prot_L-elsbetiae_contig16267.4280.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16267.4280.1
Unique Nameprot_L-elsbetiae_contig16267.4280.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length122
Homology
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BLAST of mRNA_L-elsbetiae_contig16267.4280.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.930e-11
Identity = 61/148 (41.22%), Postives = 71/148 (47.97%), Query Frame = 0 
Query:    1 WGLDLLVLAVAGTPGAAAE------GERGGEEGAFSVHAVRVSSEEASWVGSSVGVKLLSSHRVGAIPSANSNGAALAAAW--------------PFPH------RRAVLVADKERAFSAVGQYGANGGYSGGSGSWAGDGVSAHIFW 122
            WGL+LLVLA AG                 G+    SVHAVRVSS EASWVGSSV V+++SSH V    SA +   A+AAA               P P       RRA LVAD E+AFS        GG         G G+ AH+FW
Sbjct:  205 WGLELLVLAAAGAXXXXXRYXXXXXXXXXGDGRELSVHAVRVSSGEASWVGSSVSVQVISSHHV-TTTSATATAEAVAAARRGRQPAFPAAAPNPPAPASLGPGCRRATLVADNEQAFSTGDGTRVGGG---------GGGIVAHVFW 342
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BLAST of mRNA_L-elsbetiae_contig16267.4280.1 vs. uniprot
Match: D8LMM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM2_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 9.610e-6
Identity = 48/119 (40.34%), Postives = 58/119 (48.74%), Query Frame = 0 
Query:   27 GAFSVHAVRVSSEEASWVGSSVGVKLLSSHRVG------------------AIPSANSNGAALAAAWPFPHRRAVLVADKERAFSAVGQYGANGGYSGGSGSWAGDG-----VSAHIFW 122
            G  SVHAVRVS  EASWVGSSV V+++SSH V                   A  +A SN +A A+  P   RRA LVAD E+AFS             G G+  G       + AH+FW
Sbjct:  284 GELSVHAVRVSCGEASWVGSSVSVQVISSHHVSTTXXXXXXXXXGRRGRQPAFRAAASNPSAPASLGPGC-RRATLVADNEQAFST------------GDGTRVGGXXXXXXIGAHVFW 389
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16267.4280.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHH9_9PHAE9.930e-1141.22Nucleoporin_C domain-containing protein n=1 Tax=Ec... [more]
D8LMM2_ECTSI9.610e-640.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..122
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.632

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16267contigL-elsbetiae_contig16267:1403..2514 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16267.4280.1mRNA_L-elsbetiae_contig16267.4280.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16267 1402..2514 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16267.4280.1 ID=prot_L-elsbetiae_contig16267.4280.1|Name=mRNA_L-elsbetiae_contig16267.4280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
WGLDLLVLAVAGTPGAAAEGERGGEEGAFSVHAVRVSSEEASWVGSSVGV
KLLSSHRVGAIPSANSNGAALAAAWPFPHRRAVLVADKERAFSAVGQYGA
NGGYSGGSGSWAGDGVSAHIFW
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