mRNA_L-elsbetiae_contig16189.4246.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16189.4246.1
Unique NamemRNA_L-elsbetiae_contig16189.4246.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16189.4246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16189contigL-elsbetiae_contig16189:860..1253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFYVE, RhoGEF and PH domain-containing protein
Ec32 orthologEc-28_001300.2
Exons1
Model size395
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.696512-CDS-L-elsbetiae_contig16189:859..12521622815668.696512-CDS-L-elsbetiae_contig16189:859..1252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16189 860..1252 +
1691683026.3772402-CDS-L-elsbetiae_contig16189:859..12521691683026.3772402-CDS-L-elsbetiae_contig16189:859..1252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16189 860..1252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16189.4246.1prot_L-elsbetiae_contig16189.4246.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16189 860..1252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16189.4246.1

>prot_L-elsbetiae_contig16189.4246.1 ID=prot_L-elsbetiae_contig16189.4246.1|Name=mRNA_L-elsbetiae_contig16189.4246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
DYDYDSDGSSVVSTGSSVTSTSSRLSIVSTPEVSWRQRQMKQQQRVKSSE
RAASVSGSGSGSSARRNTLSSSSLPPPSSLSSLQAFVAAGGGGGGGLESR
SRVSSSASVSESVLSSSLLRWCNVCEGEFTR
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mRNA from alignment at L-elsbetiae_contig16189:860..1253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16189.4246.1 ID=mRNA_L-elsbetiae_contig16189.4246.1|Name=mRNA_L-elsbetiae_contig16189.4246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=394bp|location=Sequence derived from alignment at L-elsbetiae_contig16189:860..1253+ (Laminarionema elsbetiae ELsaHSoW15)
GACTACGACTACGACTCGGACGGGTCTTCCGTCGTATCCACCGGCTCCTC
CGTCACCTCCACTAGCTCGAGGCTCTCGATCGTCTCCACGCCCGAGGTCT
CCTGGCGGCAGAGGCAGATGAAGCAGCAGCAGAGGGTCAAATCGTCCGAG
CGCGCCGCCTCGGTGTCCGGCTCCGGCTCTGGCTCCTCCGCGAGGCGAAA
CACGTTGTCGTCGTCGTCGTTGCCGCCGCCGTCGTCCTTGTCGAGTCTTC
AGGCCTTCGTCGCCGCCGGCGGTGGCGGCGGCGGCGGGCTGGAGTCCCGC
AGCCGGGTCTCGTCGTCTGCCTCGGTCTCGGAATCGGTGCTGTCGTCCTC
TCTGCTGCGGTGGTGCAACGTCTGCGAGGGCGAGTTCACGAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16189:860..1253+

>mRNA_L-elsbetiae_contig16189.4246.1 ID=mRNA_L-elsbetiae_contig16189.4246.1|Name=mRNA_L-elsbetiae_contig16189.4246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig16189:860..1253+ (Laminarionema elsbetiae ELsaHSoW15)
GACTACGACTACGACTCGGACGGGTCTTCCGTCGTATCCACCGGCTCCTC
CGTCACCTCCACTAGCTCGAGGCTCTCGATCGTCTCCACGCCCGAGGTCT
CCTGGCGGCAGAGGCAGATGAAGCAGCAGCAGAGGGTCAAATCGTCCGAG
CGCGCCGCCTCGGTGTCCGGCTCCGGCTCTGGCTCCTCCGCGAGGCGAAA
CACGTTGTCGTCGTCGTCGTTGCCGCCGCCGTCGTCCTTGTCGAGTCTTC
AGGCCTTCGTCGCCGCCGGCGGTGGCGGCGGCGGCGGGCTGGAGTCCCGC
AGCCGGGTCTCGTCGTCTGCCTCGGTCTCGGAATCGGTGCTGTCGTCCTC
TCTGCTGCGGTGGTGCAACGTCTGCGAGGGCGAGTTCACGAGGGACTACG
ACTACGACTCGGACGGGTCTTCCGTCGTATCCACCGGCTCCTCCGTCACC
TCCACTAGCTCGAGGCTCTCGATCGTCTCCACGCCCGAGGTCTCCTGGCG
GCAGAGGCAGATGAAGCAGCAGCAGAGGGTCAAATCGTCCGAGCGCGCCG
CCTCGGTGTCCGGCTCCGGCTCTGGCTCCTCCGCGAGGCGAAACACGTTG
TCGTCGTCGTCGTTGCCGCCGCCGTCGTCCTTGTCGAGTCTTCAGGCCTT
CGTCGCCGCCGGCGGTGGCGGCGGCGGCGGGCTGGAGTCCCGCAGCCGGG
TCTCGTCGTCTGCCTCGGTCTCGGAATCGGTGCTGTCGTCCTCTCTGCTG
CGGTGGTGCAACGTCTGCGAGGGCGAGTTCACGAGG
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