mRNA_L-elsbetiae_contig1626.4277.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1626.4277.1
Unique NamemRNA_L-elsbetiae_contig1626.4277.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1626.4277.1 vs. uniprot
Match: A0A6H5KGP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP6_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.970e-38
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 IEDWAIRVLPVDADGSCFFSSITIALNESLHAWMHNKKIKKILKQHWHIFLDLGLESPDYFTPTFVRYITSVSIDQNDLVAYNGIATADN 270
            IEDWAIR+LPVDADGSCF+SSI IALNES+ +W  NKKIK +L+ HWH  L+LG+ESPD FTP FV YITS SIDQ+DL AYN IA+ADN
Sbjct:    2 IEDWAIRLLPVDADGSCFYSSIAIALNESMPSWGENKKIKGMLRNHWHRVLELGVESPDIFTPKFVSYITSTSIDQDDLEAYNSIASADN 91
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BLAST of mRNA_L-elsbetiae_contig1626.4277.1 vs. uniprot
Match: Q8QND2_ESV1K (EsV-1-150 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND2_ESV1K)

HSP 1 Score: 119 bits (299), Expect = 3.090e-31
Identity = 51/89 (57.30%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 IEDWAIRVLPVDADGSCFFSSITIALNESLHAWMHNKKIKKILKQHWHIFLDLGLESPDYFTPTFVRYITSVSIDQNDLVAYNGIATAD 267
            +++W +R++ V +DGSCFFSS+ IALN+S+ +W HN K+  +L+ HWH +L+LGLESPD FT  FVRYI+SVSI + DL+AYN +A AD
Sbjct:    1 MDEWFVRLVTVPSDGSCFFSSVAIALNDSVGSWRHNHKVTNMLRTHWHNYLELGLESPDNFTAKFVRYISSVSIGEEDLLAYNEVARAD 89
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BLAST of mRNA_L-elsbetiae_contig1626.4277.1 vs. uniprot
Match: A0A6H5JXI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXI0_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.960e-16
Identity = 36/47 (76.60%), Postives = 44/47 (93.62%), Query Frame = 2 
Query:  287 DSVSQLAEHILHSNCWVDTITFGAILKSLDCTVAVVVIDHDIKEPLC 427
            DSVSQLAEH+LH+NCW++T+TFGA LKSL C++AVVVIDH+IKE LC
Sbjct:  542 DSVSQLAEHVLHTNCWINTVTFGAFLKSLHCSIAVVVIDHEIKERLC 588
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BLAST of mRNA_L-elsbetiae_contig1626.4277.1 vs. uniprot
Match: D8LPH2_ECTSI (EsV-1-150 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH2_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.440e-13
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 2 
Query:  302 LAEHILHSNCWVDTITFGAILKSLDCTVAVVVIDHDIKEPLCLL 433
            LAEH+  SNCWVDT+TFGA LKSLDC+VAVVV+DH++K+PL +L
Sbjct:   59 LAEHVFLSNCWVDTVTFGAFLKSLDCSVAVVVLDHELKQPLNML 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1626.4277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KGP6_9PHAE1.970e-3873.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QND2_ESV1K3.090e-3157.30EsV-1-150 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JXI0_9PHAE5.960e-1676.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPH2_ECTSI1.440e-1372.73EsV-1-150 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1626contigL-elsbetiae_contig1626:17986..18418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-150
Ec32 orthologEc-06_005390.1
Exons1
Model size433
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1626.4277.1prot_L-elsbetiae_contig1626.4277.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1626 18085..18267 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.3125067-UTR-L-elsbetiae_contig1626:17985..180841622815671.3125067-UTR-L-elsbetiae_contig1626:17985..18084Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 17986..18084 +
1691683028.0196323-UTR-L-elsbetiae_contig1626:17985..180841691683028.0196323-UTR-L-elsbetiae_contig1626:17985..18084Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 17986..18084 +
1622815671.3342943-UTR-L-elsbetiae_contig1626:18267..184181622815671.3342943-UTR-L-elsbetiae_contig1626:18267..18418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 18268..18418 +
1691683028.046706-UTR-L-elsbetiae_contig1626:18267..184181691683028.046706-UTR-L-elsbetiae_contig1626:18267..18418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 18268..18418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.3246276-CDS-L-elsbetiae_contig1626:18084..182671622815671.3246276-CDS-L-elsbetiae_contig1626:18084..18267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 18085..18267 +
1691683028.030883-CDS-L-elsbetiae_contig1626:18084..182671691683028.030883-CDS-L-elsbetiae_contig1626:18084..18267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 18085..18267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1626.4277.1

>prot_L-elsbetiae_contig1626.4277.1 ID=prot_L-elsbetiae_contig1626.4277.1|Name=mRNA_L-elsbetiae_contig1626.4277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MHNKKIKKILKQHWHIFLDLGLESPDYFTPTFVRYITSVSIDQNDLVAYN
GIATADNVYE*
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mRNA from alignment at L-elsbetiae_contig1626:17986..18418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1626.4277.1 ID=mRNA_L-elsbetiae_contig1626.4277.1|Name=mRNA_L-elsbetiae_contig1626.4277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=433bp|location=Sequence derived from alignment at L-elsbetiae_contig1626:17986..18418+ (Laminarionema elsbetiae ELsaHSoW15)
ATAGAGGACTGGGCAATACGCGTGCTACCCGTGGACGCCGACGGCTCGTG
CTTCTTCTCGTCGATAACGATAGCCCTGAACGAGTCGCTCCATGCTTGGA
TGCACAACAAAAAGATTAAGAAAATACTGAAACAACACTGGCACATTTTT
TTAGACCTCGGCCTGGAGTCGCCGGACTACTTCACGCCAACGTTCGTGCG
GTACATCACCTCGGTCAGCATCGATCAAAACGATCTTGTGGCGTACAATG
GTATTGCCACAGCCGACAACGTCTACGAATAAAATGGATTCTGTATCTCA
ACTGGCGGAACATATCTTGCACAGCAACTGCTGGGTTGACACGATCACCT
TCGGCGCGATTCTCAAGTCGCTCGACTGCACCGTTGCTGTCGTGGTCATA
GACCATGACATCAAAGAACCGCTGTGCTTGTTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1626:17986..18418+

>mRNA_L-elsbetiae_contig1626.4277.1 ID=mRNA_L-elsbetiae_contig1626.4277.1|Name=mRNA_L-elsbetiae_contig1626.4277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig1626:17986..18418+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACAACAAAAAGATTAAGAAAATACTGAAACAACACTGGCACATTTT
TTTAGACCTCGGCCTGGAGTCGCCGGACTACTTCACGCCAACGTTCGTGC
GGTACATCACCTCGGTCAGCATCGATCAAAACGATCTTGTGGCGTACAAT
GGTATTGCCACAGCCGACAACGTCTACGAATAAATGCACAACAAAAAGAT
TAAGAAAATACTGAAACAACACTGGCACATTTTTTTAGACCTCGGCCTGG
AGTCGCCGGACTACTTCACGCCAACGTTCGTGCGGTACATCACCTCGGTC
AGCATCGATCAAAACGATCTTGTGGCGTACAATGGTATTGCCACAGCCGA
CAACGTCTACGAATAA
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