mRNA_L-elsbetiae_contig16192.4251.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16192.4251.1
Unique NamemRNA_L-elsbetiae_contig16192.4251.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16192.4251.1 vs. uniprot
Match: A0A6H5L2I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.760e-33
Identity = 86/162 (53.09%), Postives = 98/162 (60.49%), Query Frame = 1 
Query:    1 GIVRLWRVAAATCPGRRRQGYXXXXXXXXXXXXXTEVHVELVKDMLVGGLQVSCLAASLWPQLPLVLAGTKEGTVFAFHLQEQQEPLSRQRHRGGDGDGGVEDGLAGAVASAVGNAGADGGSVLLPRS--DGTVGKTKLGAVLMKFEHTREPIEGVCSSREQ 480
            G+VRLW+ A   C  R R+                EV VEL+KDMLVGG QVSCLAASL P +P+VLAGT EGTVFAFHL + QEP  R+       DG  ED      A   G+ G  GGS    R   D  VG+T+LGAVLMKFEHT EPIEGVC S+EQ
Sbjct:   99 GVVRLWKAA---CLERSRE-----TAAAGGSGGDLEVQVELLKDMLVGGFQVSCLAASLSPTVPIVLAGTAEGTVFAFHLLQAQEPSDRR-------DGEAEDDR---PAVGYGDRGGRGGSAASGREPPDDAVGRTELGAVLMKFEHTSEPIEGVCCSQEQ 242
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BLAST of mRNA_L-elsbetiae_contig16192.4251.1 vs. uniprot
Match: D8LJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE2_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 2.530e-33
Identity = 84/162 (51.85%), Postives = 98/162 (60.49%), Query Frame = 1 
Query:    1 GIVRLWRVAAATCPGRRRQGYXXXXXXXXXXXXXTEVHVELVKDMLVGGLQVSCLAASLWPQLPLVLAGTKEGTVFAFHLQEQQEPLSRQRHRGGDGDGGVEDGLAGAVASAVGNAGADGGSVLLPRS--DGTVGKTKLGAVLMKFEHTREPIEGVCSSREQ 480
            G+VRLW+ A   C  R R+                EVHVEL+KDMLVGG QVSCLAASL P +P+VLAGT EGTVFAFHL + QEP  R+     D    V     G      G+ G+ GGSV   R   D  VG+T+LGAVLMKFEHT EP+E VC S+EQ
Sbjct:  112 GVVRLWKAA---CLERSRE-----TVAAGGGGGDLEVHVELLKDMLVGGFQVSCLAASLSPTVPIVLAGTAEGTVFAFHLLQAQEPSDRRDREAEDDRPTV-----GRPTVGYGDRGSRGGSVASGRERPDNAVGRTELGAVLMKFEHTSEPVERVCCSQEQ 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16192.4251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2I0_9PHAE1.760e-3353.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJE2_ECTSI2.530e-3351.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16192contigL-elsbetiae_contig16192:947..3456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size488
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.1873722-CDS-L-elsbetiae_contig16192:946..12791622815669.1873722-CDS-L-elsbetiae_contig16192:946..1279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16192 947..1279 -
1691683026.7300396-CDS-L-elsbetiae_contig16192:946..12791691683026.7300396-CDS-L-elsbetiae_contig16192:946..1279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16192 947..1279 -
1622815669.1980777-CDS-L-elsbetiae_contig16192:3303..34561622815669.1980777-CDS-L-elsbetiae_contig16192:3303..3456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16192 3304..3456 -
1691683026.7396307-CDS-L-elsbetiae_contig16192:3303..34561691683026.7396307-CDS-L-elsbetiae_contig16192:3303..3456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16192 3304..3456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16192.4251.1prot_L-elsbetiae_contig16192.4251.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16192 947..3456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16192.4251.1

>prot_L-elsbetiae_contig16192.4251.1 ID=prot_L-elsbetiae_contig16192.4251.1|Name=mRNA_L-elsbetiae_contig16192.4251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
GIVRLWRVAAATCPGRRRQGYGYAAGTGPSPDPNTEVHVELVKDMLVGGL
QVSCLAASLWPQLPLVLAGTKEGTVFAFHLQEQQEPLSRQRHRGGDGDGG
VEDGLAGAVASAVGNAGADGGSVLLPRSDGTVGKTKLGAVLMKFEHTREP
IEGVCSSREQV*
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mRNA from alignment at L-elsbetiae_contig16192:947..3456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16192.4251.1 ID=mRNA_L-elsbetiae_contig16192.4251.1|Name=mRNA_L-elsbetiae_contig16192.4251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2510bp|location=Sequence derived from alignment at L-elsbetiae_contig16192:947..3456- (Laminarionema elsbetiae ELsaHSoW15)
GGTATCGTGCGGCTGTGGAGAGTAGCAGCAGCCACGTGTCCGGGGCGGAG
GCGACAGGGCTATGGGTATGCTGCTGGCACCGGCCCCAGCCCCGACCCGA
ACACAGAAGTGCACGTCGAGCTCGTCAAAGATATGCTCGTCGGAGGCCTC
CAGGTACTGTACGTGCTGTAATCTGATGCAATACTTCGTTTCTGCGCTTT
GTTGACCCTTCGGGCCCACTTTTATTTTTCAGCATTGTACACTCTTTTTT
AGGGTAAGTGAGCCTGCGACCATGGGAATCGACCGCGTTGAGTGTTTTCG
ATTAGTACGGACAGGTGGAGGTGCCGTAGGGTTAGGGTTAGGGTTAACCC
TAACCCTAAGGATTAGTACGGACGGGTGGAGGTGCCGTATAGAGAGATCG
GGATGGTTTTTTAATGTGAAGACAACAGCGGCAACAACAGTGCCTACCTA
CGTATGTAAGTCGGCGTATGCTGTCTGTATTCTGTAGATTCTGGTGCATG
CGTGTGTTGTTTTTGGCAGCCCTCGGTCCCCTCTCGCCTCTCGCGGTATC
GGCATAGGAAGGCAGCGACGGCCTACGAGAGAGAGATAAAGAGAGGGAGA
GAGAGAGAGAGAGAGAGGGAGAGAGAGAGGGCCGCACATAACACTGTAGC
GATGATATCTTAGGGTTAGGTTAGGGTTAGGGATAGGGTTAGCCTAAACC
CTAACCCTAACCCTAACCCTAACCCTAACCCGATGATATCACAGCACGTT
TGGCAGGAGGGCAGGTGCAGCGATGTAACGACCAGATGGGTGACAATAGA
AACCGAACCGAACAGCTCGGCGCGTTTCTTTACCAAGTTGCTGCTTATAG
TGCATCATATTACTATCGCAATCGCCTCTAAGCCCCCCCCCCCCCCCCCC
CCCCCCCTTTTTTCCCCGGCGGAAACGGGGTTTTTTTGGGTTCCCCCCGG
GGGGGGTTTTTTTTTTTGGGGGAAAAAAAAAAACCCCCCCCGGGGNNNNN
NNNNNGGCTCTGGTTCCCACAATGTCTCTGCTCCCCCGCCTCGAGGCCCC
CCCCCCCCCCCCCATCACCTTTTCTGCCCGGACGGAAGCGTGATTTCTAT
GAGTTCCCTCCGGAGGGGATTTTTTTGTTCGCGGAAAACAAAGATACCCC
CGCCGGGGGGGGGGGACTTAGAGACGATTACGGTGTATTAAGGCCGCCTA
CGATCAGTGGCCCGGTGGCTGGCTTCCCCTGGTTTTCTGTCAGGTACCAT
CCGGAACAATTTTTTAATCTTGATTTTAGGGACACCAAGCTCTCGGTTTT
GGCGGAGTTGTCCGACAATTTTCAAAAAATGCTGCACCGTCTCCTTGGCC
TCTAGCTTATGCATTCATATCGAAGGACGTCTCTCAAAATAATAACATAG
CCGGGGGGCGGACTTCAAATGGGTCCTTGTGCCTCGGGTGGCGATGGGCC
AAAATAGCCGTTTCGGCTCGTTTGGGACTTTTGTAAAAAAATGGGGCTCA
ACTCCGACCTCAGCCTATGGCGGCGCACACCACGACTCTCACGCCCAACC
AGAGGCTACAAGCAGACACAGGTGTACTTGAATAATATGGTATCTCAGAG
CAACCTTCTGGCGTCCTCAGCAGATGCGGCAGCCCCGTTTTGAAATGGCA
GTGACGTTTGCCGTGTCAAGAACTCTACAACGGTAGCTTACGACTTCGTA
CGAAGAGCGGAGGACAGCAAAGGCCCTACAGCACTGCTAGATAAACGAAG
ACTACGCGAACGTAGCTGTTGTCCTTAGCTTTCAAAATTCATATCAAGCT
AGAGGCCAAGGAGATGGTGCACCATTTTAAATTGCGATGGCGCTTAGCGA
AAAAGTGAAAAGATACCAAAAACACGATTTGTATTGCACCGCTTTTCAAC
GACAAATCGTTTGTTTTTTGCCGACCAGCATTTCGTTTGCCCGAACAAAA
AAAGGGCCATAAAACACAGCATGCCTCTTCGTATTTTCTGGGGGCGGCAT
TATCCCCTTAGCCACGTGATCCTGGCCCGTTTTGGAAAGCATGGAGAACA
TGCGTACCGTCTCTCTATCTCTCTCTCTATCTATCCATACCGACGTCGCC
ATAGCGTCGTTGGCACTAGCATGGAACGCATTTGCCCAAATGCACCTACA
ATGCCTCGGAATTCCCTCCCCCTCCAGGTGTCCTGCCTTGCCGCATCCCT
GTGGCCGCAGCTGCCGCTCGTCCTGGCCGGCACGAAAGAGGGCACGGTCT
TCGCGTTCCATCTCCAAGAACAGCAAGAACCCCTCAGCCGTCAGCGTCAC
CGTGGTGGTGATGGCGATGGTGGCGTAGAGGACGGGCTCGCTGGTGCTGT
TGCGTCTGCTGTTGGTAACGCTGGTGCTGATGGGGGCAGTGTTCTATTGC
CCCGCTCGGATGGGACCGTCGGCAAGACGAAGCTCGGTGCAGTGCTGATG
AAGTTCGAGCACACTAGGGAGCCCATCGAGGGCGTTTGCAGCAGCCGAGA
GCAGGTATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16192:947..3456-

>mRNA_L-elsbetiae_contig16192.4251.1 ID=mRNA_L-elsbetiae_contig16192.4251.1|Name=mRNA_L-elsbetiae_contig16192.4251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig16192:947..3456- (Laminarionema elsbetiae ELsaHSoW15)
GGTATCGTGCGGCTGTGGAGAGTAGCAGCAGCCACGTGTCCGGGGCGGAG
GCGACAGGGCTATGGGTATGCTGCTGGCACCGGCCCCAGCCCCGACCCGA
ACACAGAAGTGCACGTCGAGCTCGTCAAAGATATGCTCGTCGGAGGCCTC
CAGGGTATCGTGCGGCTGTGGAGAGTAGCAGCAGCCACGTGTCCGGGGCG
GAGGCGACAGGGCTATGGGTATGCTGCTGGCACCGGCCCCAGCCCCGACC
CGAACACAGAAGTGCACGTCGAGCTCGTCAAAGATATGCTCGTCGGAGGC
CTCCAGGTGTCCTGCCTTGCCGCATCCCTGTGGCCGCAGCTGCCGCTCGT
CCTGGCCGGCACGAAAGAGGGCACGGTCTTCGCGTTCCATCTCCAAGAAC
AGCAAGAACCCCTCAGCCGTCAGCGTCACCGTGGTGGTGATGGCGATGGT
GGCGTAGAGGACGGGCTCGCTGGTGCTGTTGCGTCTGCTGTTGGTAACGC
TGGTGCTGATGGGGGCAGTGTTCTATTGCCCCGCTCGGATGGGACCGTCG
GCAAGACGAAGCTCGGTGCAGTGCTGATGAAGTTCGAGCACACTAGGGAG
CCCATCGAGGGCGTTTGCAGCAGCCGAGAGCAGGTATGAGTGTCCTGCCT
TGCCGCATCCCTGTGGCCGCAGCTGCCGCTCGTCCTGGCCGGCACGAAAG
AGGGCACGGTCTTCGCGTTCCATCTCCAAGAACAGCAAGAACCCCTCAGC
CGTCAGCGTCACCGTGGTGGTGATGGCGATGGTGGCGTAGAGGACGGGCT
CGCTGGTGCTGTTGCGTCTGCTGTTGGTAACGCTGGTGCTGATGGGGGCA
GTGTTCTATTGCCCCGCTCGGATGGGACCGTCGGCAAGACGAAGCTCGGT
GCAGTGCTGATGAAGTTCGAGCACACTAGGGAGCCCATCGAGGGCGTTTG
CAGCAGCCGAGAGCAGGTATGA
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