mRNA_L-elsbetiae_contig1627.4284.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1627.4284.1
Unique NamemRNA_L-elsbetiae_contig1627.4284.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Match: I1I9S2_BRADI (Uncharacterized protein n=4 Tax=Brachypodium distachyon TaxID=15368 RepID=I1I9S2_BRADI)

HSP 1 Score: 74.7 bits (182), Expect = 6.030e-13
Identity = 63/171 (36.84%), Postives = 92/171 (53.80%), Query Frame = 1
Query:    4 PIHAAVGKE--DILRLLLSNDSADKDELDHEGNSPLFLAVREGHVPSVKFLLTAGA-----DSGLRAIAALA--RHGAVLNDALQHATIHSK-----------------LKVVVALLEAGADPNEANFEGCTPMLTAAESWPSEEVLRALLRHGAQIDVTDNFGRTPLHIA 438
            P+  A+G E  D++R LL++D AD ++L+ +G +PL++A   G    V+ LL+ GA      +G  A+ A A  RH  V+   L H   H+K                 LK V  LLEAGAD N   FE  TP++ AA    ++ +L+ L+  GA  +V D+FGRTP+ IA
Sbjct:  118 PLTFAIGFENVDVVRYLLNHD-ADTEKLNEDGLTPLYVAAAIGQCEIVEVLLSKGAHIDALSTGETALHAAAHGRHDNVVKILLDHCADHNKINFGDCTPLVCAIDARSLKCVKLLLEAGADVNCVGFE--TPLIVAAGIGLTD-ILKCLVLAGADPNVHDSFGRTPVEIA 284          
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Match: A0A183TWN7_TOXCA (Asparaginase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183TWN7_TOXCA)

HSP 1 Score: 72.0 bits (175), Expect = 5.530e-12
Identity = 52/159 (32.70%), Postives = 76/159 (47.80%), Query Frame = 1
Query:   10 HAAVGKEDILRLLLSNDSADKDELDHEGNSPLFLAVREGHVPSVKFLLTAGAD------------------SGLRAIAALARHGAVLNDA-LQHATIHSKLKVVVALLEAGADPNEANFEGCTPMLTAAESWPSEEVLRALLRHGAQIDVTDNFGRTPL 429
            HAA   +  L + L    A     D+ G +PL +A   GHV +V FLLT GA+                    L  I AL   GA+L    +  +     LK + A + AGA+PNE +++G T +  A E+  ++E+   LL+HGA  +  D FG TP+
Sbjct:  194 HAARNGDIDLLVNLRESGASFSAPDYNGRTPLHVAASAGHVNTVHFLLTQGANVHARDQWDENALLSAIRSKNLDCIRALRNAGALLGSIEMCSSASQQDLKTLTAWIMAGANPNETDYDGRTALHFAVENG-NKEITEYLLKHGANAEAVDKFGNTPI 351          
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Match: A0A0B2VM50_TOXCA (Asparaginase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2VM50_TOXCA)

HSP 1 Score: 69.7 bits (169), Expect = 4.420e-11
Identity = 52/165 (31.52%), Postives = 76/165 (46.06%), Query Frame = 1
Query:   10 HAAVGKEDILRLLLSNDSADKDELDHEGNSPLFLAVREGHVPSVKFLLTAGAD------------------SGLRAIAALARHGAVLNDA-------LQHATIHSKLKVVVALLEAGADPNEANFEGCTPMLTAAESWPSEEVLRALLRHGAQIDVTDNFGRTPL 429
            HAA   +  L + L    A     D+ G +PL +A   GHV +V FLLT GA+                    L  I AL   GA+L          +  +     LK + A + AGA+PNE +++G T +  A E+  ++E+   LL+HGA  +  D FG TP+
Sbjct:  512 HAARNGDIDLLVNLRESGASFSAPDYNGRTPLHVAASAGHVNTVHFLLTQGANVHARDQWDENALLSAIRSKNLDCIRALRNAGALLGSKSIDLGIEMCSSASQQDLKTLTAWIMAGANPNETDYDGRTALHFAVENG-NKEITEYLLKHGANAEAVDKFGNTPI 675          
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Match: D3B406_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B406_POLPP)

HSP 1 Score: 68.6 bits (166), Expect = 9.790e-11
Identity = 45/128 (35.16%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   82 DHEGNSPLFLAVREGHVPSVKFLLTAGADSGLRAIAALARHGAVLNDALQHATIHSKLKVVVALLEAGADPNEANFEGCTPMLTAAESWPSEEVLRALLRHGAQIDVTDN-------FGR--TPLHIA 438
            D  G +PL +AV +GH+ +V+ LL+ G D   R      R  A L+ A+ H   +  ++++ +LLEAGA  N+   E  TP+  A E   S ++++ LL+HGA +++ DN       + R  TPLH+A
Sbjct:  186 DKFGVTPLHIAVGQGHLETVRLLLSEGVDVNARDKKQFVRLSA-LHLAIDHR--YPNIEIIESLLEAGAKVNQETTERRTPIFKAIEKGHSYDIIKLLLKHGASVNIQDNPRTNGWEYYRVMTPLHLA 310          
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Match: A0A2P8Z3U4_BLAGE (NACHT domain-containing protein (Fragment) n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8Z3U4_BLAGE)

HSP 1 Score: 67.0 bits (162), Expect = 4.160e-10
Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   46 LLSNDSADKDELDHEGNSPLFLAVREGHVPSVKFLLTAGADSGLRAIAALARHGAVLNDALQHATIHSKLKVVVALLEAGADPNEANFEGCTPMLTAAESWPSEEVLRALLRHGAQIDVTDNFGRTPLHIA 438
            LL N   D D ++ EG +PL  AV+ G+      LL  GA+         A+ G   N  + +A + + +KVV  LLE   D +  N  G TP+L A E   +EE+   LL+HGA  +  D +GRTP+H A
Sbjct: 1488 LLLNFECDFDGINREGETPLLTAVKLGNKELAIKLLKDGANPN-------AKDG-YGNTPMHYAAVMNLVKVVDCLLELKCDIDSTNRGGETPLLKAIER-ENEEIAITLLKHGANPNAKDEYGRTPMHYA 1609          
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Match: A0A0Q7W9G2_9HYPH (Cytochrome C n=2 Tax=Mesorhizobium sp. Root552 TaxID=1736555 RepID=A0A0Q7W9G2_9HYPH)

HSP 1 Score: 63.5 bits (153), Expect = 4.030e-9
Identity = 50/148 (33.78%), Postives = 77/148 (52.03%), Query Frame = 1
Query:    1 APIHAAVGKEDILRLLLSNDS-ADKDELDHEGNSPLFLAVREGHVPSVKFLLTAGADSGLRAIAALARHGAVLNDALQHATIHSKLKVVVALLEAGADPNEA-NFEGCTPMLTAAESWPSEEVLRALLRHGAQIDVTDNFGRTPLHIA 438
            A IH A  K D+  +  + D+ A  DE D +  +PL+LAVR GH+ + K L+  GAD+        A    +L  AL  A    ++ ++  LL+ GA+PNE  N E    +L  A      + ++AL+  GA ++     G+TPLH+A
Sbjct:   22 AAIHDAAKKGDVAAIAAALDAGAGVDESDGQA-TPLYLAVRGGHLAAAKLLMERGADAN-------AVTTPLLGSALMPALAKRRIDLIDLLLDGGANPNERRNRES---VLHIAVRSGCLDCVKALVEAGADVNAKTKDGKTPLHLA 158          
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Match: UPI001F5DC8A4 (26S proteasome non-ATPase regulatory subunit 10-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DC8A4)

HSP 1 Score: 62.8 bits (151), Expect = 9.470e-9
Identity = 53/144 (36.81%), Postives = 73/144 (50.69%), Query Frame = 1
Query:    4 PIHAAVGKEDILRLLLSNDSADKDELDHEGNSPLFLAVREGHVPSVKFLLTAGADSGLRAIAALARHGAVLNDALQHATIHSKLKVVVALLEAGADPNEANFEGCTPMLTAAESWPSEEVLRALLRHGAQIDVTDNFGRTPLHI 435
            P+H A GK   +  LL +  A+ + L+H G + L LA   G    +K LL   AD  L             + AL  AT+   LK V  LLEAGAD +    +  TP++ AA    S ++L+ L+  GA  +VTD +GRTPL I
Sbjct:   56 PLHLATGKGVEMVDLLLSKGANPNSLNH-GGTALHLAAIHGQDDIMKVLLDHHADHKLAL-------SGTDHTALVLATVACSLKCVKLLLEAGADVDGIGKD--TPLIIAAIDG-STDILKCLVLAGADANVTDTYGRTPLEI 188          
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Match: A0A4S1FGR6_9HYPH (C-type cytochrome n=12 Tax=Mesorhizobium TaxID=68287 RepID=A0A4S1FGR6_9HYPH)

HSP 1 Score: 61.2 bits (147), Expect = 2.700e-8
Identity = 45/147 (30.61%), Postives = 73/147 (49.66%), Query Frame = 1
Query:    1 APIHAAVGKEDILRLLLSNDS-ADKDELDHEGNSPLFLAVREGHVPSVKFLLTAGADSGLRAIAALARHGAVLNDALQHATIHSKLKVVVALLEAGADPNEANFEGCTPMLTAAESWPSEEVLRALLRHGAQIDVTDNFGRTPLHIA 438
            A IH A  K D+  +  + D+ +D DE D +  +PL+LAV+ GH+ + K LL  GAD              +L  AL  A    ++ ++  LL+ GA+PN          +  A +    + + AL+  GA ++V    G+TP+H+A
Sbjct:   22 AAIHDAATKGDVAGITAALDAGSDVDESDGKA-TPLYLAVKGGHLAAAKLLLERGADVNAAPT--------LLGPALMPALAKRRIDLIKLLLDGGANPNSKRSRESA--IHIAVNLDCLDCVEALVEAGADVNVKTKDGKTPIHLA 157          
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Match: A0A067BPM1_SAPPC (TKL protein kinase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BPM1_SAPPC)

HSP 1 Score: 60.5 bits (145), Expect = 7.650e-8
Identity = 57/174 (32.76%), Postives = 79/174 (45.40%), Query Frame = 1
Query:    4 PIH--AAVGKEDILRLLLSN-DSADKDELDHEGNSPLFLAVREGHVPSVKFLLTAGADSGLRAIAALARHGAVLNDALQHATIHSKLKVVVALLEAGADPNEANFEGCTPMLTAAESWPSEEVLRAL--------------------------LRHGAQIDVTDNFGRTPLHIA 438
            P+H  AA G+  I+  LL N D +  D ++HEG+SPL +AV++GHV  V  LL A A   LR   +    G  L   L  A     LKV+ AL+E   +         TP+  A +   +++VL+AL                          L  G  I+ TD  GRT LH+A
Sbjct:  435 PLHLAAACGQVTIVDALLKNVDKSGIDAINHEGDSPLVIAVKKGHVDVVSRLLQAKAS--LRCTTST---GWTL---LHEAAASGNLKVIQALVETPLNIVAKTTASETPLKIAIDKQHADDVLQALRDAEAAANRRFLDAVSSGDVELVDACLNKGVDINTTDEKGRTALHVA 600          
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Match: UPI001E27746A (ankyrin repeat domain-containing protein 12-like n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E27746A)

HSP 1 Score: 60.1 bits (144), Expect = 9.640e-8
Identity = 50/146 (34.25%), Postives = 70/146 (47.95%), Query Frame = 1
Query:    7 IHAAVG--KEDILRLLLSNDSADKDELDHEGNSPLFLAVREGHVPSVKFLLTAGADSGLRAIAALARHGAVLNDAL-QHATIHSKLKVVVALLEAGADPNEANFEGCTPMLTAAESWPSE-EVLRALLRHGAQIDVTDNFGRTPLH 432
            +H AV   + DI R LL+N  AD +  +  G +PLF AV    +     LL  GA    R          VL+D   Q   I+ ++     LL+ G DPN   +   TP+   A+  P E E  + L+R GA +++ D FG TPLH
Sbjct:  166 LHVAVTMPRLDITRYLLTN-RADVEAKNSYGKTPLFCAVEYNRIEQAILLLQYGASMRERD----KNDNTVLHDLCSQRGKINYEM--FEFLLDIGCDPNSFGYNRLTPLGILAKCNPDEIECAKLLIRRGANVNLQDKFGNTPLH 304          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1627.4284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I1I9S2_BRADI6.030e-1336.84Uncharacterized protein n=4 Tax=Brachypodium dista... [more]
A0A183TWN7_TOXCA5.530e-1232.70Asparaginase n=1 Tax=Toxocara canis TaxID=6265 Rep... [more]
A0A0B2VM50_TOXCA4.420e-1131.52Asparaginase n=1 Tax=Toxocara canis TaxID=6265 Rep... [more]
D3B406_POLPP9.790e-1135.16Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A2P8Z3U4_BLAGE4.160e-1036.64NACHT domain-containing protein (Fragment) n=1 Tax... [more]
A0A0Q7W9G2_9HYPH4.030e-933.78Cytochrome C n=2 Tax=Mesorhizobium sp. Root552 Tax... [more]
UPI001F5DC8A49.470e-936.8126S proteasome non-ATPase regulatory subunit 10-li... [more]
A0A4S1FGR6_9HYPH2.700e-830.61C-type cytochrome n=12 Tax=Mesorhizobium TaxID=682... [more]
A0A067BPM1_SAPPC7.650e-832.76TKL protein kinase n=1 Tax=Saprolegnia parasitica ... [more]
UPI001E27746A9.640e-834.25ankyrin repeat domain-containing protein 12-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1627contigL-elsbetiae_contig1627:10368..11102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog2880.D7G6X8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.7258792-CDS-L-elsbetiae_contig1627:10367..106251622815671.7258792-CDS-L-elsbetiae_contig1627:10367..10625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1627 10368..10625 -
1691683028.2783027-CDS-L-elsbetiae_contig1627:10367..106251691683028.2783027-CDS-L-elsbetiae_contig1627:10367..10625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1627 10368..10625 -
1622815671.7378778-CDS-L-elsbetiae_contig1627:10922..111021622815671.7378778-CDS-L-elsbetiae_contig1627:10922..11102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1627 10923..11102 -
1691683028.2897236-CDS-L-elsbetiae_contig1627:10922..111021691683028.2897236-CDS-L-elsbetiae_contig1627:10922..11102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1627 10923..11102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1627.4284.1prot_L-elsbetiae_contig1627.4284.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1627 10368..11102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1627.4284.1

>prot_L-elsbetiae_contig1627.4284.1 ID=prot_L-elsbetiae_contig1627.4284.1|Name=mRNA_L-elsbetiae_contig1627.4284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
APIHAAVGKEDILRLLLSNDSADKDELDHEGNSPLFLAVREGHVPSVKFL
LTAGADSGLRAIAALARHGAVLNDALQHATIHSKLKVVVALLEAGADPNE
ANFEGCTPMLTAAESWPSEEVLRALLRHGAQIDVTDNFGRTPLHIA
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mRNA from alignment at L-elsbetiae_contig1627:10368..11102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1627.4284.1 ID=mRNA_L-elsbetiae_contig1627.4284.1|Name=mRNA_L-elsbetiae_contig1627.4284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=735bp|location=Sequence derived from alignment at L-elsbetiae_contig1627:10368..11102- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCTATTCACGCCGCTGTCGGAAAAGAAGACATCTTGCGCCTGCTGTT GTCGAATGATTCTGCGGACAAAGACGAGCTCGATCACGAAGGCAACAGCC CCCTCTTCCTGGCGGTGCGTGAAGGCCACGTCCCTTCAGTTAAATTCCTT CTGACAGCTGGTGCGGATTCCGGCCTTCGCGTTGAAGCAGACCTAGATTA CTTGTACGACGATGCTGAGGATACCGACGGTTGGGCTGCTCTCGATCTCG CCGCCTCAGCAGGCCGTGCTGACCTGTGCAAACTGCTTGTTGAGGCGGGA GCGAATGTGAACGCCACAAGCAAGCGCTGTTCCCGCACGCCGCTGCATGC GGCAGCCGGCAGCAACCAGGTGGGCGCAATTGACACCCTCATCAAGCTCG GGGCTAATATCGCGGGAGATATCGCCGCCAGCTTCGAGACACCTGTTGAC ATCGCCGGGAAAACAGGGTCTCTGGAGGCTATTGCGGCCCTCGCGCGTCA CGGTGCCGTGCTGAACGACGCCTTGCAGCATGCAACCATACATTCTAAGC TGAAAGTGGTAGTCGCTCTACTCGAAGCGGGAGCTGATCCGAACGAGGCT AATTTTGAAGGGTGCACTCCAATGCTCACGGCAGCTGAATCGTGGCCCAG CGAAGAAGTTTTGAGGGCTCTTCTCCGGCACGGGGCACAGATAGACGTGA CAGACAACTTTGGCCGAACGCCTCTGCACATCGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1627:10368..11102-

>mRNA_L-elsbetiae_contig1627.4284.1 ID=mRNA_L-elsbetiae_contig1627.4284.1|Name=mRNA_L-elsbetiae_contig1627.4284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig1627:10368..11102- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCTATTCACGCCGCTGTCGGAAAAGAAGACATCTTGCGCCTGCTGTT
GTCGAATGATTCTGCGGACAAAGACGAGCTCGATCACGAAGGCAACAGCC
CCCTCTTCCTGGCGGTGCGTGAAGGCCACGTCCCTTCAGTTAAATTCCTT
CTGACAGCTGGTGCGGATTCCGGCCTTCGCGCGCCTATTCACGCCGCTGT
CGGAAAAGAAGACATCTTGCGCCTGCTGTTGTCGAATGATTCTGCGGACA
AAGACGAGCTCGATCACGAAGGCAACAGCCCCCTCTTCCTGGCGGTGCGT
GAAGGCCACGTCCCTTCAGTTAAATTCCTTCTGACAGCTGGTGCGGATTC
CGGCCTTCGCGCTATTGCGGCCCTCGCGCGTCACGGTGCCGTGCTGAACG
ACGCCTTGCAGCATGCAACCATACATTCTAAGCTGAAAGTGGTAGTCGCT
CTACTCGAAGCGGGAGCTGATCCGAACGAGGCTAATTTTGAAGGGTGCAC
TCCAATGCTCACGGCAGCTGAATCGTGGCCCAGCGAAGAAGTTTTGAGGG
CTCTTCTCCGGCACGGGGCACAGATAGACGTGACAGACAACTTTGGCCGA
ACGCCTCTGCACATCGCAGCTATTGCGGCCCTCGCGCGTCACGGTGCCGT
GCTGAACGACGCCTTGCAGCATGCAACCATACATTCTAAGCTGAAAGTGG
TAGTCGCTCTACTCGAAGCGGGAGCTGATCCGAACGAGGCTAATTTTGAA
GGGTGCACTCCAATGCTCACGGCAGCTGAATCGTGGCCCAGCGAAGAAGT
TTTGAGGGCTCTTCTCCGGCACGGGGCACAGATAGACGTGACAGACAACT
TTGGCCGAACGCCTCTGCACATCGCA
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