mRNA_L-elsbetiae_contig163.4303.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig163.4303.1 vs. uniprot
Match: D8LJB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB7_ECTSI) HSP 1 Score: 529 bits (1363), Expect = 1.040e-180 Identity = 352/532 (66.17%), Postives = 408/532 (76.69%), Query Frame = 1 Query: 118 LNLEASALSPATARTTGALVGSSQALFPRAPAASLTNNRSSKSSELQAPLPAV---EPAASTTTARGGETVALTFEELLARCTAMLGAPEGVQARESLRRVLKIWSEGGSMDECIQTSQRPQGSSR-RRSKQRPALPVEARARPRAGGTP---VAAAVVGGTGERPLSLAVHGSQVDSSVNRDRQLAIAEAAAARWEKRYNQQVSATERALLEKRNANISLREIERVLEKERAEAARXXXXXXXXXXXXXXTLRDVADAEGEREGGPKVALSETVEHSLHSMVVRERCERQRRQRLQASEEKLTAATLEIGELREALAAAEKNRSLQPVVVGLGEILRECLASLGLVRGAPEGEFHSLVSRLRDRAEKAARGFVSVEGLHAAAEGARALDTVRDLRVKLADALLDASRQRARRVSADARLKEKETGEMERAFGKEDLLKARQEVDATRARMAVADAEMKQLKQCLKEEQERSAAARRAAARNRAAPIADLRGIFDEGHRLVEEKMRIKAQQIQQEVSEMQQDLSLEARLREL 1692 L++EAS AT T G L S +L PRAP SL+N R S++SEL+A L A EPAA ++R G +LTF+ELL C AMLG P GV+ARESLRRVLK WSE G +C S+RP ++R RRSKQRP+LP+EAR GGT AA T LAV G+Q+DSS N DR+LA+AEAAAARWEKRYNQQ SATE+ALLE RNA ISLRE+ERVL +ERA+AAR XXXXXXXXXXX + E+EGG ALSE+V HSL SM VRERCE+Q RQRLQ S+ KL A EIGELR+A AAEKNRSLQPVVV LGEIL+ECLAS+G+VRG P+GEFH++VS LRDRAEKAA GF+SVEGLHAAAEGARALD +RDLRV+L +ALLDASRQRARRVSADAR+KEKETGEMER FGK++LLKAR+E TRAR+AVADAE+KQLK+ LKEEQERSAAA AA R+R+APIAD+RGIFDEGHRLV+EKM++KAQQIQQE S EARLRE+ Sbjct: 3 LSVEASPAFQATTET-GTLASVSPSLLPRAPPPSLSN-RMSRTSELRASLVAAAGAEPAARVASSRTGRKSSLTFDELLVGCIAMLGVPGGVRARESLRRVLKAWSEDGDRHDCDDGSRRPTEAARPRRSKQRPSLPLEAR-----GGTSNFTTTAAGHSATDRSSSLLAVRGNQMDSSANNDRRLAVAEAAAARWEKRYNQQASATEKALLETRNAKISLREVERVLGEERADAARAARXXXXXXXXXXXXXXXXXXXQDEKEGGLTSALSESVAHSLQSMAVRERCEKQLRQRLQLSQAKLAEAETEIGELRKAAKAAEKNRSLQPVVVSLGEILKECLASMGIVRGVPDGEFHAMVSVLRDRAEKAATGFLSVEGLHAAAEGARALDAIRDLRVQLQEALLDASRQRARRVSADARVKEKETGEMERTFGKDELLKARKETGETRARLAVADAEVKQLKKSLKEEQERSAAAW-AATRHRSAPIADVRGIFDEGHRLVQEKMKLKAQQIQQEXXXXXXXXS-EARLREV 525 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig163.4303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig163.4303.1 >prot_L-elsbetiae_contig163.4303.1 ID=prot_L-elsbetiae_contig163.4303.1|Name=mRNA_L-elsbetiae_contig163.4303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=564bp MDESNATATGGTRTTTRECTKNARSTVRSVSDLGTACYTLNLEASALSPAback to top mRNA from alignment at L-elsbetiae_contig163:16917..24305+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig163.4303.1 ID=mRNA_L-elsbetiae_contig163.4303.1|Name=mRNA_L-elsbetiae_contig163.4303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7389bp|location=Sequence derived from alignment at L-elsbetiae_contig163:16917..24305+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig163:16917..24305+ >mRNA_L-elsbetiae_contig163.4303.1 ID=mRNA_L-elsbetiae_contig163.4303.1|Name=mRNA_L-elsbetiae_contig163.4303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3384bp|location=Sequence derived from alignment at L-elsbetiae_contig163:16917..24305+ (Laminarionema elsbetiae ELsaHSoW15)back to top |