mRNA_L-elsbetiae_contig10428.428.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10428.428.1
Unique NamemRNA_L-elsbetiae_contig10428.428.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Match: A0A836CAF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.790e-28
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:   25 SAIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGMMVLFVGTAVYNGSLK 210
            SAIWHAILDNFRPVSVW TDL I+YI T GAFGEAWT+YSWLQ  GM+VLFVGTAVYNGSL+
Sbjct:  288 SAIWHAILDNFRPVSVWGTDLAIFYIFTAGAFGEAWTRYSWLQAVGMLVLFVGTAVYNGSLR 349
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BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Match: K8YYA0_NANGC (Drug metabolite transporter superfamily n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YYA0_NANGC)

HSP 1 Score: 109 bits (272), Expect = 7.480e-27
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:   19 FSSAIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGMMVLFVGTAVYNGSL 207
            F S++WHAILDNFRP+SVW TDL+IYY+ T G FGEAWT YSWLQF GM++LF GTAVYNGS+
Sbjct:  262 FLSSVWHAILDNFRPISVWGTDLLIYYVFTYGRFGEAWTVYSWLQFGGMLLLFFGTAVYNGSV 324
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BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Match: W7UAT2_9STRA (Drug metabolite transporter superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAT2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.990e-26
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:   19 FSSAIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGMMVLFVGTAVYNGSL 207
            F S++WHAILDNFRP+SVW TDL+IYY+ T G FGEAWT YSWLQF GM++LF GTAVYNGS+
Sbjct:  237 FLSSVWHAILDNFRPISVWGTDLLIYYVFTYGRFGEAWTVYSWLQFGGMLLLFFGTAVYNGSV 299
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BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Match: A0A8K1C3U3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3U3_PYTOL)

HSP 1 Score: 102 bits (254), Expect = 4.420e-24
Identity = 42/62 (67.74%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:   25 SAIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGMMVLFVGTAVYNGSLK 210
            ++IWHAILDNFRP++VW TDL+++Y+ T GAFGEAWT +SWLQ +GM++L  GTAVYNG+LK
Sbjct:  284 NSIWHAILDNFRPITVWGTDLLLFYVFTKGAFGEAWTIWSWLQLAGMVLLLAGTAVYNGTLK 345
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BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Match: A0A7R9Z4U8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z4U8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.220e-23
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   25 SAIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGMMVLFVGTAVYN----GSLK 210
            S++WHAILDNFRPV+VW  D+ IYY+IT GA+GE WTK+S+LQ  GM+VL  GTAVYN    GS+K
Sbjct:   19 SSVWHAILDNFRPVTVWGVDMFIYYVITSGAYGEPWTKWSYLQLFGMVVLLFGTAVYNAPNAGSIK 84
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BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Match: D8LSH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH0_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.240e-23
Identity = 43/48 (89.58%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   25 SAIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGMM 168
            SAIWHAILDNFRPVSVWSTDL+IYY+IT+G+FGEAWT+YSWLQFSGMM
Sbjct:  288 SAIWHAILDNFRPVSVWSTDLVIYYMITNGSFGEAWTQYSWLQFSGMM 335
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BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Match: A0A067CV30_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CV30_SAPPC)

HSP 1 Score: 99.4 bits (246), Expect = 1.070e-22
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   28 AIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGMMVLFVGTAVYNGSLK 210
            +IWHAILDNFRP++VW TDL+++Y+ T G FGEAWT +SWL+  GM+ L VGTAVYNGS++
Sbjct:  607 SIWHAILDNFRPITVWGTDLLLFYVFTPGTFGEAWTIWSWLELGGMLTLLVGTAVYNGSIQ 667
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BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Match: T0Q499_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q499_SAPDV)

HSP 1 Score: 98.6 bits (244), Expect = 1.270e-22
Identity = 39/61 (63.93%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:   28 AIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGMMVLFVGTAVYNGSLK 210
            +IWHAILDNFRP++VW TDL+++Y+ T G FGEAWT +SWL+  GM++L +GTAVYNGS++
Sbjct:  295 SIWHAILDNFRPITVWGTDLLLFYVFTPGTFGEAWTIWSWLELGGMLMLLLGTAVYNGSIQ 355
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BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Match: K3WIZ6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIZ6_GLOUD)

HSP 1 Score: 97.4 bits (241), Expect = 3.140e-22
Identity = 40/62 (64.52%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:   25 SAIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGMMVLFVGTAVYNGSLK 210
            ++IWHAILDNFRP++VW TDL+++Y+ T  +FGEAWT +SWLQ +GM  L +GTAVYNG+LK
Sbjct:  290 NSIWHAILDNFRPITVWGTDLLLFYVFTHESFGEAWTIWSWLQLAGMATLLLGTAVYNGTLK 351
[Close]
BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Match: D0RMJ6_PHYIT (Drug/Metabolite Transporter (DMT) Superfamily n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMJ6_PHYIT)

HSP 1 Score: 95.9 bits (237), Expect = 5.340e-22
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   25 SAIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGMMVLFVGTAVYNGSLK 210
            ++IWHAILDNFRP++VW+TDL+++Y  T G FGE WT +SWLQ  GM+ L  GTAVYNG+L+
Sbjct:  201 NSIWHAILDNFRPITVWATDLLLFYFFTQGEFGERWTIWSWLQLVGMLTLLAGTAVYNGTLR 262
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10428.428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAF8_9STRA4.790e-2883.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YYA0_NANGC7.480e-2774.60Drug metabolite transporter superfamily n=2 Tax=Mo... [more]
W7UAT2_9STRA1.990e-2674.60Drug metabolite transporter superfamily n=1 Tax=Na... [more]
A0A8K1C3U3_PYTOL4.420e-2467.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7R9Z4U8_9STRA1.220e-2365.15Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
D8LSH0_ECTSI4.240e-2389.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067CV30_SAPPC1.070e-2265.57Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0Q499_SAPDV1.270e-2263.93Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
K3WIZ6_GLOUD3.140e-2264.52Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0RMJ6_PHYIT5.340e-2262.90Drug/Metabolite Transporter (DMT) Superfamily n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10428contigL-elsbetiae_contig10428:5413..6583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.3e-19
Seed eggNOG ortholog42099.EPrPV00000019534
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Drug Metabolite Transporter (DMT) Superfamily. Source PGD
EggNOG OGs1MGGD@121069,COG0697@1,KOG3912@2759
COG Functional cat.EG
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons2
Model size210
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10428.428.1prot_L-elsbetiae_contig10428.428.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10428 5413..6568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.8220408-CDS-L-elsbetiae_contig10428:5412..54541622815267.8220408-CDS-L-elsbetiae_contig10428:5412..5454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10428 5413..5454 -
1691682806.6822293-CDS-L-elsbetiae_contig10428:5412..54541691682806.6822293-CDS-L-elsbetiae_contig10428:5412..5454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10428 5413..5454 -
1622815267.8712327-CDS-L-elsbetiae_contig10428:6415..65681622815267.8712327-CDS-L-elsbetiae_contig10428:6415..6568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10428 6416..6568 -
1691682806.6981235-CDS-L-elsbetiae_contig10428:6415..65681691682806.6981235-CDS-L-elsbetiae_contig10428:6415..6568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10428 6416..6568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.8823273-UTR-L-elsbetiae_contig10428:6568..65831622815267.8823273-UTR-L-elsbetiae_contig10428:6568..6583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10428 6569..6583 -
1691682806.712262-UTR-L-elsbetiae_contig10428:6568..65831691682806.712262-UTR-L-elsbetiae_contig10428:6568..6583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10428 6569..6583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10428.428.1

>prot_L-elsbetiae_contig10428.428.1 ID=prot_L-elsbetiae_contig10428.428.1|Name=mRNA_L-elsbetiae_contig10428.428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MFSSAIWHAILDNFRPVSVWSTDLIIYYIITDGAFGEAWTKYSWLQFSGM
MVLFVGTAVYNGSLK
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mRNA from alignment at L-elsbetiae_contig10428:5413..6583-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10428.428.1 ID=mRNA_L-elsbetiae_contig10428.428.1|Name=mRNA_L-elsbetiae_contig10428.428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1171bp|location=Sequence derived from alignment at L-elsbetiae_contig10428:5413..6583- (Laminarionema elsbetiae ELsaHSoW15)
TTCCCTTTTTATATAATGTTCTCCAGCGCCATCTGGCACGCCATCCTGGA
CAACTTCCGCCCTGTCAGCGTGTGGAGCACGGACCTGATAATCTACTACA
TCATCACCGACGGCGCATTCGGCGAGGCGTGGACCAAGTATTCGTGGCTG
CAGTTCTCGGGCATGATGGTGAGAGGAGAGAGGAGAGAGAGCGGTCGGTG
CAACGGGGCGAGCCTTTTACGGCGGCACGCTGGTTTTGATCGGTTTCTGC
TGTTGCTGTTGACGATGATGATTATGATAATGATGCTGCTGTTGGTGATG
ATGATGTTGTTGTTGACGATGATGATGATGATGATGTTGCTGTTGGTGAT
GATGATGATGTTGCTGCTGCTGTTGGCGGTGGAGGTGCTGATTGGCTGTT
GTTGTTGTTGATGATGGTGGTGGTGTACTTCGTTATATACTCTGCTTATT
GGTGAGATATACAACCGTCGCCGGGTGATAAGTAGATCGGGGTGGGTTGG
GTGGTGGTCGTCACGTCAGGGTGGCACGAGGCAAGGCGGGGGCGTTCCAT
CGGAAATTACTGCTTGTCCTGCACCCTTCAACAGCGCAAAAAGAACCCAA
CGCGCGTCGACTGATCGCGACCCCCCGCCCCGGCACGACTCAGCAGTGCA
CACATCCGTGCCTCCTATACACGCCTGGCGTTTTGTCGGGCAGGCCGCAT
CCAGCATCCAGTCAACGCAATCGAGAGTTGCGAATCCGTCCCACTACAGC
CCCCAGTCGCCCCTTGTGCGCATGCATGCACATGACACACCAAGCCCATG
TAGTGAGTACATCTTCATACCCGCCCCAATCGATCCATACCCCCCGACGT
CCAAGTTTGGTCGTCATGGTGCTTGCTTGGCTTGCTTCGCAAGTCCATTT
TCCGCTCGCACACACGCGACCTGTACATACACACCGCCCCAACATCCTAC
CCAAACCCTCGCAAAAGCAAACCTTTTTCTGCTCGCTTCGCCAAATATTA
CGTCTGTGTATGGAATACCGTTTGAACCCCATATCGAGTCTTTGCTCTAG
TCTGGGTTTTATAGGTTCCATCTTTGATTCTTTGTTTTATTTTAAAAGCA
ACCCCCCACGTGCGCGCGCGCTCGTCAAGGTCCTCTTCGTCGGAACCGCC
GTGTACAACGGCTCCCTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10428:5413..6583-

>mRNA_L-elsbetiae_contig10428.428.1 ID=mRNA_L-elsbetiae_contig10428.428.1|Name=mRNA_L-elsbetiae_contig10428.428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig10428:5413..6583- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTCCAGCGCCATCTGGCACGCCATCCTGGACAACTTCCGCCCTGT
CAGCGTGTGGAGCACGGACCTGATAATCTACTACATCATCACCGACGGCG
CATTCGGCGAGGCGTGGACCAAGTATTCGTGGCTGCAGTTCTCGGGCATG
ATGATGTTCTCCAGCGCCATCTGGCACGCCATCCTGGACAACTTCCGCCC
TGTCAGCGTGTGGAGCACGGACCTGATAATCTACTACATCATCACCGACG
GCGCATTCGGCGAGGCGTGGACCAAGTATTCGTGGCTGCAGTTCTCGGGC
ATGATGGTCCTCTTCGTCGGAACCGCCGTGTACAACGGCTCCCTCAAGGT
CCTCTTCGTCGGAACCGCCGTGTACAACGGCTCCCTCAAG
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