mRNA_L-elsbetiae_contig16344.4318.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16344.4318.1
Unique NamemRNA_L-elsbetiae_contig16344.4318.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A6H5KZ19_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ19_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.400e-8
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 1 
Query:   31 WTCPICLNWFDMPVSPPCGHSFCAG 105
            W+CP+C  WFDMPV PPC H+FCAG
Sbjct:   29 WSCPVCFMWFDMPVFPPCQHTFCAG 53
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BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A8C5AB53_GADMO (zf-RING_UBOX domain-containing protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5AB53_GADMO)

HSP 1 Score: 47.4 bits (111), Expect = 3.330e-6
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:   22 EANWTCPICLNWFDMPVSPPCGHSFC 99
            E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   10 EENFSCPICLDVFNSPVSTPCGHNFC 35
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BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A8C5ASR7_GADMO (Uncharacterized protein n=3 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5ASR7_GADMO)

HSP 1 Score: 48.9 bits (115), Expect = 1.520e-5
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 STAEEQEANWTCPICLNWFDMPVSPPCGHSFC 99
            +T    E N++CPICL+ F+ PVS PCGH+FC
Sbjct:  271 ATTSGSEENFSCPICLDVFNSPVSTPCGHNFC 302
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BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A8C4ZUT0_GADMO (Uncharacterized protein n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZUT0_GADMO)

HSP 1 Score: 48.9 bits (115), Expect = 1.520e-5
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 STAEEQEANWTCPICLNWFDMPVSPPCGHSFC 99
            +T    E N++CPICL+ F+ PVS PCGH+FC
Sbjct:    4 ATTSGSEENFSCPICLDVFNSPVSTPCGHNFC 35
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BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: UPI0011B813A6 (E3 ubiquitin-protein ligase TRIM47-like isoform X2 n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B813A6)

HSP 1 Score: 48.9 bits (115), Expect = 1.530e-5
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 STAEEQEANWTCPICLNWFDMPVSPPCGHSFC 99
            +T    E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   19 ATTSGSEENFSCPICLDVFNSPVSTPCGHNFC 50
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BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A8C4ZYA1_GADMO (Uncharacterized protein n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZYA1_GADMO)

HSP 1 Score: 48.1 bits (113), Expect = 2.840e-5
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 STAEEQEANWTCPICLNWFDMPVSPPCGHSFC 99
            S +   E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   41 SNSSWSEENFSCPICLDVFNSPVSTPCGHNFC 72
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BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A087XY97_POEFO (E3 ubiquitin-protein ligase TRIM21-like n=10 Tax=Poeciliinae TaxID=586240 RepID=A0A087XY97_POEFO)

HSP 1 Score: 47.4 bits (111), Expect = 5.330e-5
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 1 
Query:    1 LSTAEEQEANWTCPICLNWFDMPVSPPCGHSFC 99
            LS+A   E  +TC ICL  F+ PVS PCGHSFC
Sbjct:    3 LSSAFLSEDQFTCSICLEMFNNPVSTPCGHSFC 35
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BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A8C5B4R7_GADMO (Uncharacterized protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5B4R7_GADMO)

HSP 1 Score: 47.4 bits (111), Expect = 5.330e-5
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:   22 EANWTCPICLNWFDMPVSPPCGHSFC 99
            E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   41 EENFSCPICLDVFNSPVSTPCGHNFC 66
[Close]
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: UPI0011B61885 (E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B61885)

HSP 1 Score: 47.4 bits (111), Expect = 5.330e-5
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:   22 EANWTCPICLNWFDMPVSPPCGHSFC 99
            E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   10 EENFSCPICLDVFNSPVSTPCGHNFC 35
[Close]
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: UPI0011B84FE6 (E3 ubiquitin-protein ligase TRIM47-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B84FE6)

HSP 1 Score: 47.4 bits (111), Expect = 5.350e-5
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:   22 EANWTCPICLNWFDMPVSPPCGHSFC 99
            E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   10 EENFSCPICLDVFNSPVSTPCGHNFC 35
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KZ19_9PHAE7.400e-872.00RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A8C5AB53_GADMO3.330e-665.38zf-RING_UBOX domain-containing protein n=1 Tax=Gad... [more]
A0A8C5ASR7_GADMO1.520e-556.25Uncharacterized protein n=3 Tax=Gadus morhua TaxID... [more]
A0A8C4ZUT0_GADMO1.520e-556.25Uncharacterized protein n=2 Tax=Gadus morhua TaxID... [more]
UPI0011B813A61.530e-556.25E3 ubiquitin-protein ligase TRIM47-like isoform X2... [more]
A0A8C4ZYA1_GADMO2.840e-556.25Uncharacterized protein n=2 Tax=Gadus morhua TaxID... [more]
A0A087XY97_POEFO5.330e-560.61E3 ubiquitin-protein ligase TRIM21-like n=10 Tax=P... [more]
A0A8C5B4R7_GADMO5.330e-565.38Uncharacterized protein n=1 Tax=Gadus morhua TaxID... [more]
UPI0011B618855.330e-565.38E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Ga... [more]
UPI0011B84FE65.350e-565.38E3 ubiquitin-protein ligase TRIM47-like n=1 Tax=Ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16344contigL-elsbetiae_contig16344:327..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.7355173-CDS-L-elsbetiae_contig16344:326..4401622815674.7355173-CDS-L-elsbetiae_contig16344:326..440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16344 327..440 -
1691683030.2017753-CDS-L-elsbetiae_contig16344:326..4401691683030.2017753-CDS-L-elsbetiae_contig16344:326..440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16344 327..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16344.4318.1prot_L-elsbetiae_contig16344.4318.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16344 327..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16344.4318.1

>prot_L-elsbetiae_contig16344.4318.1 ID=prot_L-elsbetiae_contig16344.4318.1|Name=mRNA_L-elsbetiae_contig16344.4318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=38bp
LSTAEEQEANWTCPICLNWFDMPVSPPCGHSFCAGVS*
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mRNA from alignment at L-elsbetiae_contig16344:327..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16344.4318.1 ID=mRNA_L-elsbetiae_contig16344.4318.1|Name=mRNA_L-elsbetiae_contig16344.4318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=114bp|location=Sequence derived from alignment at L-elsbetiae_contig16344:327..440- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCCACTGCGGAGGAGCAAGAAGCAAACTGGACGTGTCCCATATGCCT
CAACTGGTTCGACATGCCGGTTTCTCCTCCTTGTGGCCACAGCTTTTGCG
CTGGGGTGAGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16344:327..440-

>mRNA_L-elsbetiae_contig16344.4318.1 ID=mRNA_L-elsbetiae_contig16344.4318.1|Name=mRNA_L-elsbetiae_contig16344.4318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig16344:327..440- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCCACTGCGGAGGAGCAAGAAGCAAACTGGACGTGTCCCATATGCCT
CAACTGGTTCGACATGCCGGTTTCTCCTCCTTGTGGCCACAGCTTTTGCG
CTGGGGTGAGTTGACTTTCCACTGCGGAGGAGCAAGAAGCAAACTGGACG
TGTCCCATATGCCTCAACTGGTTCGACATGCCGGTTTCTCCTCCTTGTGG
CCACAGCTTTTGCGCTGGGGTGAGTTGA
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