mRNA_L-elsbetiae_contig1624.4268.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1624.4268.1
Unique NamemRNA_L-elsbetiae_contig1624.4268.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Match: D7FL86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL86_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.220e-47
Identity = 93/134 (69.40%), Postives = 106/134 (79.10%), Query Frame = 1
Query:    1 DGLVYKRATIAKRYLSTWFVPDVLGTLPLASLLGLLFSTVGSNSLQGVKLLRLVRXXXXXXXXXXXXXXXXXANIDLARRFNPSVVRLIKLLGKIVFAGHLLGCMWFVVDECAVDGEDNTWQTCGGDSLSSKVR 402
            D LVYKRATIA++Y+STWF PDVLGT+P ASL+GL  +TV  +SLQ V  LR   XXXXXXXXXXXXX    A +D +RR NPS+VRLIKLLGKIVFAGHLLGC WF+VDEC VDG D+ W  CGG+SL SK R
Sbjct:   25 DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTV--DSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKAR 156          
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Match: A0A6H5KTC9_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC9_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 5.370e-45
Identity = 92/147 (62.59%), Postives = 104/147 (70.75%), Query Frame = 1
Query:    1 DGLVYKRATIAKRYLSTWFVPDVLGTLPLASLLGLLFSTVGSNSLQGVKLLR-------------LVRXXXXXXXXXXXXXXXXXANIDLARRFNPSVVRLIKLLGKIVFAGHLLGCMWFVVDECAVDGEDNTWQTCGGDSLSSKVR 402
            D LVYKRATIA++Y+STWF PDVLGT+P ASL+GL  +TV  +SLQ V  LR             LVR      XXXXXXX    A +D +RR NPS+VRLIKLLGKIVFAGHLLGC WFVVDEC VDG D+ W  CGG+SL SKVR
Sbjct:  132 DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTV--DSLQSVNFLRQDGFVFANYVVAALVRVFRLLKXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFVVDECDVDGGDDMWPKCGGESLGSKVR 276          
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Match: D8LJT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT9_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 3.960e-41
Identity = 92/132 (69.70%), Postives = 105/132 (79.55%), Query Frame = 1
Query:    1 DGLVYKRATIAKRYLSTWFVPDVLGTLPLASLLGLLFSTVGSNSLQGVKLLRLVRXXXXXXXXXXXXXXXXXANIDLARRFNPSVVRLIKLLGKIVFAGHLLGCMWFVVDECAVDGEDNTWQTCGGDSLSSK 396
            D LVYKRATIA++Y+STWF PDVLGT+P ASL+GL  +TV  +SLQ V  LR   XXXXXXXXXXXXX    A +D +RR NPS+VRLIKLLGKIVFAGHLLGC WF+VDEC VDG D+ W  CGG+SL SK
Sbjct:  177 DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTV--DSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK 306          
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Match: A0A6G0X2A4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2A4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.110e-8
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 DGLVYKRATIAKRYLSTWFVPDVLGTLPLASLLGLLFSTVGSNSLQGVKLLRLVRXXXXXXXXXXXXXXXXXANIDLARRFNPSVVRLIKLLGKIVFAGHLLGCMWFVVDE 333
            D LV     IAK+YL TWF+ D++ T+P+ S+     +   S+S   ++L R++ XXXXXXXXXXXX     A  + A  FN  +VRL++L+  ++F  HLL C + ++ +
Sbjct:  171 DELVVNHKEIAKKYLKTWFLLDIVSTIPIESITTYFGNQSASHSFSSIQLFRILXXXXXXXXXXXXXLQAFFAKAETAFGFNAGMVRLVRLVLYVLFISHLLACFFHLLGQ 281          
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Match: A0A024TQP4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQP4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.280e-8
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    4 GLVYKRAT-IAKRYLSTWFVPDVLGTLPLASLLGLLFSTVGSNSLQGVKLLRLVRXXXXXXXXXXXXXXXXXANIDLARRFNPSVVRLIKLLGKIVFAGHLLGCMWFVV 327
            GLVY   T IA+ YL  WF+ D   T+PL S++ L++    +N+LQ  K+ R ++  XXXXXXXX       +  +     N SV+ L+K+L  ++F  HL+ C+WF V
Sbjct:  161 GLVYYNKTQIAQSYLRGWFLVDFASTMPLESIVKLIYPDTPTNALQTAKIFRGLKLVXXXXXXXXRKIGNMISKFEEEVFANQSVLSLVKILLFLLFLAHLMACVWFYV 269          
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Match: W4GBE9_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBE9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.290e-8
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    4 GLVYKRAT-IAKRYLSTWFVPDVLGTLPLASLLGLLFSTVGSNSLQGVKLLRLVRXXXXXXXXXXXXXXXXXANIDLARRFNPSVVRLIKLLGKIVFAGHLLGCMWFVVDECA 339
            GLVY   T IA+ YL  WF+ D   T+PL S++ +++    +N+LQ  K+ R ++  XXXXXXXX       +  +     N SV+ L+K+L  ++F  HL+ C+WF V + +
Sbjct:  172 GLVYYNKTQIAQSYLRGWFLVDFASTMPLESIVKIMYPDTSTNTLQTAKIFRGLKLVXXXXXXXXRKIGNMISKFEEEVFANQSVLSLVKILLFLLFLAHLVACVWFYVAQAS 284          
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Match: A0A2D4BDQ3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDQ3_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 1.350e-7
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    1 DGLVYKRATIAKRYLSTWFVPDVLGTLPLASLLGLLFSTVGSNSLQGVKLLRLVRXXXXXXXXXXXXXXXXXANIDLARRFNPSVVRLIKLLGKIVFAGHLLGCMWFVVDECAVDGEDNTW 363
            D L+  R  IAKRY++TWF+PD++ +LP   + G +       S+  +KL R++RXXXXXXXXXXXX       I+     +    RL +++G+++   H+L C W +V   + D +  TW
Sbjct:  166 DMLITDRYLIAKRYVTTWFLPDLISSLPTEYIFGGVMDGSHDKSVVSLKLTRVIRXXXXXXXXXXXXLRQFARKIEDVLEIDAVGARLSQVIGQVLLVTHILACFWHLVGY-SDDDKTETW 285          
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Match: A0A225X3Q1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X3Q1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.360e-7
Identity = 51/139 (36.69%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    1 DGLVYKRATIAKRYLSTWFVPDVLGTLPLASLL--GLLFSTVGSNSLQG-----------VKLLRLVRXXXXXXXXXXXXXXXXXANIDLARRFNPSVVRLIKLLGKIVFAGHLLGCMWFVVDECAVDGEDNTWQTCGG 378
            + +V  R  IA+RYL++WF+PDV+  LPL   L    + ST  S+   G           ++L RL RXXXXXXXXXXXX     A ++ A   +  + RL +L+G+++   H+  C W ++     D E NTW    G
Sbjct:  222 ENMVRDRRVIARRYLASWFIPDVMAVLPLDYFLINNDVDSTSSSHGSGGNDTISNAQVLSLRLARLTRXXXXXXXXXXXXLRHFVAKVEDAFNLDAVLARLSRLIGQVLLVTHVFSCFWHLIGFTTED-EGNTWMLEAG 359          
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Match: A0A662X0G0_9STRA (Uncharacterized protein n=3 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0G0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.600e-6
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 DGLVYKRATIAKRYLSTWFVPDVLGTLPLASLL---GLLFSTVGSN--------SLQGVKLLRLVRXXXXXXXXXXXXXXXXXANIDLARRFNPSVVRLIKLLGKIVFAGHLLGCMWFVVDECAVDGEDNTW 363
            D +V  R  IAKRY+++WF+PD+L  LP+   L     +++T GS         S+  ++L RL  XXXXXXXXXXXX       ++ A   +  + RL +L+G+++   H+L C W ++     D E +TW
Sbjct:  125 DNMVRDRKHIAKRYVTSWFLPDILAVLPVDYFLVQESAVYNTSGSGGSVISSNASVLSLRLTRLTXXXXXXXXXXXXXLRHLAMKVEDALDLDAVLSRLTRLIGQVLLVTHVLSCFWHLIGVTTGD-EGSTW 255          
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Match: A0A5D6XHN9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHN9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.650e-6
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    1 DGLVYKRATIAKRYLSTWFVPDVLGTLPLASLLGLLFSTVGSNSLQGVKLLRLVRXXXXXXXXXXXXXXXXXANIDLARRFNPSVVRLIKLLGKIVFAGHLLGCMWFVV----DECAVDGEDNTWQTCGG 378
            + +   R  IA+RYLS+WF+PDVL  +P   ++  + +    NS+  +KL R++RXXXXXXXXXXX        ++ A   +    R+ +L+ +++   H+L C W  V    D  AV     TW T  G
Sbjct: 1050 EPMARDRRQIARRYLSSWFLPDVLAIIPADYVINGVSTASRDNSVLSLKLARMIRXXXXXXXXXXXKLRQFVMKLEDALELDAVFARMTRLISQVLLVTHILSCFWHYVGYTDDAMAV-----TWLTALG 1174          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1624.4268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FL86_ECTSI9.220e-4769.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTC9_9PHAE5.370e-4562.59Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LJT9_ECTSI3.960e-4169.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0X2A4_9STRA2.110e-839.64Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TQP4_9STRA7.280e-839.45Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4GBE9_9STRA7.290e-837.17Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A2D4BDQ3_PYTIN1.350e-737.19Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A225X3Q1_9STRA6.360e-736.69Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A662X0G0_9STRA1.600e-636.36Uncharacterized protein n=3 Tax=Nothophytophthora ... [more]
A0A5D6XHN9_9STRA1.650e-635.38Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1624contigL-elsbetiae_contig1624:3028..4294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.6e-35
Seed eggNOG ortholog2880.D8LJT9
KEGG koko:K21867
KEGG TC1.A.1.4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.7365682-CDS-L-elsbetiae_contig1624:3027..32741622815670.7365682-CDS-L-elsbetiae_contig1624:3027..3274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1624 3028..3274 -
1691683027.6978316-CDS-L-elsbetiae_contig1624:3027..32741691683027.6978316-CDS-L-elsbetiae_contig1624:3027..3274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1624 3028..3274 -
1622815670.7465873-CDS-L-elsbetiae_contig1624:4139..42941622815670.7465873-CDS-L-elsbetiae_contig1624:4139..4294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1624 4140..4294 -
1691683027.7192764-CDS-L-elsbetiae_contig1624:4139..42941691683027.7192764-CDS-L-elsbetiae_contig1624:4139..4294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1624 4140..4294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1624.4268.1prot_L-elsbetiae_contig1624.4268.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1624 3028..4294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1624.4268.1

>prot_L-elsbetiae_contig1624.4268.1 ID=prot_L-elsbetiae_contig1624.4268.1|Name=mRNA_L-elsbetiae_contig1624.4268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
DGLVYKRATIAKRYLSTWFVPDVLGTLPLASLLGLLFSTVGSNSLQGVKL
LRLVRGIRLLKLMRILRLSRKMANIDLARRFNPSVVRLIKLLGKIVFAGH
LLGCMWFVVDECAVDGEDNTWQTCGGDSLSSKVR
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mRNA from alignment at L-elsbetiae_contig1624:3028..4294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1624.4268.1 ID=mRNA_L-elsbetiae_contig1624.4268.1|Name=mRNA_L-elsbetiae_contig1624.4268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1267bp|location=Sequence derived from alignment at L-elsbetiae_contig1624:3028..4294- (Laminarionema elsbetiae ELsaHSoW15)
GACGGTCTGGTTTACAAGCGGGCTACGATCGCGAAGAGGTACCTGTCGAC GTGGTTCGTGCCAGACGTTTTGGGCACCCTGCCACTGGCATCGCTTCTGG GGCTTCTATTTTCCACAGTTGGCTCCAACAGCCTGCAAGGCGTTAAACTT CTCAGGTGCTGGGGTGCTGTCAGATACCTCGGGAGCAACACTGTTTGTTT CCCAGTCAACGTGGTTCGGGCAGTCATGCCTGGCAAAGAAAGTTATCGGA CCTACCGCATCATAGACAAGTGTTTCAGCACCAGCAACGTGCCCCCCCCT TCTCTCGTGACTTTGCTGAAGAAGAAAAACCAATTGCGCGGTTAGTTGGC TGAATCGTGAACGTTAAAGCCTGTTTTGGAAAAGCGGATCGTCCCCGCGT TACAGAACGGTTTATGAACCAAAAGTTGTGCAAAACAAGGGTCAGGATAG GGTAGCCTCATGTTCATTGCCATCGTCGTAAAGGCCTCTTGCCAATCGCC AACGTTCGGAAACCAGGGATGCGGGTGCGTCCGCCCGCCTCTCGGTGTTG CTCTCTAGATGCAATCTTCAGAGCAACGATCGAAATCGAAAAGTAGTACC TGATGTAGGTTAGCAACTAGTTTTTGATGCTGCCTACACAAGCCGCCTTC GTGTTATGTCGGCTGGTTTTCACGTAGTGTATACCACTGTTGACGACACG GTTTTGCACCTGGGTTTCATGGCGTATACGTTGCAGTATCAGAAATGCCC TCACCAGCACTGGCATGTTGCCCTATTTATCAATACAAAAACCACACAGA ACGTTTATTTCGCGACGAACAACGTCGGTTGCCGAACCTGGCAATCGTCA TGCGGCCCATTAGGCCAACGAAACATGCTCAGCTTGGAGTTTACCCCCTA TTGATCAACAAACATTCATGCCCCAGGGCAACACTGCACGGTCGAAAACA TGGAACCTACAACTCCGTGCCGTATTTGTAAATATACATGCATCGAAAAA TTAACCAACAAATCGTGCAGGCTCGTGCGCGGAATCCGGCTGCTAAAGCT GATGAGGATCCTGCGGCTCTCGAGGAAAATGGCCAACATCGACCTTGCTC GGCGCTTCAACCCTTCCGTCGTGCGGTTGATCAAGCTGCTTGGGAAGATC GTCTTCGCTGGCCACTTGCTGGGCTGCATGTGGTTCGTGGTGGACGAATG TGCCGTCGATGGGGAGGACAATACGTGGCAGACATGCGGGGGAGACAGCC TCAGCTCAAAGGTAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1624:3028..4294-

>mRNA_L-elsbetiae_contig1624.4268.1 ID=mRNA_L-elsbetiae_contig1624.4268.1|Name=mRNA_L-elsbetiae_contig1624.4268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig1624:3028..4294- (Laminarionema elsbetiae ELsaHSoW15)
GACGGTCTGGTTTACAAGCGGGCTACGATCGCGAAGAGGTACCTGTCGAC
GTGGTTCGTGCCAGACGTTTTGGGCACCCTGCCACTGGCATCGCTTCTGG
GGCTTCTATTTTCCACAGTTGGCTCCAACAGCCTGCAAGGCGTTAAACTT
CTCAGGACGGTCTGGTTTACAAGCGGGCTACGATCGCGAAGAGGTACCTG
TCGACGTGGTTCGTGCCAGACGTTTTGGGCACCCTGCCACTGGCATCGCT
TCTGGGGCTTCTATTTTCCACAGTTGGCTCCAACAGCCTGCAAGGCGTTA
AACTTCTCAGGCTCGTGCGCGGAATCCGGCTGCTAAAGCTGATGAGGATC
CTGCGGCTCTCGAGGAAAATGGCCAACATCGACCTTGCTCGGCGCTTCAA
CCCTTCCGTCGTGCGGTTGATCAAGCTGCTTGGGAAGATCGTCTTCGCTG
GCCACTTGCTGGGCTGCATGTGGTTCGTGGTGGACGAATGTGCCGTCGAT
GGGGAGGACAATACGTGGCAGACATGCGGGGGAGACAGCCTCAGCTCAAA
GGTAAGGGCTCGTGCGCGGAATCCGGCTGCTAAAGCTGATGAGGATCCTG
CGGCTCTCGAGGAAAATGGCCAACATCGACCTTGCTCGGCGCTTCAACCC
TTCCGTCGTGCGGTTGATCAAGCTGCTTGGGAAGATCGTCTTCGCTGGCC
ACTTGCTGGGCTGCATGTGGTTCGTGGTGGACGAATGTGCCGTCGATGGG
GAGGACAATACGTGGCAGACATGCGGGGGAGACAGCCTCAGCTCAAAGGT
AAGG
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