mRNA_L-elsbetiae_contig10.43.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig10.43.1
Unique Name	mRNA_L-elsbetiae_contig10.43.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI)

HSP 1 Score: 732 bits (1890), Expect = 3.200e-266
Identity = 357/360 (99.17%), Postives = 359/360 (99.72%), Query Frame = 1

Query:   82 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 1161
            MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAAS+EEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILM PFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG
Sbjct:    1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMRPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 360

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BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE)

HSP 1 Score: 728 bits (1878), Expect = 2.160e-264
Identity = 349/360 (96.94%), Postives = 358/360 (99.44%), Query Frame = 1

Query:   82 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 1161
            MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPV+ IWLT+LG+STMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNE+LPVA+SAPS+VG
Sbjct:    1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIAIWLTSLGISTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEVLPVAVSAPSIVG 360

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BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Match: PSBA_PHATC (Photosystem II protein D1 n=590 Tax=root TaxID=1 RepID=PSBA_PHATC)

HSP 1 Score: 678 bits (1750), Expect = 6.880e-245
Identity = 328/360 (91.11%), Postives = 342/360 (95.00%), Query Frame = 1

Query:   82 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 1161
            M ATLERR+    W  F  WITSTENRLYIGWFGCLM PTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNII+GAVIPSSNAIGIHFYPIWEAASV+EWLYNGGPYQLIV HFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTA+GVSTMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+LPVA++AP+V G
Sbjct:    1 MTATLERRQSVSLWERFCGWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSNAIGIHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGVSTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360

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BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Match: A0A451FLR3_9STRA (Photosystem II protein D1 n=179 Tax=Eukaryota TaxID=2759 RepID=A0A451FLR3_9STRA)

HSP 1 Score: 668 bits (1723), Expect = 8.930e-241
Identity = 319/358 (89.11%), Postives = 339/358 (94.69%), Query Frame = 1

Query:   82 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSV 1155
            M ATLERRE    W  F +WITSTENRLYIGWFG LMIP LLTA SC+II FIAAPPVDIDGIREPVAGSLLYGNNIISGA++PSSNAIGIHFYPIWEAAS++EWLYNGGPYQLIVFHFL+GVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET +  S NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTALG+STMAFNLNGFNFNQSVVDS+GRVINTWADI+NRA+LG+EVMHERNAHNFPLDLA + +LPVA++AP+V
Sbjct:    1 MTATLERREGTSLWERFCSWITSTENRLYIGWFGVLMIPLLLTATSCFIIGFIAAPPVDIDGIREPVAGSLLYGNNIISGAIVPSSNAIGIHFYPIWEAASLDEWLYNGGPYQLIVFHFLLGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETEDGVSANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAIWPVVGIWLTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGIEVMHERNAHNFPLDLAVSNVLPVALNAPAV 358

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BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Match: A0A023JEK8_9STRA (Photosystem II protein D1 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A023JEK8_9STRA)

HSP 1 Score: 668 bits (1723), Expect = 8.930e-241
Identity = 321/360 (89.17%), Postives = 339/360 (94.17%), Query Frame = 1

Query:   82 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 1161
            M ATLERRE    W  F  WITSTENRLYIGWFGC+M PTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIGIH YPIWEAAS++EWLYNGGPYQLIV HF IGV  +MGREWELSYRLGMRPWIFVAFSAPVAAA+AVF++YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES ++GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTA+G+STMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+LPVA++AP+V G
Sbjct:    1 MTATLERRESVSLWERFCGWITSTENRLYIGWFGCVMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGIHLYPIWEAASIDEWLYNGGPYQLIVLHFFIGVCTYMGREWELSYRLGMRPWIFVAFSAPVAAAAAVFVVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESPDFGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360

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BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Match: A0A7S2RD40_9STRA (Photosystem II protein D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD40_9STRA)

HSP 1 Score: 668 bits (1723), Expect = 1.400e-240
Identity = 320/363 (88.15%), Postives = 342/363 (94.21%), Query Frame = 1

Query:   73 KIIMVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 1161
            KI M ATLERRE    W  F +WITSTENRLYIGWFG +MIPTLLTA SC+II FIAAPPVDIDGIREPVAGSL+YGNNIISGAVIPSSNAIG+HFYPIWEAASV+EWLYNGGPYQLIV HFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET++ ES N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPV+GIW+TA+G+STMAFNLNGFNFNQSVVDSEGRVINTWADI+NRADLG+EVMHERNAHNFPLDLA+ E+ PVA+SAP+V G
Sbjct:   10 KIKMTATLERRESISLWERFCSWITSTENRLYIGWFGVVMIPTLLTATSCFIIGFIAAPPVDIDGIREPVAGSLMYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTDSESTNNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVLGIWITAMGISTMAFNLNGFNFNQSVVDSEGRVINTWADILNRADLGIEVMHERNAHNFPLDLAAGEVFPVAVSAPAVNG 372

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BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Match: PSBA_TRIAZ (Photosystem II protein D1 n=457 Tax=root TaxID=1 RepID=PSBA_TRIAZ)

HSP 1 Score: 653 bits (1685), Expect = 5.480e-235
Identity = 305/360 (84.72%), Postives = 337/360 (93.61%), Query Frame = 1

Query:   82 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 1161
            M  TL++R     W  F  WITSTENR+YIGWFG LMIPTL++A +C++IAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIG+HFYPIWEAAS++EWLYNGGPYQL++FHFLIGVAC++GREWELSYRLGMRPWI VAFSAPVAAA+AVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSL+RET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFLAAWPV+GIW TALGVSTMAFNLNGFNFNQS++DS+GRVI TWAD+INRA+LGMEVMHERNAHNFPLDLA+ ++ PVA++AP + G
Sbjct:    1 MTTTLQQRSTANVWDRFCEWITSTENRIYIGWFGVLMIPTLVSAIACFVIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGVACYLGREWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNFNQSIIDSQGRVIGTWADVINRANLGMEVMHERNAHNFPLDLAAGDVAPVALTAPPING 360

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BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Match: A0A5P8VR66_9NOSO (Photosystem II protein D1 n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A5P8VR66_9NOSO)

HSP 1 Score: 650 bits (1676), Expect = 1.290e-233
Identity = 301/360 (83.61%), Postives = 335/360 (93.06%), Query Frame = 1

Query:   82 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 1161
            M  TL+RRE    W  F  WITST NR+YIGWFG +MIPTLL A +C++IAFIAAPPVDIDGIREPVAGSL+YGNNIISGAV+PSSNAIG+HFYPIWEAAS++EWLYNGGPYQL++FHFLIGV C++GREWELSYRLGMRPWI +A+SAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH  GVAGVFGGSLFSAMHGSLVTSSL+RET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFLAAWPV+GIW TALGVSTMAFNLNGFNFNQS++DS GRVI+TWAD+INRA+LGMEVMHERNAHNFPLDLA+ ++ PVA++AP++ G
Sbjct:    1 MTTTLQRRESANVWDRFCEWITSTNNRIYIGWFGVVMIPTLLAATACFVIAFIAAPPVDIDGIREPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGVFCYLGREWELSYRLGMRPWIAIAYSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNFNQSIIDSSGRVISTWADVINRANLGMEVMHERNAHNFPLDLAAGDVAPVALTAPAING 360

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BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Match: A0A1E2WTZ6_9NOSO (Photosystem II protein D1 n=33 Tax=cellular organisms TaxID=131567 RepID=A0A1E2WTZ6_9NOSO)

HSP 1 Score: 649 bits (1674), Expect = 2.600e-233
Identity = 303/360 (84.17%), Postives = 334/360 (92.78%), Query Frame = 1

Query:   82 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 1161
            M  TL+RRE    W  F  WITST NR+YIGWFG +MIPTLL A +C++IAFIAAPPVDIDGIREPVAGSL+YGNNIISGAV+PSSNAIG+HFYPIWEAAS++EWLYNGGPYQL+VFHFLIGV C+MGREWELSYRLGMRPWI +A+SAPVAAA+AVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH  GVAGVFGGSLFSAMHGSLVTSSL+RET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFLAAWPV+GIW TALGVSTMAFNLNGFNFNQS++DSEGRVI TWAD+INRA+LGMEVMHERNAHNFPLDLA+ +  PVA++AP++ G
Sbjct:    1 MTTTLQRRESANVWDRFCEWITSTNNRIYIGWFGVVMIPTLLAATACFVIAFIAAPPVDIDGIREPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGVFCYMGREWELSYRLGMRPWIAIAYSAPVAAATAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNFNQSIIDSEGRVIATWADVINRANLGMEVMHERNAHNFPLDLAAGDSAPVALTAPAING 360

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BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Match: PSBA_EMIHU (Photosystem II protein D1 n=71 Tax=root TaxID=1 RepID=PSBA_EMIHU)

HSP 1 Score: 649 bits (1673), Expect = 3.690e-233
Identity = 310/360 (86.11%), Postives = 331/360 (91.94%), Query Frame = 1

Query:   82 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 1161
            M  TLERRE    W  F  WITSTENRLYIGWFGCLM PTLL+A S YIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIG+HFYPIWEAAS++EWLYNGG YQL+V HF IGV  ++GREWELSYRLGMRPWI VAFSAPVAAA+AVF+IYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSLIRET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFL AWPVVGIW TA+GV+TMAFNLNGFNFNQSVVDS+GRVINTWADI+NR++LGMEVMHERNAHNFPLDLA+ E LPVA+ AP+V  
Sbjct:    1 MTTTLERRESASFWEQFCAWITSTENRLYIGWFGCLMFPTLLSAISAYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGVHFYPIWEAASIDEWLYNGGTYQLVVLHFFIGVCAYIGREWELSYRLGMRPWICVAFSAPVAAAAAVFVIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGAWPVVGIWFTAMGVATMAFNLNGFNFNQSVVDSQGRVINTWADILNRSNLGMEVMHERNAHNFPLDLAAGESLPVALVAPAVAA 360

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig10.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PSBA_ECTSI	3.200e-266	99.17	Photosystem II protein D1 n=1129 Tax=Eukaryota Tax...	[more]
A0A1N7TJI8_9PHAE	2.160e-264	96.94	Photosystem II protein D1 n=412 Tax=Eukaryota TaxI...	[more]
PSBA_PHATC	6.880e-245	91.11	Photosystem II protein D1 n=590 Tax=root TaxID=1 R...	[more]
A0A451FLR3_9STRA	8.930e-241	89.11	Photosystem II protein D1 n=179 Tax=Eukaryota TaxI...	[more]
A0A023JEK8_9STRA	8.930e-241	89.17	Photosystem II protein D1 n=4 Tax=Bacillariophyta ...	[more]
A0A7S2RD40_9STRA	1.400e-240	88.15	Photosystem II protein D1 n=1 Tax=Rhizochromulina ...	[more]
PSBA_TRIAZ	5.480e-235	84.72	Photosystem II protein D1 n=457 Tax=root TaxID=1 R...	[more]
A0A5P8VR66_9NOSO	1.290e-233	83.61	Photosystem II protein D1 n=6 Tax=Cyanobacteria Ta...	[more]
A0A1E2WTZ6_9NOSO	2.600e-233	84.17	Photosystem II protein D1 n=33 Tax=cellular organi...	[more]
PSBA_EMIHU	3.690e-233	86.11	Photosystem II protein D1 n=71 Tax=root TaxID=1 Re...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig10	contig	L-elsbetiae_contig10:77983..79220 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	733.8
Seed ortholog evalue	3.9e-209
Seed eggNOG ortholog	2880.D1J6Z2
Preferred name	psbA
KEGG ko	ko:K02703
KEGG Pathway	ko00195,ko01100,map00195,map01100
KEGG Module	M00161
Hectar predicted targeting category	signal anchor
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
EggNOG OGs	28IP8@1,2QR09@2759
EC	1.10.3.9
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko00194,ko01000
Exons	1
Model size	1238
Cds size	1083
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig10.43.1	prot_L-elsbetiae_contig10.43.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig10 78064..79146 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815233.3594792-UTR-L-elsbetiae_contig10:77982..78063	1622815233.3594792-UTR-L-elsbetiae_contig10:77982..78063	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig10 77983..78063 +
1691682784.6020548-UTR-L-elsbetiae_contig10:77982..78063	1691682784.6020548-UTR-L-elsbetiae_contig10:77982..78063	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig10 77983..78063 +
1622815233.387542-UTR-L-elsbetiae_contig10:79146..79220	1622815233.387542-UTR-L-elsbetiae_contig10:79146..79220	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig10 79147..79220 +
1691682784.6376655-UTR-L-elsbetiae_contig10:79146..79220	1691682784.6376655-UTR-L-elsbetiae_contig10:79146..79220	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig10 79147..79220 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815233.3729613-CDS-L-elsbetiae_contig10:78063..79146	1622815233.3729613-CDS-L-elsbetiae_contig10:78063..79146	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig10 78064..79146 +
1691682784.626918-CDS-L-elsbetiae_contig10:78063..79146	1691682784.626918-CDS-L-elsbetiae_contig10:78063..79146	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig10 78064..79146 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig10:77983..79220+
coding sequence from alignment at L-elsbetiae_contig10:77983..79220+

protein sequence of mRNA_L-elsbetiae_contig10.43.1

>prot_L-elsbetiae_contig10.43.1 ID=prot_L-elsbetiae_contig10.43.1|Name=mRNA_L-elsbetiae_contig10.43.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=361bp
MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYII
AFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAA
SVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAP
VAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMA
GVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVA
AHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGF
NFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILP
VAISAPSVVG*

mRNA from alignment at L-elsbetiae_contig10:77983..79220+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig10.43.1 ID=mRNA_L-elsbetiae_contig10.43.1|Name=mRNA_L-elsbetiae_contig10.43.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1238bp|location=Sequence derived from alignment at L-elsbetiae_contig10:77983..79220+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTTTACCTGAAAAAGTAAAATTTTTTTGAAAAGTTATGATTTCCCTGA
GAAGAATTAAAATTAATCTTAAAAAATTATTATGGTTGCAACTTTAGAAA
GACGCGAAGAAAAAAGAGATTGGGGAACATTTGCTACTTGGATTACTAGT
ACTGAAAATCGTTTATACATTGGTTGGTTTGGTTGCTTAATGATCCCTAC
GTTATTAACAGCAGCTTCTTGTTACATCATCGCTTTCATTGCAGCTCCGC
CTGTAGATATCGATGGTATTCGTGAGCCTGTAGCTGGATCTTTATTATAC
GGTAACAACATCATTAGTGGTGCTGTAATACCTAGCTCAAACGCAATTGG
TATCCATTTCTACCCAATTTGGGAAGCTGCTTCAGTTGAAGAATGGTTAT
ATAACGGTGGCCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGTT
GCTTGTTGGATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCG
TCCTTGGATTTTCGTAGCATTTTCTGCTCCAGTAGCAGCAGCTTCTGCGG
TATTCCTAATTTACCCTATCGGTCAAGGTAGTTTCTCTGATGGTATGCCA
TTAGGGATTTCTGGTACATTTAACTTCATGATTGTATTCCAAGCAGAACA
TAACATTTTAATGCACCCGTTCCATATGGCTGGTGTTGCTGGTGTTTTTG
GTGGTTCATTATTCAGTGCTATGCACGGATCTTTAGTTACTTCAAGTTTA
ATTCGTGAAACAAGCGAAGTTGAGTCAGTTAACTACGGTTATAAATTCGG
ACAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGAC
GTTTAATTTTCCAATATGCTAGTTTCAACAACTCTCGAGCTTTACATTTC
TTCCTTGCAGCATGGCCTGTAGTTGGGATCTGGTTAACAGCTTTAGGTGT
AAGTACTATGGCATTTAACTTAAATGGTTTTAACTTTAACCAATCTGTTG
TTGATAGTGAAGGTCGTGTTATAAACACATGGGCTGACATCATCAACCGT
GCAGATTTAGGTATGGAAGTAATGCACGAACGTAACGCTCATAATTTCCC
ATTAGATCTAGCATCTAATGAAATCCTACCTGTTGCAATTTCTGCACCTT
CTGTTGTAGGTTAATTATTAGTGAACTTTAACTTTACTTTTGATAACACT
TTTAGTTAATCTCATTTATGAGACGTGCATGATACGAC

Coding sequence (CDS) from alignment at L-elsbetiae_contig10:77983..79220+

>mRNA_L-elsbetiae_contig10.43.1 ID=mRNA_L-elsbetiae_contig10.43.1|Name=mRNA_L-elsbetiae_contig10.43.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2166bp|location=Sequence derived from alignment at L-elsbetiae_contig10:77983..79220+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGCAACTTTAGAAAGACGCGAAGAAAAAAGAGATTGGGGAACATT
TGCTACTTGGATTACTAGTACTGAAAATCGTTTATACATTGGTTGGTTTG
GTTGCTTAATGATCCCTACGTTATTAACAGCAGCTTCTTGTTACATCATC
GCTTTCATTGCAGCTCCGCCTGTAGATATCGATGGTATTCGTGAGCCTGT
AGCTGGATCTTTATTATACGGTAACAACATCATTAGTGGTGCTGTAATAC
CTAGCTCAAACGCAATTGGTATCCATTTCTACCCAATTTGGGAAGCTGCT
TCAGTTGAAGAATGGTTATATAACGGTGGCCCTTACCAATTAATCGTATT
CCATTTCTTAATTGGTGTTGCTTGTTGGATGGGTCGTGAGTGGGAACTTA
GCTACCGTTTAGGTATGCGTCCTTGGATTTTCGTAGCATTTTCTGCTCCA
GTAGCAGCAGCTTCTGCGGTATTCCTAATTTACCCTATCGGTCAAGGTAG
TTTCTCTGATGGTATGCCATTAGGGATTTCTGGTACATTTAACTTCATGA
TTGTATTCCAAGCAGAACATAACATTTTAATGCACCCGTTCCATATGGCT
GGTGTTGCTGGTGTTTTTGGTGGTTCATTATTCAGTGCTATGCACGGATC
TTTAGTTACTTCAAGTTTAATTCGTGAAACAAGCGAAGTTGAGTCAGTTA
ACTACGGTTATAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCT
GCTCATGGTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTCAACAA
CTCTCGAGCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTGGGATCT
GGTTAACAGCTTTAGGTGTAAGTACTATGGCATTTAACTTAAATGGTTTT
AACTTTAACCAATCTGTTGTTGATAGTGAAGGTCGTGTTATAAACACATG
GGCTGACATCATCAACCGTGCAGATTTAGGTATGGAAGTAATGCACGAAC
GTAACGCTCATAATTTCCCATTAGATCTAGCATCTAATGAAATCCTACCT
GTTGCAATTTCTGCACCTTCTGTTGTAGGTTAAATGGTTGCAACTTTAGA
AAGACGCGAAGAAAAAAGAGATTGGGGAACATTTGCTACTTGGATTACTA
GTACTGAAAATCGTTTATACATTGGTTGGTTTGGTTGCTTAATGATCCCT
ACGTTATTAACAGCAGCTTCTTGTTACATCATCGCTTTCATTGCAGCTCC
GCCTGTAGATATCGATGGTATTCGTGAGCCTGTAGCTGGATCTTTATTAT
ACGGTAACAACATCATTAGTGGTGCTGTAATACCTAGCTCAAACGCAATT
GGTATCCATTTCTACCCAATTTGGGAAGCTGCTTCAGTTGAAGAATGGTT
ATATAACGGTGGCCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTG
TTGCTTGTTGGATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATG
CGTCCTTGGATTTTCGTAGCATTTTCTGCTCCAGTAGCAGCAGCTTCTGC
GGTATTCCTAATTTACCCTATCGGTCAAGGTAGTTTCTCTGATGGTATGC
CATTAGGGATTTCTGGTACATTTAACTTCATGATTGTATTCCAAGCAGAA
CATAACATTTTAATGCACCCGTTCCATATGGCTGGTGTTGCTGGTGTTTT
TGGTGGTTCATTATTCAGTGCTATGCACGGATCTTTAGTTACTTCAAGTT
TAATTCGTGAAACAAGCGAAGTTGAGTCAGTTAACTACGGTTATAAATTC
GGACAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGG
ACGTTTAATTTTCCAATATGCTAGTTTCAACAACTCTCGAGCTTTACATT
TCTTCCTTGCAGCATGGCCTGTAGTTGGGATCTGGTTAACAGCTTTAGGT
GTAAGTACTATGGCATTTAACTTAAATGGTTTTAACTTTAACCAATCTGT
TGTTGATAGTGAAGGTCGTGTTATAAACACATGGGCTGACATCATCAACC
GTGCAGATTTAGGTATGGAAGTAATGCACGAACGTAACGCTCATAATTTC
CCATTAGATCTAGCATCTAATGAAATCCTACCTGTTGCAATTTCTGCACC
TTCTGTTGTAGGTTAA