mRNA_L-elsbetiae_contig16291.4298.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16291.4298.1
Unique NamemRNA_L-elsbetiae_contig16291.4298.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16291.4298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16291contigL-elsbetiae_contig16291:2471..2794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size326
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.7019317-UTR-L-elsbetiae_contig16291:2470..24791622815672.7019317-UTR-L-elsbetiae_contig16291:2470..2479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16291 2471..2479 +
1691683028.969238-UTR-L-elsbetiae_contig16291:2470..24791691683028.969238-UTR-L-elsbetiae_contig16291:2470..2479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16291 2471..2479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.712811-CDS-L-elsbetiae_contig16291:2479..27941622815672.712811-CDS-L-elsbetiae_contig16291:2479..2794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16291 2480..2794 +
1691683028.9781718-CDS-L-elsbetiae_contig16291:2479..27941691683028.9781718-CDS-L-elsbetiae_contig16291:2479..2794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16291 2480..2794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16291.4298.1prot_L-elsbetiae_contig16291.4298.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16291 2480..2794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16291.4298.1

>prot_L-elsbetiae_contig16291.4298.1 ID=prot_L-elsbetiae_contig16291.4298.1|Name=mRNA_L-elsbetiae_contig16291.4298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MLLNPWMLSCLTCFFIFFIARAHLGPTLCFRLGCRVERRYLCCVVREYAS
GGNNMPAAAKTRLPGVLFVLDGEDKCILTAACLTPLLSCFSRFSVLLLKH
AHMLF
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mRNA from alignment at L-elsbetiae_contig16291:2471..2794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16291.4298.1 ID=mRNA_L-elsbetiae_contig16291.4298.1|Name=mRNA_L-elsbetiae_contig16291.4298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig16291:2471..2794+ (Laminarionema elsbetiae ELsaHSoW15)
GAATAAGCCATGCTATTGAACCCGTGGATGCTGTCTTGCTTGACTTGTTT
TTTTATTTTTTTTATCGCACGCGCACACCTTGGACCCACTCTCTGTTTTC
GGTTGGGGTGCAGGGTGGAACGTCGCTATCTATGCTGTGTAGTTCGTGAA
TACGCCAGTGGTGGCAACAATATGCCGGCTGCGGCAAAAACTCGGCTTCC
TGGTGTGTTGTTTGTTCTGGATGGCGAGGATAAGTGCATACTAACTGCCG
CTTGTTTGACGCCGCTTTTGTCGTGCTTCAGCCGCTTCTCTGTGCTGTTG
TTGAAACATGCCCACATGCTGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16291:2471..2794+

>mRNA_L-elsbetiae_contig16291.4298.1 ID=mRNA_L-elsbetiae_contig16291.4298.1|Name=mRNA_L-elsbetiae_contig16291.4298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig16291:2471..2794+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTATTGAACCCGTGGATGCTGTCTTGCTTGACTTGTTTTTTTATTTT
TTTTATCGCACGCGCACACCTTGGACCCACTCTCTGTTTTCGGTTGGGGT
GCAGGGTGGAACGTCGCTATCTATGCTGTGTAGTTCGTGAATACGCCAGT
GGTGGCAACAATATGCCGGCTGCGGCAAAAACTCGGCTTCCTGGTGTGTT
GTTTGTTCTGGATGGCGAGGATAAGTGCATACTAACTGCCGCTTGTTTGA
CGCCGCTTTTGTCGTGCTTCAGCCGCTTCTCTGTGCTGTTGTTGAAACAT
GCCCACATGCTGTTTATGCTATTGAACCCGTGGATGCTGTCTTGCTTGAC
TTGTTTTTTTATTTTTTTTATCGCACGCGCACACCTTGGACCCACTCTCT
GTTTTCGGTTGGGGTGCAGGGTGGAACGTCGCTATCTATGCTGTGTAGTT
CGTGAATACGCCAGTGGTGGCAACAATATGCCGGCTGCGGCAAAAACTCG
GCTTCCTGGTGTGTTGTTTGTTCTGGATGGCGAGGATAAGTGCATACTAA
CTGCCGCTTGTTTGACGCCGCTTTTGTCGTGCTTCAGCCGCTTCTCTGTG
CTGTTGTTGAAACATGCCCACATGCTGTTT
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