mRNA_L-elsbetiae_contig10423.426.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10423.426.1
Unique NamemRNA_L-elsbetiae_contig10423.426.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Match: D7FGX7_ECTSI (ASCH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX7_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.530e-47
Identity = 74/100 (74.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:   34 AKVRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVEVVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKLWKMDKHTREAA 333
            A+VRAVEDQYRS+Y+A+ I  +L LPTSYPTSCLLGCV++V CLP A+FQA E +PLG K+ESQSEFV LCQ PR+LVLPFSL G HKLWK+DK TREAA
Sbjct:   67 AEVRAVEDQYRSIYAADGISDKLCLPTSYPTSCLLGCVDIVGCLPPAEFQAAEDMPLGPKLESQSEFVFLCQDPRQLVLPFSLSGQHKLWKLDKPTREAA 166
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BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Match: A0A7S2XVX9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVX9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.300e-26
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:   37 KVRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVEVVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKLWKMDKHTREAA 333
            ++  VE QYR +Y A +   E+  P  YPTSCLLGCV++ DC+ Q + Q+ E++P  AKMES S +  L + P++L+LPF L G HK+W +D    +AA
Sbjct:   67 EIEQVEQQYRQIYEAMEGVEEVKFPPKYPTSCLLGCVDIADCISQERLQSHENLPESAKMESMSPYCFLAENPQRLMLPFQLSGQHKIWVLDGEATKAA 165
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BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Match: A0A0L0FAY4_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FAY4_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 3.160e-22
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   28 LAAKVRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVEVVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKLWKMDKHTREAA 333
            L +++ AVE QYRS+Y   D+P     P +YP SCLLGCV VVD L Q +++  E     A  ES SE+V +C+ P++L L +++ G HK+W +DK    AA
Sbjct:    4 LPSQIEAVESQYRSMYGERDLP----FPETYPQSCLLGCVSVVDVLTQDEYK--EKFSESATQESVSEYVFVCEEPQELALKYAVTGDHKIWNLDKTIATAA 99
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BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Match: A0A0K9QD77_SPIOL (ASCH domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QD77_SPIOL)

HSP 1 Score: 93.6 bits (231), Expect = 5.680e-21
Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:   40 VRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVEVVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKLWKMDKHTREAA 333
            ++A+ED YR +Y+   I  +L  P +YPTS LLGCVEVV C+   + Q+ E +P G ++E Q++F  LC+ P+KL++PF + G   ++ ++K   EAA
Sbjct:   58 IKAIEDFYREIYAVNGIE-DLKFPDNYPTSLLLGCVEVVGCISCEELQSWEELPEGVRLEGQTDFCWLCEQPQKLLIPFEMRGQQGVYNLEKKIYEAA 154
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BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Match: A0A0K9QDA3_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QDA3_SPIOL)

HSP 1 Score: 93.6 bits (231), Expect = 6.630e-21
Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:   40 VRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVEVVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKLWKMDKHTREAA 333
            ++A+ED YR +Y+   I  +L  P +YPTS LLGCVEVV C+   + Q+ E +P G ++E Q++F  LC+ P+KL++PF + G   ++ ++K   EAA
Sbjct:   67 IKAIEDFYREIYAVNGIE-DLKFPDNYPTSLLLGCVEVVGCISCEELQSWEELPEGVRLEGQTDFCWLCEQPQKLLIPFEMRGQQGVYNLEKKIYEAA 163
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BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Match: A0A803KSW3_CHEQI (ASCH domain-containing protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KSW3_CHEQI)

HSP 1 Score: 91.7 bits (226), Expect = 3.190e-20
Identity = 38/98 (38.78%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:   40 VRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVEVVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKLWKMDKHTREAA 333
            ++A+ED Y+ +Y+   I  +L  P +YPTS L+GCVEVV C+   + Q+ E +P G ++E Q+++  LC+ P+KL++PF + G H ++ +++   EAA
Sbjct:   58 IKAMEDFYKEIYAVNGIK-DLKFPDNYPTSRLIGCVEVVGCITCEELQSWEELPEGVRLEGQTDYCWLCEQPQKLIIPFEMRGQHGVYNLERKIYEAA 154
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BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Match: UPI000540025E (activating signal cointegrator 1 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000540025E)

HSP 1 Score: 90.9 bits (224), Expect = 6.490e-20
Identity = 40/101 (39.60%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:   31 AAKVRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVEVVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKLWKMDKHTREAA 333
            A  +RA+ED YR +Y+   I  +L  P +YPTS LLGCVEVV C+   + Q+ E +P G ++E Q+E+  LC+ P+KL++PF + G   ++ +++   + A
Sbjct:   55 AETIRAMEDFYREIYAVNGIK-DLKFPENYPTSRLLGCVEVVGCIKCEELQSWEELPEGVRLEGQTEYCWLCEQPQKLIIPFEMRGQQGVYNLERKIYDGA 154
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BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Match: A0A067JW31_JATCU (ASCH domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JW31_JATCU)

HSP 1 Score: 91.3 bits (225), Expect = 1.030e-19
Identity = 40/98 (40.82%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:   40 VRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVEVVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKLWKMDKHTREAA 333
            ++A+ED YR +Y+   I  ++  P  YP S LLGCVEVV C+   +  + E+IP+GA++E Q++F  LC+ P+KL++PF + G+ +++ ++K   EAA
Sbjct:   72 IKAMEDFYREIYALNGIT-DIKFPEHYPVSRLLGCVEVVGCVKCEELASWEAIPVGARLEGQTDFCWLCEHPQKLLVPFEMRGYQRVYNLEKKIYEAA 168
[Close]
BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Match: UPI0018D8D18D (activating signal cointegrator 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8D18D)

HSP 1 Score: 92.0 bits (227), Expect = 1.970e-19
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:   31 AAKVRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVEVVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKLWKMDKHTREAA 333
            A ++  VE+ + + + A+D   E+  P  YPTSCLLGCV++VDCL Q Q+Q  E  P G   +S S +V +C+ P++LV+ F + G HK+WKMD    +AA
Sbjct:  489 AEEIAQVENAHLATHQADDAEEEIFFPREYPTSCLLGCVDMVDCLSQDQYQ--EQYPRG---DSSSPYVFICENPQELVVRFPIKGKHKIWKMDGQILKAA 584
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BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Match: A0A2C9VAW2_MANES (ASCH domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VAW2_MANES)

HSP 1 Score: 89.4 bits (220), Expect = 4.490e-19
Identity = 39/100 (39.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:   34 AKVRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVEVVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKLWKMDKHTREAA 333
            A ++A+E+ YR +Y+   I  E+  P  YP S LLGCVEVV C+   +  + E++P+G ++E Q++F  LC+ P+KL++PF + G+  ++ ++K   EAA
Sbjct:   62 ATIKAMEEFYREIYAVNGIT-EIKFPEHYPVSRLLGCVEVVGCVRCEELASWEAVPVGVRLEGQTDFCWLCEQPKKLLVPFEMRGYQGVYNLEKKIYEAA 160
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10423.426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGX7_ECTSI1.530e-4774.00ASCH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2XVX9_9STRA2.300e-2645.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0L0FAY4_9EUKA3.160e-2244.12Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A0K9QD77_SPIOL5.680e-2141.84ASCH domain-containing protein n=2 Tax=Spinacia ol... [more]
A0A0K9QDA3_SPIOL6.630e-2141.84Uncharacterized protein n=1 Tax=Spinacia oleracea ... [more]
A0A803KSW3_CHEQI3.190e-2038.78ASCH domain-containing protein n=2 Tax=Chenopodium... [more]
UPI000540025E6.490e-2039.60activating signal cointegrator 1 n=1 Tax=Beta vulg... [more]
A0A067JW31_JATCU1.030e-1940.82ASCH domain-containing protein n=1 Tax=Jatropha cu... [more]
UPI0018D8D18D1.970e-1943.56activating signal cointegrator 1-like n=1 Tax=Pati... [more]
A0A2C9VAW2_MANES4.490e-1939.00ASCH domain-containing protein n=1 Tax=Manihot esc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10423contigL-elsbetiae_contig10423:616..1419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue9.3e-37
Seed eggNOG ortholog2880.D7FGX7
Preferred nameTRIP4
Hectar predicted targeting categorysignal peptide
GOsGO:0002020,GO:0002119,GO:0002164,GO:0003674,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006355,GO:0006810,GO:0007154,GO:0007165,GO:0007275,GO:0008134,GO:0008150,GO:0009719,GO:0009725,GO:0009755,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0014070,GO:0016604,GO:0016922,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030331,GO:0030518,GO:0030520,GO:0030522,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031594,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033993,GO:0035035,GO:0035257,GO:0035258,GO:0040024,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043401,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045202,GO:0045595,GO:0045661,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0048545,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051427,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0080090,GO:0099053,GO:0140110,GO:1901998,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.transcription coactivator activity
EggNOG OGsKOG2845@1,KOG2845@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size333
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10423.426.1prot_L-elsbetiae_contig10423.426.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10423 616..1419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.639221-CDS-L-elsbetiae_contig10423:615..7861622815267.639221-CDS-L-elsbetiae_contig10423:615..786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10423 616..786 +
1691682806.5721526-CDS-L-elsbetiae_contig10423:615..7861691682806.5721526-CDS-L-elsbetiae_contig10423:615..786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10423 616..786 +
1622815267.6522627-CDS-L-elsbetiae_contig10423:1007..10861622815267.6522627-CDS-L-elsbetiae_contig10423:1007..1086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10423 1008..1086 +
1691682806.582488-CDS-L-elsbetiae_contig10423:1007..10861691682806.582488-CDS-L-elsbetiae_contig10423:1007..1086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10423 1008..1086 +
1622815267.6636417-CDS-L-elsbetiae_contig10423:1336..14191622815267.6636417-CDS-L-elsbetiae_contig10423:1336..1419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10423 1337..1419 +
1691682806.5912907-CDS-L-elsbetiae_contig10423:1336..14191691682806.5912907-CDS-L-elsbetiae_contig10423:1336..1419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10423 1337..1419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10423.426.1

>prot_L-elsbetiae_contig10423.426.1 ID=prot_L-elsbetiae_contig10423.426.1|Name=mRNA_L-elsbetiae_contig10423.426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MPPTFLALVLAAKVRAVEDQYRSVYSAEDIPGELSLPTSYPTSCLLGCVE
VVDCLPQAQFQATESIPLGAKMESQSEFVLLCQAPRKLVLPFSLPGHHKL
WKMDKHTREAA
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mRNA from alignment at L-elsbetiae_contig10423:616..1419+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10423.426.1 ID=mRNA_L-elsbetiae_contig10423.426.1|Name=mRNA_L-elsbetiae_contig10423.426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig10423:616..1419+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCAACATTTCTTGCTCTTGTCTTGGCTGCGAAGGTTCGAGCGGT
GGAGGATCAATATCGCTCCGTTTACTCTGCTGAGGATATTCCAGGCGAAC
TGTCTCTACCGACATCGTATCCAACCTCTTGCCTCCTTGGATGCGTGGAA
GTCGTGGATTGTCTACCGCAAGTGAGTTTTATATTGTAAATGCAGTGTGG
GGTGGCGACATATTTAGTTTGTGTTTTAGATGGTGTTGAGACGACTTACG
ATTCACAGCTAGTCAACCAGCATCGCGACGGGGCAATGTAAGCACCCGCG
GCACATATGTCATCGCGTCTATTCGCCAAAGTAAATCAAGCAGTCAAACG
TCAAACGTCAAAACTGTGGCCTGCCATCCATCATGCTCGCAGGCACAATT
TCAAGCAACAGAGTCGATTCCTTTGGGGGCCAAGATGGAGAGTCAATCAG
AATTTGTTCTTCTGTGCCAAGGTACGACGCAACGCACGTGAACGAGCTAT
CCTTAACCTTTCTCGAAAACAGGTTTCCCTGTTCTAGGGTGGTAGTGCTG
GACATTCAAACTTGAGAGGTGTGCGTCTTGACGAAGAAGCAAATAAGTTC
TTCAACAATCTGTTACGGAACTTCAGCAAAGGGTGTCGCCTGCCTGTCTT
GTTCGACCCGTTGCTGGAGAATGTGAATTAACCCTATGTATCGCCCCATT
GTTTGTCCTCTACCGCTTCAGCTCCAAGGAAGCTTGTCCTGCCCTTCAGC
TTGCCCGGGCACCACAAGTTGTGGAAGATGGACAAGCACACCCGAGAGGC
CGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10423:616..1419+

>mRNA_L-elsbetiae_contig10423.426.1 ID=mRNA_L-elsbetiae_contig10423.426.1|Name=mRNA_L-elsbetiae_contig10423.426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig10423:616..1419+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCAACATTTCTTGCTCTTGTCTTGGCTGCGAAGGTTCGAGCGGT
GGAGGATCAATATCGCTCCGTTTACTCTGCTGAGGATATTCCAGGCGAAC
TGTCTCTACCGACATCGTATCCAACCTCTTGCCTCCTTGGATGCGTGGAA
GTCGTGGATTGTCTACCGCAAATGCCGCCAACATTTCTTGCTCTTGTCTT
GGCTGCGAAGGTTCGAGCGGTGGAGGATCAATATCGCTCCGTTTACTCTG
CTGAGGATATTCCAGGCGAACTGTCTCTACCGACATCGTATCCAACCTCT
TGCCTCCTTGGATGCGTGGAAGTCGTGGATTGTCTACCGCAAGCACAATT
TCAAGCAACAGAGTCGATTCCTTTGGGGGCCAAGATGGAGAGTCAATCAG
AATTTGTTCTTCTGTGCCAAGGCACAATTTCAAGCAACAGAGTCGATTCC
TTTGGGGGCCAAGATGGAGAGTCAATCAGAATTTGTTCTTCTGTGCCAAG
CTCCAAGGAAGCTTGTCCTGCCCTTCAGCTTGCCCGGGCACCACAAGTTG
TGGAAGATGGACAAGCACACCCGAGAGGCCGCCCTCCAAGGAAGCTTGTC
CTGCCCTTCAGCTTGCCCGGGCACCACAAGTTGTGGAAGATGGACAAGCA
CACCCGAGAGGCCGCC
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