mRNA_L-elsbetiae_contig1629.4296.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1629.4296.1
Unique NamemRNA_L-elsbetiae_contig1629.4296.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1629.4296.1 vs. uniprot
Match: D8LUA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA1_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 9.450e-48
Identity = 101/214 (47.20%), Postives = 129/214 (60.28%), Query Frame = 1 
Query:    1 MVLDADILSVVMRYVDTLEKMPSSACTSTPLGDDDDAVRGGAECRCVSKRWRMSIEDAIGRDLPPMASISLASLLRPGRLSFVLLSCRY---HHDEHGVVSAYDGVVSRAEAAGLRLREAVGASTLPAVNCSGTAGAGGGEPASG-SSNDLRTKIGTCDGNRDCLCYRVALKRIVGEALRNPAFSWCSSLGPEDSFLLEGCVGASSLLQARWFS 630
            M L+AD+LSVV+ +VD+LE  P S   +  +      V+GGAECR V + WR+++E  IGR LPPM  +SLA+LL PGRL  VLLSC+Y      EH   +A+  +VSRA+A                      AGA  G P+ G  + +     G  + N   +C RVALKRIV EAL +PAFSWCS+LG +DS LLE CVGASSL+ ARWFS
Sbjct:    1 MTLEADVLSVVLEFVDSLEGAPPSEEVAHVV------VQGGAECRAVCRSWRITVEKTIGRVLPPMTPVSLAALLVPGRLRGVLLSCQYLGREFHEHAAAAAFVALVSRADAXXXXXXXXX---XXXXXXXXXXAGAPRGVPSQGVMAEEAAGGEGIINNNTSFVCCRVALKRIVREALDSPAFSWCSTLGLDDSRLLESCVGASSLVNARWFS 205
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1629.4296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUA1_ECTSI9.450e-4847.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1629contigL-elsbetiae_contig1629:9506..10141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004240.1
Exons1
Model size636
Cds size636
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.5964136-CDS-L-elsbetiae_contig1629:9505..101411622815672.5964136-CDS-L-elsbetiae_contig1629:9505..10141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1629 9506..10141 -
1691683028.8992908-CDS-L-elsbetiae_contig1629:9505..101411691683028.8992908-CDS-L-elsbetiae_contig1629:9505..10141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1629 9506..10141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1629.4296.1prot_L-elsbetiae_contig1629.4296.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1629 9506..10141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1629.4296.1

>prot_L-elsbetiae_contig1629.4296.1 ID=prot_L-elsbetiae_contig1629.4296.1|Name=mRNA_L-elsbetiae_contig1629.4296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MVLDADILSVVMRYVDTLEKMPSSACTSTPLGDDDDAVRGGAECRCVSKR
WRMSIEDAIGRDLPPMASISLASLLRPGRLSFVLLSCRYHHDEHGVVSAY
DGVVSRAEAAGLRLREAVGASTLPAVNCSGTAGAGGGEPASGSSNDLRTK
IGTCDGNRDCLCYRVALKRIVGEALRNPAFSWCSSLGPEDSFLLEGCVGA
SSLLQARWFSE*
back to top

mRNA from alignment at L-elsbetiae_contig1629:9506..10141-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1629.4296.1 ID=mRNA_L-elsbetiae_contig1629.4296.1|Name=mRNA_L-elsbetiae_contig1629.4296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1629:9506..10141- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCTGGATGCAGACATTCTGAGCGTGGTTATGCGGTATGTGGATAC
TCTCGAGAAGATGCCATCATCAGCATGTACTTCAACACCGCTCGGTGATG
ATGATGATGCAGTTCGAGGTGGAGCAGAGTGCCGCTGTGTAAGTAAACGC
TGGCGCATGTCGATCGAGGATGCTATCGGGCGGGATCTTCCTCCCATGGC
TTCCATCTCGTTGGCCTCCTTGCTCAGGCCTGGCAGACTCAGCTTCGTGC
TCCTCTCCTGCCGATACCATCATGATGAGCATGGCGTCGTCAGCGCATAT
GATGGCGTCGTCTCGAGAGCGGAAGCGGCGGGCCTTCGTCTGCGCGAGGC
AGTTGGTGCATCTACATTGCCTGCAGTGAACTGCAGCGGGACGGCAGGAG
CAGGGGGGGGTGAGCCCGCAAGTGGCAGCAGCAACGATCTAAGAACTAAA
ATCGGCACTTGCGATGGGAATCGTGACTGCCTCTGCTACCGGGTAGCGCT
GAAGCGAATTGTGGGAGAAGCATTGAGGAACCCGGCCTTCTCGTGGTGCA
GCTCTCTCGGTCCCGAGGACTCATTCCTGCTTGAGGGCTGCGTGGGGGCA
TCTTCCCTTCTGCAAGCGAGATGGTTTTCAGAATAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1629:9506..10141-

>mRNA_L-elsbetiae_contig1629.4296.1 ID=mRNA_L-elsbetiae_contig1629.4296.1|Name=mRNA_L-elsbetiae_contig1629.4296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig1629:9506..10141- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCTGGATGCAGACATTCTGAGCGTGGTTATGCGGTATGTGGATAC
TCTCGAGAAGATGCCATCATCAGCATGTACTTCAACACCGCTCGGTGATG
ATGATGATGCAGTTCGAGGTGGAGCAGAGTGCCGCTGTGTAAGTAAACGC
TGGCGCATGTCGATCGAGGATGCTATCGGGCGGGATCTTCCTCCCATGGC
TTCCATCTCGTTGGCCTCCTTGCTCAGGCCTGGCAGACTCAGCTTCGTGC
TCCTCTCCTGCCGATACCATCATGATGAGCATGGCGTCGTCAGCGCATAT
GATGGCGTCGTCTCGAGAGCGGAAGCGGCGGGCCTTCGTCTGCGCGAGGC
AGTTGGTGCATCTACATTGCCTGCAGTGAACTGCAGCGGGACGGCAGGAG
CAGGGGGGGGTGAGCCCGCAAGTGGCAGCAGCAACGATCTAAGAACTAAA
ATCGGCACTTGCGATGGGAATCGTGACTGCCTCTGCTACCGGGTAGCGCT
GAAGCGAATTGTGGGAGAAGCATTGAGGAACCCGGCCTTCTCGTGGTGCA
GCTCTCTCGGTCCCGAGGACTCATTCCTGCTTGAGGGCTGCGTGGGGGCA
TCTTCCCTTCTGCAAGCGAGATGGTTTTCAGAATAGATGGTGCTGGATGC
AGACATTCTGAGCGTGGTTATGCGGTATGTGGATACTCTCGAGAAGATGC
CATCATCAGCATGTACTTCAACACCGCTCGGTGATGATGATGATGCAGTT
CGAGGTGGAGCAGAGTGCCGCTGTGTAAGTAAACGCTGGCGCATGTCGAT
CGAGGATGCTATCGGGCGGGATCTTCCTCCCATGGCTTCCATCTCGTTGG
CCTCCTTGCTCAGGCCTGGCAGACTCAGCTTCGTGCTCCTCTCCTGCCGA
TACCATCATGATGAGCATGGCGTCGTCAGCGCATATGATGGCGTCGTCTC
GAGAGCGGAAGCGGCGGGCCTTCGTCTGCGCGAGGCAGTTGGTGCATCTA
CATTGCCTGCAGTGAACTGCAGCGGGACGGCAGGAGCAGGGGGGGGTGAG
CCCGCAAGTGGCAGCAGCAACGATCTAAGAACTAAAATCGGCACTTGCGA
TGGGAATCGTGACTGCCTCTGCTACCGGGTAGCGCTGAAGCGAATTGTGG
GAGAAGCATTGAGGAACCCGGCCTTCTCGTGGTGCAGCTCTCTCGGTCCC
GAGGACTCATTCCTGCTTGAGGGCTGCGTGGGGGCATCTTCCCTTCTGCA
AGCGAGATGGTTTTCAGAATAG
back to top