mRNA_L-elsbetiae_contig16287.4293.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16287.4293.1
Unique NamemRNA_L-elsbetiae_contig16287.4293.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Match: A0A6H5L421_9PHAE (Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L421_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.890e-24
Identity = 47/55 (85.45%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWWRQQAR 165
            +TVDQYFYGAN TI+ AGVQYILDSV+SALE++PERKFVYAEQAF+WRWWRQQAR
Sbjct:   68 KTVDQYFYGANNTIAHAGVQYILDSVVSALEEDPERKFVYAEQAFLWRWWRQQAR 122
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BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Match: D7FJT1_ECTSI (Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT1_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.170e-23
Identity = 46/55 (83.64%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWWRQQAR 165
            +TVDQYFYGAN TI+ AGVQYILDSV+SALE++PERKFVYAEQAF+WRWWRQQ R
Sbjct:   43 KTVDQYFYGANNTIAHAGVQYILDSVVSALEEDPERKFVYAEQAFLWRWWRQQDR 97
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BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Match: A0A813QL36_ADIRI (Alpha-mannosidase n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A813QL36_ADIRI)

HSP 1 Score: 86.7 bits (213), Expect = 1.720e-18
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWWRQQARE 168
            +TVDQY+YGA   I  AGVQY+LDSV+ ALEDNP+R+F+Y E AF WRWW QQ  E
Sbjct:  279 KTVDQYYYGARNNIQHAGVQYVLDSVVRALEDNPDRRFIYVEMAFFWRWWNQQTDE 334
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BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Match: A0A820EY45_9BILA (Hypothetical protein (Fragment) n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820EY45_9BILA)

HSP 1 Score: 80.9 bits (198), Expect = 2.160e-18
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWWRQQARE 168
            +TVDQY+YGA   I  AGVQYI+DSV+ ALE NP+R+F+Y E  F WRWW QQ  E
Sbjct:   57 KTVDQYYYGARNNIQHAGVQYIIDSVMHALEQNPDRRFIYVEIGFFWRWWSQQTEE 112
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BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Match: A0A820IQQ6_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A820IQQ6_9BILA)

HSP 1 Score: 81.3 bits (199), Expect = 2.300e-18
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWWRQQA 162
            +TVDQY+YGA   I  AGVQYILDSV+ AL++NP+R+F+Y E  F WRWW QQA
Sbjct:   58 KTVDQYYYGARNDIQHAGVQYILDSVMMALDENPDRRFIYVEIGFFWRWWNQQA 111
[Close]
BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Match: A0A814HU12_9BILA (Alpha-mannosidase n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814HU12_9BILA)

HSP 1 Score: 85.9 bits (211), Expect = 3.210e-18
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWWRQQARE 168
            +TVDQYFYGA   I  AGVQYILDSVI +L  NPER+F+Y E AF WRWW QQA E
Sbjct:   27 KTVDQYFYGARNNIQHAGVQYILDSVIQSLVQNPERRFIYVEMAFFWRWWNQQASE 82
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BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Match: A0A820PX14_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820PX14_9BILA)

HSP 1 Score: 80.1 bits (196), Expect = 3.440e-18
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWWRQQARE 168
            +TVDQYFYGA   I  AGVQYILDSV  +L +NP+R+FVY E AF WRWW QQ  E
Sbjct:   40 KTVDQYFYGARNDIQHAGVQYILDSVTESLVENPDRRFVYVEIAFFWRWWMQQTDE 95
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BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Match: A0A819KQS7_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819KQS7_9BILA)

HSP 1 Score: 80.1 bits (196), Expect = 5.220e-18
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWWRQQARE 168
            +TVDQY+YG+   I   GVQYILDSV+ AL +NP+R+F+Y E AF WRWW QQ+ E
Sbjct:   55 KTVDQYYYGSRSEICNRGVQYILDSVVLALTENPDRRFIYVEMAFFWRWWNQQSEE 110
[Close]
BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Match: A0A818JP62_9BILA (Alpha-mannosidase n=10 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818JP62_9BILA)

HSP 1 Score: 84.7 bits (208), Expect = 8.170e-18
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWWRQQARE 168
            +TVDQY+YGA   I  AGVQYILDSVI +LE+NP+R+F+Y E AF WRWW QQ+ E
Sbjct:  176 KTVDQYYYGARNNIQHAGVQYILDSVIHSLEENPDRRFIYVEIAFFWRWWNQQSNE 231
[Close]
BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Match: A0A818Z1T0_9BILA (Alpha-mannosidase n=9 Tax=Rotaria sordida TaxID=392033 RepID=A0A818Z1T0_9BILA)

HSP 1 Score: 84.7 bits (208), Expect = 8.170e-18
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWWRQQARE 168
            +TVDQY+YGA + I  AGVQYILDSVI +LE+NP+R+F+Y E AF WRWW QQ  E
Sbjct:  176 KTVDQYYYGARENIQHAGVQYILDSVIHSLEENPDRRFIYVEIAFFWRWWNQQTNE 231
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16287.4293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L421_9PHAE4.890e-2485.45Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D7FJT1_ECTSI3.170e-2383.64Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A813QL36_ADIRI1.720e-1866.07Alpha-mannosidase n=3 Tax=Adineta ricciae TaxID=24... [more]
A0A820EY45_9BILA2.160e-1862.50Hypothetical protein (Fragment) n=1 Tax=Adineta st... [more]
A0A820IQQ6_9BILA2.300e-1864.81Hypothetical protein n=2 Tax=Rotaria TaxID=231623 ... [more]
A0A814HU12_9BILA3.210e-1869.64Alpha-mannosidase n=1 Tax=Didymodactylos carnosus ... [more]
A0A820PX14_9BILA3.440e-1866.07Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A819KQS7_9BILA5.220e-1860.71Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
A0A818JP62_9BILA8.170e-1866.07Alpha-mannosidase n=10 Tax=Rotaria sp. Silwood1 Ta... [more]
A0A818Z1T0_9BILA8.170e-1866.07Alpha-mannosidase n=9 Tax=Rotaria sordida TaxID=39... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16287contigL-elsbetiae_contig16287:2931..3098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog2880.D7FJT1
KEGG koko:K01191,ko:K12311
KEGG ReactionR08717,R08718
KEGG Pathwayko00511,ko04142,map00511,map04142
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005774,GO:0005775,GO:0005975,GO:0005996,GO:0006013,GO:0006464,GO:0006517,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009100,GO:0009311,GO:0009313,GO:0009505,GO:0009987,GO:0012505,GO:0015923,GO:0016020,GO:0016052,GO:0016192,GO:0016787,GO:0016798,GO:0019318,GO:0019538,GO:0030141,GO:0030312,GO:0031090,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035578,GO:0036211,GO:0036230,GO:0042119,GO:0042582,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:1901135,GO:1901564,GO:1901575
EggNOG free text desc.mannose metabolic process
EggNOG OGsKOG1959@1,KOG1959@2759
EC3.2.1.24
COG Functional cat.G
CAZyGH38
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.3171704-CDS-L-elsbetiae_contig16287:2930..30981622815672.3171704-CDS-L-elsbetiae_contig16287:2930..3098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16287 2931..3098 +
1691683028.689898-CDS-L-elsbetiae_contig16287:2930..30981691683028.689898-CDS-L-elsbetiae_contig16287:2930..3098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16287 2931..3098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16287.4293.1prot_L-elsbetiae_contig16287.4293.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16287 2931..3098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16287.4293.1

>prot_L-elsbetiae_contig16287.4293.1 ID=prot_L-elsbetiae_contig16287.4293.1|Name=mRNA_L-elsbetiae_contig16287.4293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
QTVDQYFYGANKTISPAGVQYILDSVISALEDNPERKFVYAEQAFMWRWW
RQQARE
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mRNA from alignment at L-elsbetiae_contig16287:2931..3098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16287.4293.1 ID=mRNA_L-elsbetiae_contig16287.4293.1|Name=mRNA_L-elsbetiae_contig16287.4293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=168bp|location=Sequence derived from alignment at L-elsbetiae_contig16287:2931..3098+ (Laminarionema elsbetiae ELsaHSoW15)
CAGACGGTGGATCAGTATTTCTACGGCGCCAACAAGACGATTTCACCGGC
GGGCGTGCAGTACATCTTGGACAGCGTGATTAGCGCCTTAGAGGACAACC
CAGAGAGGAAGTTCGTGTACGCTGAGCAGGCCTTCATGTGGCGATGGTGG
CGGCAGCAGGCGAGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16287:2931..3098+

>mRNA_L-elsbetiae_contig16287.4293.1 ID=mRNA_L-elsbetiae_contig16287.4293.1|Name=mRNA_L-elsbetiae_contig16287.4293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig16287:2931..3098+ (Laminarionema elsbetiae ELsaHSoW15)
CAGACGGTGGATCAGTATTTCTACGGCGCCAACAAGACGATTTCACCGGC
GGGCGTGCAGTACATCTTGGACAGCGTGATTAGCGCCTTAGAGGACAACC
CAGAGAGGAAGTTCGTGTACGCTGAGCAGGCCTTCATGTGGCGATGGTGG
CGGCAGCAGGCGAGAGAGCAGACGGTGGATCAGTATTTCTACGGCGCCAA
CAAGACGATTTCACCGGCGGGCGTGCAGTACATCTTGGACAGCGTGATTA
GCGCCTTAGAGGACAACCCAGAGAGGAAGTTCGTGTACGCTGAGCAGGCC
TTCATGTGGCGATGGTGGCGGCAGCAGGCGAGAGAG
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