mRNA_L-elsbetiae_contig16267.4280.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16267.4280.1
Unique NamemRNA_L-elsbetiae_contig16267.4280.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16267.4280.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.930e-11
Identity = 61/148 (41.22%), Postives = 71/148 (47.97%), Query Frame = 1 
Query:    1 WGLDLLVLAVAGTPGAAAE------GERGGEEGAFSVHAVRVSSEEASWVGSSVGVKLLSSHRVGAIPSANSNGAALAAAW--------------PFPH------RRAVLVADKERAFSAVGQYGANGGYSGGSGSWAGDGVSAHIFW 366
            WGL+LLVLA AG                 G+    SVHAVRVSS EASWVGSSV V+++SSH V    SA +   A+AAA               P P       RRA LVAD E+AFS        GG         G G+ AH+FW
Sbjct:  205 WGLELLVLAAAGAXXXXXRYXXXXXXXXXGDGRELSVHAVRVSSGEASWVGSSVSVQVISSHHV-TTTSATATAEAVAAARRGRQPAFPAAAPNPPAPASLGPGCRRATLVADNEQAFSTGDGTRVGGG---------GGGIVAHVFW 342
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BLAST of mRNA_L-elsbetiae_contig16267.4280.1 vs. uniprot
Match: D8LMM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM2_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 9.610e-6
Identity = 48/119 (40.34%), Postives = 58/119 (48.74%), Query Frame = 1 
Query:   79 GAFSVHAVRVSSEEASWVGSSVGVKLLSSHRVG------------------AIPSANSNGAALAAAWPFPHRRAVLVADKERAFSAVGQYGANGGYSGGSGSWAGDG-----VSAHIFW 366
            G  SVHAVRVS  EASWVGSSV V+++SSH V                   A  +A SN +A A+  P   RRA LVAD E+AFS             G G+  G       + AH+FW
Sbjct:  284 GELSVHAVRVSCGEASWVGSSVSVQVISSHHVSTTXXXXXXXXXGRRGRQPAFRAAASNPSAPASLGPGC-RRATLVADNEQAFST------------GDGTRVGGXXXXXXIGAHVFW 389
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16267.4280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHH9_9PHAE9.930e-1141.22Nucleoporin_C domain-containing protein n=1 Tax=Ec... [more]
D8LMM2_ECTSI9.610e-640.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16267contigL-elsbetiae_contig16267:1402..2514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.4456213-CDS-L-elsbetiae_contig16267:1402..16151622815671.4456213-CDS-L-elsbetiae_contig16267:1402..1615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16267 1403..1615 -
1691683028.1168272-CDS-L-elsbetiae_contig16267:1402..16151691683028.1168272-CDS-L-elsbetiae_contig16267:1402..1615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16267 1403..1615 -
1622815671.458076-CDS-L-elsbetiae_contig16267:2361..25141622815671.458076-CDS-L-elsbetiae_contig16267:2361..2514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16267 2362..2514 -
1691683028.1310456-CDS-L-elsbetiae_contig16267:2361..25141691683028.1310456-CDS-L-elsbetiae_contig16267:2361..2514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16267 2362..2514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16267.4280.1prot_L-elsbetiae_contig16267.4280.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16267 1403..2514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16267.4280.1

>prot_L-elsbetiae_contig16267.4280.1 ID=prot_L-elsbetiae_contig16267.4280.1|Name=mRNA_L-elsbetiae_contig16267.4280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
WGLDLLVLAVAGTPGAAAEGERGGEEGAFSVHAVRVSSEEASWVGSSVGV
KLLSSHRVGAIPSANSNGAALAAAWPFPHRRAVLVADKERAFSAVGQYGA
NGGYSGGSGSWAGDGVSAHIFW
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mRNA from alignment at L-elsbetiae_contig16267:1402..2514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16267.4280.1 ID=mRNA_L-elsbetiae_contig16267.4280.1|Name=mRNA_L-elsbetiae_contig16267.4280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1113bp|location=Sequence derived from alignment at L-elsbetiae_contig16267:1402..2514- (Laminarionema elsbetiae ELsaHSoW15)
TGGGGCCTGGACCTGCTGGTGCTGGCTGTGGCGGGGACCCCGGGGGCGGC
TGCGGAGGGCGAGAGAGGAGGCGAGGAGGGCGCGTTTTCTGTCCACGCCG
TGAGGGTTTCTTCTGAGGAGGCGTCTTGGGTCGGGAGCTCGGTCGGCGTC
AAGGTCGGTCGGGGGGTTGTTTATTTGCTTGTTTGCTTGTTTGTTTGTTT
GTTTGTTTTGTCCTTAGCTGGCCCCCTCTAGGTGTATGCTGTTGTTGGTT
TTATTTTCTCTTTCTCTACATCTTGCTCTTTCTTTCTCGTTCTCGTTCTC
TTTTATATTTCTTTGTCTCTCTCTGTCCGTTTCTTTCTTTATTGCTTTCT
CTCTCTCTCCATATTTCCCCTCCGTCTTTACTCTCTGATGTATGCAAAAT
TAAAATTAGCGCCTTTTTTGTTTCTTTGCAGGTAGAAGAGTGGCGTGAGT
TTGGTTCTGATGCGAGTGGTGTTCCTTTTGATGTATCGTGCTATCTGTGT
GCAGGTTCGGACTACCTGTATCGTCTCCATACGTATGTCGCGGTTGTCGC
TTGCTGTAGTGCAGGGTGGTAGCTTTTTGTCCTGTCTGGGCTACGTAGAT
GCGGCACTTCTCAGTGATGCAATGCCCCCATCCTTTTGTCTGGCTGGAGG
AAAAGCGACGTATGCTGTAGGTGATGCCTTCCGTTCTGGCTTCATTTAGG
TATCGTTTTTTGTAACGCACAAGTCCAGTCTGACGACGGTGGCCCCGCAT
GATGTTGAGTACACCCCCCCCCATACCCCCCTCCTTTTCTCGCCGACTGT
CCTCGCCCGCCAACGGCGGCAACAACAACAACAACAACAACAACAACAAC
GACAACGACAACGACTACAACACAACCACAACGACATTCCACCATTCAGC
TTCTCTCCTCCCACCGAGTCGGCGCCATCCCCAGCGCCAACAGCAACGGG
GCGGCATTAGCAGCAGCGTGGCCGTTCCCGCACCGCCGCGCAGTCCTGGT
GGCCGACAAGGAACGGGCGTTTTCTGCCGTGGGGCAGTACGGCGCCAACG
GGGGCTATAGCGGCGGTAGCGGTAGCTGGGCGGGGGATGGTGTCTCCGCT
CACATCTTCTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16267:1402..2514-

>mRNA_L-elsbetiae_contig16267.4280.1 ID=mRNA_L-elsbetiae_contig16267.4280.1|Name=mRNA_L-elsbetiae_contig16267.4280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig16267:1402..2514- (Laminarionema elsbetiae ELsaHSoW15)
TGGGGCCTGGACCTGCTGGTGCTGGCTGTGGCGGGGACCCCGGGGGCGGC
TGCGGAGGGCGAGAGAGGAGGCGAGGAGGGCGCGTTTTCTGTCCACGCCG
TGAGGGTTTCTTCTGAGGAGGCGTCTTGGGTCGGGAGCTCGGTCGGCGTC
AAGTGGGGCCTGGACCTGCTGGTGCTGGCTGTGGCGGGGACCCCGGGGGC
GGCTGCGGAGGGCGAGAGAGGAGGCGAGGAGGGCGCGTTTTCTGTCCACG
CCGTGAGGGTTTCTTCTGAGGAGGCGTCTTGGGTCGGGAGCTCGGTCGGC
GTCAAGCTTCTCTCCTCCCACCGAGTCGGCGCCATCCCCAGCGCCAACAG
CAACGGGGCGGCATTAGCAGCAGCGTGGCCGTTCCCGCACCGCCGCGCAG
TCCTGGTGGCCGACAAGGAACGGGCGTTTTCTGCCGTGGGGCAGTACGGC
GCCAACGGGGGCTATAGCGGCGGTAGCGGTAGCTGGGCGGGGGATGGTGT
CTCCGCTCACATCTTCTGGCTTCTCTCCTCCCACCGAGTCGGCGCCATCC
CCAGCGCCAACAGCAACGGGGCGGCATTAGCAGCAGCGTGGCCGTTCCCG
CACCGCCGCGCAGTCCTGGTGGCCGACAAGGAACGGGCGTTTTCTGCCGT
GGGGCAGTACGGCGCCAACGGGGGCTATAGCGGCGGTAGCGGTAGCTGGG
CGGGGGATGGTGTCTCCGCTCACATCTTCTGG
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