mRNA_L-elsbetiae_contig16320.4312.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16320.4312.1
Unique NamemRNA_L-elsbetiae_contig16320.4312.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16320.4312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16320contigL-elsbetiae_contig16320:101..378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.3602006-CDS-L-elsbetiae_contig16320:100..2431622815674.3602006-CDS-L-elsbetiae_contig16320:100..243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16320 101..243 +
1691683029.9984374-CDS-L-elsbetiae_contig16320:100..2431691683029.9984374-CDS-L-elsbetiae_contig16320:100..243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16320 101..243 +
1622815674.3709977-CDS-L-elsbetiae_contig16320:265..3771622815674.3709977-CDS-L-elsbetiae_contig16320:265..377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16320 266..377 +
1691683030.0089571-CDS-L-elsbetiae_contig16320:265..3771691683030.0089571-CDS-L-elsbetiae_contig16320:265..377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16320 266..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16320.4312.1prot_L-elsbetiae_contig16320.4312.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16320 101..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16320.4312.1

>prot_L-elsbetiae_contig16320.4312.1 ID=prot_L-elsbetiae_contig16320.4312.1|Name=mRNA_L-elsbetiae_contig16320.4312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
DRSRHEKVKYDFFEPKKGRIRLYKKADFGRNRIWLFFGFRIRQYKKRPLK
PFFGYAKNRPHGPSQKRTQVHFPVRPLASCCNTPG
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mRNA from alignment at L-elsbetiae_contig16320:101..378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16320.4312.1 ID=mRNA_L-elsbetiae_contig16320.4312.1|Name=mRNA_L-elsbetiae_contig16320.4312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=278bp|location=Sequence derived from alignment at L-elsbetiae_contig16320:101..378+ (Laminarionema elsbetiae ELsaHSoW15)
GATCGGAGCCGACACGAAAAAGTAAAATACGATTTCTTCGAACCGAAAAA GGGCCGAATCCGACTGTATAAGAAGGCGGATTTTGGCCGAAATCGGATTT GGCTCTTTTTTGGTTTCAGAATCCGACAGTATAAGAAACGGCCTTGGCAC GATTGACTGAATGTTTTTGAAGCCCTTTTTTGGATACGCCAAAAATCGAC CGCACGGGCCCTCCCAAAAGCGCACTCAAGTGCACTTTCCAGTTCGCCCC TTAGCATCCTGCTGCAACACCCCCGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16320:101..378+

>mRNA_L-elsbetiae_contig16320.4312.1 ID=mRNA_L-elsbetiae_contig16320.4312.1|Name=mRNA_L-elsbetiae_contig16320.4312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig16320:101..378+ (Laminarionema elsbetiae ELsaHSoW15)
GATCGGAGCCGACACGAAAAAGTAAAATACGATTTCTTCGAACCGAAAAA
GGGCCGAATCCGACTGTATAAGAAGGCGGATTTTGGCCGAAATCGGATTT
GGCTCTTTTTTGGTTTCAGAATCCGACAGTATAAGAAACGGCCGATCGGA
GCCGACACGAAAAAGTAAAATACGATTTCTTCGAACCGAAAAAGGGCCGA
ATCCGACTGTATAAGAAGGCGGATTTTGGCCGAAATCGGATTTGGCTCTT
TTTTGGTTTCAGAATCCGACAGTATAAGAAACGGCCTTTGAAGCCCTTTT
TTGGATACGCCAAAAATCGACCGCACGGGCCCTCCCAAAAGCGCACTCAA
GTGCACTTTCCAGTTCGCCCCTTAGCATCCTGCTGCAACACCCCCGGATT
TGAAGCCCTTTTTTGGATACGCCAAAAATCGACCGCACGGGCCCTCCCAA
AAGCGCACTCAAGTGCACTTTCCAGTTCGCCCCTTAGCATCCTGCTGCAA
CACCCCCGGA
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