCACCTGTGCTCTA CACCGTGGTTGCGGCTTGCGGTATATACGGGTTATGTGGTCGGACCGGTG CCGTAGGGAGGCAGTCAGTCGTACCGAGCGCTGCCGATAAACGACGGCAG CAGCATTTCTCGCCGCCGGATACGAGCACCTGGCACACTCGCGGGCTTGC CAAAAGCCGCATGCTTTGAGCCTCTCAATCAACCCCCCCCCCCCCCCCCC CCCTCCCCCTCTCCCCCCCCCCCCCCCTCCCCTCTCCNNNNNNNNNNCTC TCCGCCCCCCGCCACGCCCCCCCGGCAACCCTGCGCACGTCCCCAACCCC CCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTT TTTCGCTCGCTACCCCCCGTGCCTATGCTGGTCGCCACGGCGCCCCCGCA GGCGAGGGCTGCTCCTCCCCGAGAGGCTGCCGCGGGCCTGCCCGCTGGTG AGGCGTGCCTTGGCCTACGACGTGCGGCGCGGCGCCGGCGGCGTGGGTGC ACACGTCCGAGACGCGGCGTGCTACGTCTGCTGGGCTTTTGCTCGCGCTT ACTCTCCGAAGGTGAAAAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16354:1286..2455+

>mRNA_L-elsbetiae_contig16354.4325.1 ID=mRNA_L-elsbetiae_contig16354.4325.1|Name=mRNA_L-elsbetiae_contig16354.4325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig16354:1286..2455+ (Laminarionema elsbetiae ELsaHSoW15)
CGCACGGCAGCCGACGACGTTGTCTGCGGCGTGCTGGACCTGTTCGTGGA
GGCGGAGTGGGACGGTGCTTGGCACGGTGGATGCCTCGCCCTAGCAGAGC
TCGCCAGCGCACGGCAGCCGACGACGTTGTCTGCGGCGTGCTGGACCTGT
TCGTGGAGGCGGAGTGGGACGGTGCTTGGCACGGTGGATGCCTCGCCCTA
GCAGAGCTCGCCAGGCGAGGGCTGCTCCTCCCCGAGAGGCTGCCGCGGGC
CTGCCCGCTGGTGAGGCGTGCCTTGGCCTACGACGTGCGGCGCGGCGCCG
GCGGCGTGGGTGCACACGTCCGAGACGCGGCGTGCTACGTCTGCTGGGCT
TTTGCTCGCGCTTACTCTCCGAAGGTGAAAAAAGCGAGGGCTGCTCCTCC
CCGAGAGGCTGCCGCGGGCCTGCCCGCTGGTGAGGCGTGCCTTGGCCTAC
GACGTGCGGCGCGGCGCCGGCGGCGTGGGTGCACACGTCCGAGACGCGGC
GTGCTACGTCTGCTGGGCTTTTGCTCGCGCTTACTCTCCGAAGGTGAAAA
AA
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