mRNA_L-elsbetiae_contig16229.4260.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16229.4260.1
Unique NamemRNA_L-elsbetiae_contig16229.4260.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16229.4260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16229contigL-elsbetiae_contig16229:2458..2947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.0567937-CDS-L-elsbetiae_contig16229:2457..29161622815670.0567937-CDS-L-elsbetiae_contig16229:2457..2916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16229 2458..2916 +
1691683027.314094-CDS-L-elsbetiae_contig16229:2457..29161691683027.314094-CDS-L-elsbetiae_contig16229:2457..2916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16229 2458..2916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.0690887-UTR-L-elsbetiae_contig16229:2916..29471622815670.0690887-UTR-L-elsbetiae_contig16229:2916..2947Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16229 2917..2947 +
1691683027.3248591-UTR-L-elsbetiae_contig16229:2916..29471691683027.3248591-UTR-L-elsbetiae_contig16229:2916..2947Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16229 2917..2947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16229.4260.1prot_L-elsbetiae_contig16229.4260.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16229 2458..2916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16229.4260.1

>prot_L-elsbetiae_contig16229.4260.1 ID=prot_L-elsbetiae_contig16229.4260.1|Name=mRNA_L-elsbetiae_contig16229.4260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
VTTFFGLLKEPNKSKPSALHDPTRPHTHPTSGVHPPTVVPSIQVSCICWF
RQIHIWCNTVPINPFSSLNVFGGSINPFCASSFGSIVGTPIGRITKNVVT
VALRNSTTRDNTAPCNARYFNIIMTSNWCRVRKERGPWHLVQDAREVEDS
ST*
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mRNA from alignment at L-elsbetiae_contig16229:2458..2947+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16229.4260.1 ID=mRNA_L-elsbetiae_contig16229.4260.1|Name=mRNA_L-elsbetiae_contig16229.4260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=490bp|location=Sequence derived from alignment at L-elsbetiae_contig16229:2458..2947+ (Laminarionema elsbetiae ELsaHSoW15)
GTCACCACGTTTTTCGGTCTTCTGAAGGAACCCAATAAATCGAAACCATC
AGCCCTCCATGATCCAACTCGTCCGCACACCCATCCGACGTCGGGGGTTC
ACCCACCCACAGTAGTTCCGTCAATCCAGGTTTCGTGTATATGCTGGTTC
CGTCAAATCCATATTTGGTGCAATACTGTTCCCATCAATCCATTCAGCTC
CTTAAATGTTTTTGGAGGTTCCATCAACCCATTTTGCGCCTCCAGTTTTG
GTTCGATTGTTGGGACTCCAATCGGAAGAATAACAAAAAATGTGGTGACA
GTCGCCCTCCGCAACTCGACAACTAGGGACAACACGGCTCCCTGCAACGC
ACGATATTTCAACATCATCATGACCAGCAACTGGTGCAGAGTGCGAAAGG
AGAGAGGACCCTGGCACCTCGTACAGGATGCAAGAGAGGTTGAAGACTCC
AGCACATAAAAGACACCTCCTCCGAGCTACCCTGAACACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16229:2458..2947+

>mRNA_L-elsbetiae_contig16229.4260.1 ID=mRNA_L-elsbetiae_contig16229.4260.1|Name=mRNA_L-elsbetiae_contig16229.4260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig16229:2458..2947+ (Laminarionema elsbetiae ELsaHSoW15)
GTCACCACGTTTTTCGGTCTTCTGAAGGAACCCAATAAATCGAAACCATC
AGCCCTCCATGATCCAACTCGTCCGCACACCCATCCGACGTCGGGGGTTC
ACCCACCCACAGTAGTTCCGTCAATCCAGGTTTCGTGTATATGCTGGTTC
CGTCAAATCCATATTTGGTGCAATACTGTTCCCATCAATCCATTCAGCTC
CTTAAATGTTTTTGGAGGTTCCATCAACCCATTTTGCGCCTCCAGTTTTG
GTTCGATTGTTGGGACTCCAATCGGAAGAATAACAAAAAATGTGGTGACA
GTCGCCCTCCGCAACTCGACAACTAGGGACAACACGGCTCCCTGCAACGC
ACGATATTTCAACATCATCATGACCAGCAACTGGTGCAGAGTGCGAAAGG
AGAGAGGACCCTGGCACCTCGTACAGGATGCAAGAGAGGTTGAAGACTCC
AGCACATAAGTCACCACGTTTTTCGGTCTTCTGAAGGAACCCAATAAATC
GAAACCATCAGCCCTCCATGATCCAACTCGTCCGCACACCCATCCGACGT
CGGGGGTTCACCCACCCACAGTAGTTCCGTCAATCCAGGTTTCGTGTATA
TGCTGGTTCCGTCAAATCCATATTTGGTGCAATACTGTTCCCATCAATCC
ATTCAGCTCCTTAAATGTTTTTGGAGGTTCCATCAACCCATTTTGCGCCT
CCAGTTTTGGTTCGATTGTTGGGACTCCAATCGGAAGAATAACAAAAAAT
GTGGTGACAGTCGCCCTCCGCAACTCGACAACTAGGGACAACACGGCTCC
CTGCAACGCACGATATTTCAACATCATCATGACCAGCAACTGGTGCAGAG
TGCGAAAGGAGAGAGGACCCTGGCACCTCGTACAGGATGCAAGAGAGGTT
GAAGACTCCAGCACATAA
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