mRNA_L-elsbetiae_contig10427.427.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10427.427.1
Unique NamemRNA_L-elsbetiae_contig10427.427.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10427.427.1 vs. uniprot
Match: D7FKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD5_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.100e-53
Identity = 95/114 (83.33%), Postives = 103/114 (90.35%), Query Frame = 1 
Query:    4 KAKKLAEAWVQGKEGQDLWKQECKRLLLECRRRLEVVPRAEVESRTWQALVAYRSKTLARELGGQGTELSTAENHLVRAWEILESRHGRVHPDVGAACISLGNLAVIRRRQGEA 345
            KAKKLAE W+QGKEGQDLWKQECKRL+LECRRRLEVVPRAE+E RTWQALVAYRSK L RELGG+G EL TAE++LVR WEILESRHGR  PDVGAAC+SLG+LAVIRRR  EA
Sbjct:  728 KAKKLAETWIQGKEGQDLWKQECKRLVLECRRRLEVVPRAEIEERTWQALVAYRSKILTRELGGKGKELDTAEDYLVRVWEILESRHGRNDPDVGAACVSLGSLAVIRRRLNEA 841
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BLAST of mRNA_L-elsbetiae_contig10427.427.1 vs. uniprot
Match: A0A6H5J7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A2_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.310e-32
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  121 AEVESRTWQALVAYRSKTLARELGGQGTELSTAENHLVRAWEILESRHGRVHPDVGAACISLGNLAVIRRRQGEA 345
            +++E RTWQALVAYRSK L RELGG+G EL TAE++LVRAWEILESR GR  PDVGAACISLGNLAVIRRR  EA
Sbjct:   19 SQIEERTWQALVAYRSKVLTRELGGKGKELDTAEDYLVRAWEILESRQGRNDPDVGAACISLGNLAVIRRRLNEA 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10427.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKD5_ECTSI1.100e-5383.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7A2_9PHAE6.310e-3278.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10427contigL-elsbetiae_contig10427:989..6005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_005800.1
Exons7
Model size648
Cds size522
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10427.427.1prot_L-elsbetiae_contig10427.427.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10427 1967..6005 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.6986256-UTR-L-elsbetiae_contig10427:988..10511622815267.6986256-UTR-L-elsbetiae_contig10427:988..1051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10427 989..1051 -
1691682806.6023815-UTR-L-elsbetiae_contig10427:988..10511691682806.6023815-UTR-L-elsbetiae_contig10427:988..1051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10427 989..1051 -
1622815267.7099566-UTR-L-elsbetiae_contig10427:1905..19661622815267.7099566-UTR-L-elsbetiae_contig10427:1905..1966Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10427 1906..1966 -
1691682806.611783-UTR-L-elsbetiae_contig10427:1905..19661691682806.611783-UTR-L-elsbetiae_contig10427:1905..1966Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10427 1906..1966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.7197857-CDS-L-elsbetiae_contig10427:1966..20281622815267.7197857-CDS-L-elsbetiae_contig10427:1966..2028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 1967..2028 -
1691682806.619912-CDS-L-elsbetiae_contig10427:1966..20281691682806.619912-CDS-L-elsbetiae_contig10427:1966..2028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 1967..2028 -
1622815267.72984-CDS-L-elsbetiae_contig10427:2677..27931622815267.72984-CDS-L-elsbetiae_contig10427:2677..2793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 2678..2793 -
1691682806.6280832-CDS-L-elsbetiae_contig10427:2677..27931691682806.6280832-CDS-L-elsbetiae_contig10427:2677..2793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 2678..2793 -
1622815267.7461271-CDS-L-elsbetiae_contig10427:3855..39631622815267.7461271-CDS-L-elsbetiae_contig10427:3855..3963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 3856..3963 -
1691682806.636892-CDS-L-elsbetiae_contig10427:3855..39631691682806.636892-CDS-L-elsbetiae_contig10427:3855..3963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 3856..3963 -
1622815267.759791-CDS-L-elsbetiae_contig10427:4477..45871622815267.759791-CDS-L-elsbetiae_contig10427:4477..4587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 4478..4587 -
1691682806.6478844-CDS-L-elsbetiae_contig10427:4477..45871691682806.6478844-CDS-L-elsbetiae_contig10427:4477..4587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 4478..4587 -
1622815267.771637-CDS-L-elsbetiae_contig10427:5485..55451622815267.771637-CDS-L-elsbetiae_contig10427:5485..5545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 5486..5545 -
1691682806.658876-CDS-L-elsbetiae_contig10427:5485..55451691682806.658876-CDS-L-elsbetiae_contig10427:5485..5545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 5486..5545 -
1622815267.7811863-CDS-L-elsbetiae_contig10427:5939..60051622815267.7811863-CDS-L-elsbetiae_contig10427:5939..6005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 5940..6005 -
1691682806.6705122-CDS-L-elsbetiae_contig10427:5939..60051691682806.6705122-CDS-L-elsbetiae_contig10427:5939..6005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10427 5940..6005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10427.427.1

>prot_L-elsbetiae_contig10427.427.1 ID=prot_L-elsbetiae_contig10427.427.1|Name=mRNA_L-elsbetiae_contig10427.427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
AKAKKLAEAWVQGKEGQDLWKQECKRLLLECRRRLEVVPRAEVESRTWQA
LVAYRSKTLARELGGQGTELSTAENHLVRAWEILESRHGRVHPDVGAACI
SLGNLAVIRRRQGEATRDGQHCGGPREPVDKTGSCWGGRDGLERATADSV
RESGPERGNGAAGKRGQVLLRSS*
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mRNA from alignment at L-elsbetiae_contig10427:989..6005-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10427.427.1 ID=mRNA_L-elsbetiae_contig10427.427.1|Name=mRNA_L-elsbetiae_contig10427.427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5017bp|location=Sequence derived from alignment at L-elsbetiae_contig10427:989..6005- (Laminarionema elsbetiae ELsaHSoW15)
GCCAAAGCCAAGAAGTTAGCGGAAGCCTGGGTTCAAGGCAAGGAAGGACA
GGACCTATGGAAGCAGGTAAACCTTCGGGCATGGAGGAGGGAAAACTGAC
GGCGGAACCGTCTAGGAACAACTCGATCTCACAGCTAGCTGTGCTCACGC
CACGGCTGCTAAATAAAAAGATGCTCTCGAGAAGATGTAAACGAAAACTT
TACTCTGGCGTTCCCAAGACTAAGTAACGAAATCCCTCGGTCGAAAGACA
AGCGACGACAGGCTGTCCGCGAGTTCATTCCGCTAGTAGTTTTGACACAC
TGAGTTTCGAGAGAACATTGTTGAAGGGAGTATCCAACCGCCGCGCCTGA
AAACCAACTCCCTGGCGGAGAAGGAGGGGGGGCAGGCGATGAATATCCCG
AATGTCCGTTGTGCCCGTCGTTTTGCTGTAAATTTATCTTCAATACCGAA
TAAACAACAGGAGTGCAAGCGGCTCCTGCTGGAGTGCCGGCGCAGGCTAG
AGGTCGTACCCCGCGCCGAGGTGAGCAGAACGAGGCACGAAGGTCCAGCG
CGACGGAGGAGCAGCTGCATTTTTTTGTTTTCTCCCATTAGATATTTGCA
TATTCGTCGTCTGCCCCACTGGCCCTACGACTGGCTAGACGACCCGACCG
AGGTCACACAGGAGGGCCTTTCCTGCGCTGCCTGCCTGTGACGTTTTTAT
GGCGAGCAGGGTTCAGCACTCCCCACCCTCGTCAACAATGAAGTCGCATG
TCAGCTGATGATGCGTACACTGCGTGCCGGGGCTTTCCGGGGGGGCTCGG
CGTGGTGCTTCTCCCGCCGTGCGGTGCCCGCCATCGTTTTGAAATAGAAT
GAAAAATAATAGAATGAAAAATGTGGTACATATAACTACATAAGTAGCTT
TTTTGTTGTTTCGAGGAGACCGGCGCACATTTCCTGTTGGGGAAATTTGC
CGAGATGTGGAGGTCTCCGCCCGCCTCTCATAACGTCCCGTTCCGTGCCA
ACGTCTCCGTATGTTTCCTGGCAGCGTTTGCTGCTTGCTACCTGTCGCCC
AACACCCAACCCGCCCAATTAACCTCGCAACTTTGAAGGAGAAACAGTCA
ATCAAAAATGGAACCTGACCCACATTGAGACGGGACTCCGTGAGATTCAG
TCGGTATTCCATATAAATAGTGGCGTAATATTGGGCCGGCCGAGTACAAA
ACGCCTTAAGAATAGGAAGAATTCGCCATCTCCCTTGCATATCTGCCAGG
TCAAACAGCTTTGTAAAAACAAAATGACCCCGTCTCCTTTTGGTGGAACG
GCTCTTGTTGTTATTGATGATGATGGTAATGATGATAATGATGATGATGG
TGATGATGGAGATGATGATGATGATGATGATGATGATGATGGCGATGGCA
TTTCGCCTGTTGGTCCAGGTTGAGTCACGCACATGGCAGGCGCTGGTGGC
GTATCGATCAAAGACCCTCGCGCGCGAGCTGGGCGGGCAGGGGACCGAGC
TCAGCACGGCCGAAAACCACCTCGTGCGGTGAGTAATGTTTTTTTGTTCA
TGTACATACATACGATGATCATGCGTGAGTTGGTTAGCACCCCCCCTGGA
CCGACGTTCAAATCTCAAGAGTAATATACTCCACAGCGAGAAGAGTGTCA
GTGCCGAAAATGGTGGCGTTGGAAAAGATCTCGTCGATATTGTAGCTGTC
CGAAAACGTGTCGTTTGAGGTGTTGGCACCGTCTTCGTTACGAAGTAGAA
GTCGAACGTTGAAAGCCGGCCCAGGGGGGGGGGGTGCGAATGCACGGCAT
GATTACGGTACACACCGACGTATTGTTTACATTCATATGTACATTCATAA
AATCATGCAGTTCAATCGTACAAAACCAACACATTCCATAATATTCTAGA
AATGTAAATAAAAATCTCATCGGAGGCTCGAGGAGATCGTTCGAACCCCC
CCCCCCTGATGAAGCCAGCCTCCGAGGGTGATTGAAAAAAAGACTGCGCG
TCACTTGTGCGCCTGGAACTCGGCCGGCATGGCCTTTCACAGGGCCTGGG
AAATTCTCGAAAGCCGGCACGGGAGAGTCCACCCCGACGTCGGCGCGGCC
TGCATATCTCTGGGAAACCTTGCCGTCATTCGTAGAAGGCAAGGCGAGGC
GGTCGACTGGTTCCGTAGAGCCCTAGGGACGTTCGAGGTACGGGGAGTAT
GTACCGTATACGACACAATATTACACACCCCCTGGACCAATTTTTAAAGC
TTGGTTAGTCCGCAACGGGTATGATCACGATACCAAACGACACGCTTTCG
GACAGCTAGCTCTTGGGGAGATCTTTCCAGCGCCGCCCTTTTCGGGACTG
AAGCTGTTCTCGCTGTCGAGTACTCGAGCTTTGAAAATCGGCCCAGGGGG
TGTGTTATCTTGTGTCGTATACGGTACGCCTGTACTGTCTGCTTCGATCA
AACACAGCCGGTACTAACAGTAGCCCTCCTTGCAGCTTGGGCCTCGCCGT
GACCTTTCCTCCTTACTACCCGCCCGTCTCACTTCATGTAGCTCTGGTTG
CGTTCTTTGAAGGCTTCGGTTCTACATACCCCGCCGGTAGGATGCCGTAG
GGTTTCTCGGCGCGTATGTACACACATACCCGTCCGGCTCACAAGTGCGG
CGGATCTCGCGGCGGCAGAGAGGGGGATATCCCGCTCTGCGCAGTCGTGC
CCCGTCCCCGCCCGCCCGCTCGCCCGCTCACCCGCTCGCTCCGCCGTTCC
CATGGGAGATTCAGACGTTTTCGACTCGATGGCGCCGCCGCCGCCGCCGC
CACAACCGCCGCCGACGACGATGTTTTCGCACGAGAAATTGAGTCGTCCC
CTCCCGCCCGCTCGCCCCGCCTTTCCCATGGAAGATATATATTTTTTCGA
CTCGACGGCGCCGCCGCCGCCGCCGATGTTTTCACACGTGAATTTCAATC
GTCCCCTCCCACCCGCTCGCCCCGCCTTTCCCATGGAAGATTCATATTTT
CTCGACTCGACGGCGCCGCTGCCGCCGCTGCCACCGATGTTTTCGCACGT
GAAATTGAGTCGCCCCCTCCCGCCCACTCGCCCCGCCTTTCCCATGGAAG
ATTCGTATTTTTCCGACTCGACAGCACCACCGCCGCCGCCGCTGTTCTCG
ACACGTGAATTTAATTACTTACCTACGGTTTTACCCCCAGGAGTGCTTTC
CGGACGGGTGCACACCCGTGACGGCCAACACTGCGGTGGCCCTCGCGAAC
CTGTTGATAAAACGGGAAGTTGTTGGGGTGGGCGCGACGGCCTCGAAAGG
GCAACGGCCGACTCCGTACGAGAGTCAGGCAAGCGTTTATGTATGTATGT
AGTGTGGCTGATCCCCGGTTGGGGTCGTCTAGGTAACAAGTCGTATGTAG
TAGAGGAAGCGGGCCAGTGGGGCAGGCGACGAACAAGCCAATAATGGGAC
GTAATAAAAACAATAAAAAAAACTTTTGGAAGCGCTGTGAGGCGGGCAGC
CGGGGTGATATTATCTTGTGTAGAAGTATACGGTAGGTAAAGATACAGAT
GCAATACTAGGTGTGGTGGTCTGGGGCGTAACTTTCGCGTGACCAATCCC
TGCGGGCCACGAAGCGCTGTCGGTGGAAAAAAGAAAAAGGGGAGGTTTTT
GTAGAAAGCAGTACTACTCTATAGGAACGCCCTGCACCCGGAGGAAGAGA
AACCCTGGTTGTTGAGCGTAAGGGATAGAGATTAATAGTTTTAATGGGTA
GAGACACGGCGTGGGTGACTGGTGGAACGTGTCCTGCCAGACAGAGCGGT
TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
ACCTCTACCTCGGGATTTGAGCGAACAACAGTAAAGGCAATCCGAAAGCA
AGACAATCGATAAAACTCCCCCGCGAATCTGGTGACTTTCGCCGACCGCC
GCTCCGGCCGTGTCTGTTATTGTGCAGGGCCTGAGCGAGGCAACGGGGCT
GCTGGAAAGCGGGGCCAAGTTCTACTCCGCTCGAGTTGAGAAGGCGCTCG
ATTCCCAAGACAGAAATTCTGCCCTGAACCCCGACTTATCGGGTGCCGCG
GTGAGTGCTTTGGGGGAGCGCATATATATATGTATGTACGTATACGACAC
AAGATAACACACCCTCTGGACCGATTTTCAAAGCTCAAGTACTCCACAGC
GAGAAGAGTGTCGGTCCCGAAAAGGGCAGCGTTGGGATTATCTCATTCAA
AGCTGCCCGAAAACGTGTCGTTTGGTATTAGAAATCATAATCGTTGCGGA
GTAACCGAGCTTTGAAAATCGGCCCAAGAGGTGTGTTATCTTGTGTCAAC
TTCTATGTAGCTATACGGTATGTACACGCCCGAACGCACACGAATCCCCC
AAAGAACACCCGTTTTGCGTAAATTTCTGTAACCGAGCACATACGGCAGG
CTAAATAAATAGCGACGGAAGAAGAACAAGAACAAGAAACTTGGTATTTA
TGAGACTCATGCGCGTACCGAGATAAAGTCCGGCGTTCGCGTGCTTTTTT
GTTGACCAACACCTTCCTCCTTCTCCACCCAGGCAAAAAAATATAAAGCA
CATTAATCTGGCCGTGTGCGTGCGTACCAACTATTTACGCCGTACACCCA
CGTATTTCTTCAGCACTTTCATCTGGCTGCATATCTAGAGCACAGAGAAC
ATCTTCCTTGTTGTTTCGTTCCCTTCTGACGGCAGCTTTCGACGACGACA
TCTCAGCCCACCATCGACAGCACCTCCATCCGGTGAATAGATACACTATG
TATCTGTCTATTTCAGTAATAGACAACTGTAGATCTAGACACCATAATAT
ACCGCACGCTGACCATTGAATATCTGTCACATCGAATCGACGGTTTCATG
TATGTCACCATCTGTCTGTCGTGCCTCGCACCTCACCGCAACGTATGTAT
GCAGGAGGGAGGGTTTGCCTGGACCGATCCAGACCTCGCCGGATCGAGGC
TAGACCCGCAGACGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10427:989..6005-

>mRNA_L-elsbetiae_contig10427.427.1 ID=mRNA_L-elsbetiae_contig10427.427.1|Name=mRNA_L-elsbetiae_contig10427.427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig10427:989..6005- (Laminarionema elsbetiae ELsaHSoW15)
GCCAAAGCCAAGAAGTTAGCGGAAGCCTGGGTTCAAGGCAAGGAAGGACA
GGACCTATGGAAGCAGGCCAAAGCCAAGAAGTTAGCGGAAGCCTGGGTTC
AAGGCAAGGAAGGACAGGACCTATGGAAGCAGGAGTGCAAGCGGCTCCTG
CTGGAGTGCCGGCGCAGGCTAGAGGTCGTACCCCGCGCCGAGGAGTGCAA
GCGGCTCCTGCTGGAGTGCCGGCGCAGGCTAGAGGTCGTACCCCGCGCCG
AGGTTGAGTCACGCACATGGCAGGCGCTGGTGGCGTATCGATCAAAGACC
CTCGCGCGCGAGCTGGGCGGGCAGGGGACCGAGCTCAGCACGGCCGAAAA
CCACCTCGTGCGGTTGAGTCACGCACATGGCAGGCGCTGGTGGCGTATCG
ATCAAAGACCCTCGCGCGCGAGCTGGGCGGGCAGGGGACCGAGCTCAGCA
CGGCCGAAAACCACCTCGTGCGGGCCTGGGAAATTCTCGAAAGCCGGCAC
GGGAGAGTCCACCCCGACGTCGGCGCGGCCTGCATATCTCTGGGAAACCT
TGCCGTCATTCGTAGAAGGCAAGGCGAGGCGGCCTGGGAAATTCTCGAAA
GCCGGCACGGGAGAGTCCACCCCGACGTCGGCGCGGCCTGCATATCTCTG
GGAAACCTTGCCGTCATTCGTAGAAGGCAAGGCGAGGCCACCCGTGACGG
CCAACACTGCGGTGGCCCTCGCGAACCTGTTGATAAAACGGGAAGTTGTT
GGGGTGGGCGCGACGGCCTCGAAAGGGCAACGGCCGACTCCGTACGAGAG
TCAGCACCCGTGACGGCCAACACTGCGGTGGCCCTCGCGAACCTGTTGAT
AAAACGGGAAGTTGTTGGGGTGGGCGCGACGGCCTCGAAAGGGCAACGGC
CGACTCCGTACGAGAGTCAGGGCCTGAGCGAGGCAACGGGGCTGCTGGAA
AGCGGGGCCAAGTTCTACTCCGCTCGAGTTGAGGCCTGAGCGAGGCAACG
GGGCTGCTGGAAAGCGGGGCCAAGTTCTACTCCGCTCGAGTTGA
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