mRNA_L-elsbetiae_contig10429.429.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10429.429.1 vs. uniprot
Match: D7G9G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G4_ECTSI) HSP 1 Score: 361 bits (927), Expect = 9.120e-119 Identity = 192/238 (80.67%), Postives = 201/238 (84.45%), Query Frame = 2 Query: 731 ADTMDRAKFLRRAVAISVAAATGGVAASSALQPSLAADFMATEFVDFVDSRGLFGCRIPKNFLRAERPKDKRGTVFVAGDYSKAEVISVQVVTTFDLLTDAGLPTIGDLTTWENVGKPTAVADLLKQRRDSDAAGGGQVESVVLPGATVDGDVLHFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWEQEGGAKERLEVAADSFRLEGLVVDGVRLGA 1444 AD RA FLR A A S QPS AA+ ATEFVDF DSRGLF CRIPKNFLRAER KDKRGTVFVAGDYSKAEV+SVQVV TFDLLTDAGLPTIGDLT WENVGKP A+ADLLKQRRDSDAAGG VESVVLPG T+DGDVL F LKSPIKVMR DLLEKEQGVSELYRNTYVKAIMRGDGSFLV+WAGALNTDW+QEGGAK+RL+VA DSFRLEGL+VDGVRLGA Sbjct: 3 ADMDSRAGFLRTAAAXXXXXXXXXXXXXS--QPSSAAEVAATEFVDFEDSRGLFSCRIPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVKTFDLLTDAGLPTIGDLTKWENVGKPAAIADLLKQRRDSDAAGGTPVESVVLPGVTLDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWDQEGGAKDRLKVATDSFRLEGLIVDGVRLGA 238
BLAST of mRNA_L-elsbetiae_contig10429.429.1 vs. uniprot
Match: A0A6H5KHB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB6_9PHAE) HSP 1 Score: 352 bits (902), Expect = 4.860e-114 Identity = 177/206 (85.92%), Postives = 188/206 (91.26%), Query Frame = 2 Query: 827 PSLAADFMATEFVDFVDSRGLFGCRIPKNFLRAERPKDKRGTVFVAGDYSKAEVISVQVVTTFDLLTDAGLPTIGDLTTWENVGKPTAVADLLKQRRDSDAAGGGQVESVVLPGATVDGDVLHFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWEQEGGAKERLEVAADSFRLEGLVVDGVRLGA 1444 PS AA+ ATEFVDF DSRGLF C IPKNFLRAER KDKRGTVFVAGDYSKAEV+SVQVV FDLLTDAGLPT+GDLT WENVGKP A+ADLLKQRRDSDAAGG VESVVLPG T+DGDVL F LKSPIKVMR DLLEKEQGVSELYRNTYVKAIMRGDGSFLV+WAGALNTDW+QEGGAK+RL+VA DSFRLEGL+V+GVRLGA Sbjct: 97 PSSAAEVAATEFVDFEDSRGLFSCLIPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVKAFDLLTDAGLPTVGDLTKWENVGKPAAIADLLKQRRDSDAAGGTPVESVVLPGVTLDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWDQEGGAKDRLKVATDSFRLEGLIVEGVRLGA 302
BLAST of mRNA_L-elsbetiae_contig10429.429.1 vs. uniprot
Match: A0A835Z4Q3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q3_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.270e-43 Identity = 107/228 (46.93%), Postives = 135/228 (59.21%), Query Frame = 2 Query: 761 RRAVAISVAAATGGVAA----SSALQPSLAADFMATEFVDFVDSRGLFGCRIPKNFLRAERPKDK--RGTVFVAGDYSKAEVISVQVVTTFDLLTDAG-----LPTIGDLTTWENVGKPTAVADLLKQRRDSDAAGGGQVESVVLPGATV-DGDVLHFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWEQEGGAKERLEVAADSFRL 1408 RR A A+A GV + A PSLAA + DSRG F +P N++RAER D+ +G +FV G+Y KA +SV ++ + LL DAG LPT DLTTW VG P +A LL RRD DAA +S VLP V DG+ L F +K+ + V R DLLEKE+GV ELYR TY KA+MRGDG+FL+ WAGALNT+W + A++ L SF L Sbjct: 11 RRRFAAGTASAIAGVLLLPQPTVAEVPSLAA---------YSDSRGYFEISLPANWVRAERKGDQEAKGVLFVTGNYVKAITLSVAIIKSSQLLRDAGTAPLVLPT-DDLTTWAGVGTPMGIAKLLAFRRDQDAAQAAAQDSEVLPDTVVLDGNALTFMIKTRVPVQRPDLLEKERGVRELYRLTYGKALMRGDGTFLLCWAGALNTEWGEPTNARDTLAAVVASFHL 228
BLAST of mRNA_L-elsbetiae_contig10429.429.1 vs. uniprot
Match: A0A7S0QY41_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QY41_9CRYP) HSP 1 Score: 126 bits (317), Expect = 2.150e-29 Identity = 78/177 (44.07%), Postives = 101/177 (57.06%), Query Frame = 2 Query: 839 ADFMATEFVDFVDSRGL---FGCRIPKNFLRAERPKDKRGTVFVAGDYSKAEVISVQVVTTFDLLTDAGLPTIGDLTTWENVGKPTAVADLLKQRRDSDAAGGGQVESVVLPGAT-VDGDVLHFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWEQ 1357 AD E+ F + GL F IPK F +++RP GT+FVAG AE++SVQ+V+ LL D G+ GDL+TWE +G A+ADLL RD DA G + S V P + V G L F + I V R D L + QG+SEL R T +A +R DG+ LVLWA AL DW + Sbjct: 63 ADAEVYEYSAFKEDGGLDAVFRADIPKEFFKSKRPLTN-GTIFVAGSLQTAEIVSVQIVSIPQLLADIGVLPTGDLSTWEAIGSAKAIADLLTSNRDGDAKQRGGLASKVDPASVAVSGRTLSFRTAATIAVQRPDKLLETQGISELRRITRARAEIRRDGTALVLWASALEQDWNK 238
BLAST of mRNA_L-elsbetiae_contig10429.429.1 vs. uniprot
Match: K0RXZ5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXZ5_THAOC) HSP 1 Score: 117 bits (292), Expect = 1.260e-25 Identity = 92/232 (39.66%), Postives = 123/232 (53.02%), Query Frame = 2 Query: 761 RRAVAISVAAATGGVAASSALQPSLAADFMATEFVDFVDSRGLFGCRIPKNFLRAER------PKDKRG------TVFVAGDYSKAEVISVQVVTTFDLLTDAGLPTIGDLTTWENVGKPTAVADLLKQRRDSDAAGGGQV-----ESVVLPGATVDGDVLHFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMRG-DGSFLVLWAGALNTDWEQEGGAKERLEVAADSF 1402 RRA+ S +A VAAS AL A D FVD + LF +P+ F R P +K G T+F AGD SKAEV++V+ LL + G +GDL+T+E +G PTA+A LL +RR+ D G V +SVV+ T DG L FT+K I V + +LL +E GVS L+R T KA + DG+ LV++A AL+ D+ G R V DSF Sbjct: 44 RRAMVASTLSAAVSVAASKALAEE-ATDVPMKLFVDTANP-SLFAINVPQRFFAIRRSAKGDLPDEKTGKGRRGGTIFSAGDMSKAEVVAVERFPVKVLLEEEGYSPLGDLSTFEAIGDPTAIATLLLRRREKDRPGNVSVAVLDKDSVVV---TEDGKTLKFTMKQEISVQKPELLMEEMGVSRLFRTTVAKATLSSNDGNLLVVFASALDQDFSGPDGVALRKTV--DSF 268
BLAST of mRNA_L-elsbetiae_contig10429.429.1 vs. uniprot
Match: A0A7S2MYB7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MYB7_9EUKA) HSP 1 Score: 77.4 bits (189), Expect = 3.030e-12 Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 2 Query: 872 VDSRGLFGCRIPKNFLRAERPKDKRGTVFVAGDYSKAEVISVQVVTTFDLLTD-------AGLP---TIGDLTT---WENVGKPTAVADLLKQRRDSDAAGGGQVESVVLPGATVDGDVLHFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMR----GDGS----FLVLWAGALNTDWEQEGGAKERLEVAADSF 1402 +D+ F IP +F+ ++R K GT+FVAG++ +A VISV LL D GLP I + T + ++G +VA LL + RD DA+ G ++ L + DG L F + + V D LE+++GV +L R T +++ GDG+ +W AL DW+++ K LE SF Sbjct: 45 LDAASRFALDIPDDFVVSKR-KAVTGTLFVAGNFPRASVISVTAWPLDALLQDDARSRALPGLPQELVIAEHATPLSFTDIGSAKSVAQLLLRARDRDASSGALQSALTLSQLSSDGSRLEFECATELPVSDPDALEEQRGVRQLIRRTRAASVLGSVPGGDGAPVPALFSVWGSALEQDWDKD--LKAPLEKTVSSF 239 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10429.429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10429.429.1 >prot_L-elsbetiae_contig10429.429.1 ID=prot_L-elsbetiae_contig10429.429.1|Name=mRNA_L-elsbetiae_contig10429.429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp MDRAKFLRRAVAISVAAATGGVAASSALQPSLAADFMATEFVDFVDSRGLback to top mRNA from alignment at L-elsbetiae_contig10429:2..3100+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10429.429.1 ID=mRNA_L-elsbetiae_contig10429.429.1|Name=mRNA_L-elsbetiae_contig10429.429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3099bp|location=Sequence derived from alignment at L-elsbetiae_contig10429:2..3100+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10429:2..3100+ >mRNA_L-elsbetiae_contig10429.429.1 ID=mRNA_L-elsbetiae_contig10429.429.1|Name=mRNA_L-elsbetiae_contig10429.429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1422bp|location=Sequence derived from alignment at L-elsbetiae_contig10429:2..3100+ (Laminarionema elsbetiae ELsaHSoW15)back to top |